Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000680

Physical Location & Seq

Genomic Coordinates Reverse (-)

34247515 .. 34261029

Gene Structure 13515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGACTGCATGATGGGAATTCTCAAAGAGAAGACCACACTTTATGTCACCCACCAAGTTGAGTTTCTCCCAGCAGCCGACTTAATTCTGGTGATGCAAGATGGAAAAATTGCACAAGCTGGAAGCTTTGAAGAGCTTCTAAAACAAAATATAGGCTTTGAAGTTTTGATTCCACATCAAATGCTAAACTTCCACAGACACGACAGAAATCAGAGCATAATCTCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

76

Amino Acids

8.71

Weight (kDa)

5.68

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71330 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13080 AT3G13090 AT3G13100 AT3G13100
fragaria_vesca	FvH4_3g25430 FvH4_3g25430 FvH4_4g10780
malus_domestica	MD03G1188200.v1.1 MD11G1203300.v1.1 MD11G1203400.v1.1 MD11G1203500.v1.1 MD11G1203600.v1.1
prunus_persica	Prupe.4G235100_v2.0.a1 Prupe.4G235200_v2.0.a1 Prupe.4G235300_v2.0.a1 Prupe.I000500_v2.0.a1 Prupe.I000600_v2.0.a1 Prupe.I000700_v2.0.a1
pyrus_communis	pycom03g14070 pycom03g14080 pycom11g17640 pycom11g17650
rosa_chinensis	RchiOBHm_Chr4g0406401 RchiOBHm_Chr4g0406811 RchiOBHm_Chr5g0037441 RchiOBHm_Chr5g0037451 RchiOBHm_Chr5g0037461 RchiOBHm_Chr5g0046661 RchiOBHm_Chr5g0046671 RchiOBHm_Chr5g0046681
rosa_laevigata	RLG00000008754 RLG00000008756 RLG00000033782 RLG00000034430 RLG00000034431
rosa_multiflora	Rmu_co8175670.1_g000001 Rmu_sc0000292.1_g000013 Rmu_sc0000292.1_g000018 Rmu_sc0002271.1_g000015 Rmu_sc0002521.1_g000018 Rmu_sc0006408.1_g000011 Rmu_sc0008087.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023630 Rroxscaffold_1G00034680 Rroxscaffold_1G00034700 Rroxscaffold_5G00351590 Rroxscaffold_6G00394770
rosa_rugosa	Rorug04G0074200 Rorug04G0074200 Rorug04G0084900 Rorug04G0084900 Rorug05G0230800 Rorug05G0230800
rosa_samantha	Rh1AG181100 Rh4AG141000 Rh4BG137500 Rh4BG146500 Rh5CG289500 Rh5CG289600 Rh5CG344900 Rh5CG345000 Rh7AG392100
rosa_wichuraiana	Rw0G000830 Rw1G003740 Rw4G011460 Rw4G011480 Rw5G023560 Rw5G023570 Rw5G028980 Rw5G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	131, 161
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	3 cut(s)	119, 126, 136
AluI	AGCT	3 cut(s)	119, 126, 136
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	40, 103
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	7, 95
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	38
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	77, 119, 126, 136, 156
CviKI_1	RGCY	5 cut(s)	77, 119, 126, 136, 156
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	18
FaeI	CATG	1 cut(s)	13
FaiI	YATR	5 cut(s)	11, 45, 152, 218, 229
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	1 cut(s)	169
HphI	GGTGA	2 cut(s)	40, 103
Hpy188I	TCNGA	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	9, 97, 113
Hsp92II	CATG	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	126
LpnPI	CCDG	3 cut(s)	74, 84, 105
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	43, 143
MluCI	AATT	3 cut(s)	18, 84, 108
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	83
NlaIII	CATG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	75
SetI	ASST	3 cut(s)	121, 128, 138
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	227
SgeI	CNNG	8 cut(s)	22, 68, 83, 101, 110, 128, 132, 212
Sse9I	AATT	3 cut(s)	18, 84, 108
TasI	AATT	3 cut(s)	18, 84, 108
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.