Rh5AG310800

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008003
Physical Location & Seq
Reverse (-)
44799017 .. 44801902
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG310800.1

Sequence Viewer

Length: 1053 bp
ATGAACAAGAAGATGCAGTCGCCACCAACAACACCATCGAAACGCAATACCAGTCCTTCCCTTTTCTTCCGGTGCTTAGACCTCGTCCTTCCATGGCTAACCCCACAAGAGCTGGCCATGGCATCTCTGACCTGCACCACCCTCCGCAACCTCTCCAAGTCCATCACTCTCCGCCGCGCCTCCGACGCTTCCAGATCCCTCGAGCCCCATCCCATCCCATTCCATAACTCACTCGATCAACACCCTTATGCCTACTTCATCTACGCCCCTTCCTCTCTAACCCAATCATCTTCTTCTTCTTCTTCTTCACTGCTTCGCCAACCGTGGGGTTCCGGTCACCACGAGTCAGACTCGGACACCAGAACTGAAACGTCGTCGTTGCGTTTTGTTGACGAATCGGGAAACTGTGCGTCGTCTGGGTGTGAATGTGAAGAGACATGTGAGGATGGGAAAGAGGGGTGTCCGTGTGTTGTCGGCTTTGCTGGCTTCGACGGCGTCGTTTTCGAGTGTGGACCCAGTTGTGGATGCCGGTTAAGTTGTGGGAATCGGTTGACTCAGACCGGGATTCAGGTTAAGTTGAAGATTGTGAGGGACAGAAGAAAAGGGTGGAGTTTGTTTGCCGACCAGTTCATCCCCAAGGGTCGGTTTGTGTGCGAGTATGCAGGTGAACTATTGACAACAAAGGAATCAAGACTGCGGCAAGAAATGTATGATGAACTTTCGTCGGGTGGTCATTTCTCCCCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCCAAAAAGGCATGTCTGAGACTCAATATTGATGCCACAAGAATCGGAAATGTCTCAAGGTTCATCAACCATTCTTGCGACGGAGGTAATTTGTCCACAGCTCTTGTTAGAAGCTCAGGGGCTTTGCTTCCACGTCTTTGCTTTTTTGCTTCAGATGACATAAAAGTGGATGAAGAGCTTACATTTAGCTATGGTGAAACTAGGCTGAACTCCAAGGGTTTGCGGTGTTTTTGTGCAAGCTCTTGCTGTGTTGGTATATTACCCTCGGAGCAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

350

Amino Acids

38.45

Weight (kDa)

7.79

Isoelectric Point (pI)

63.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 202 - 323 2.5e-20 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 653
Acc36I ACCTGC 2 cut(s) 140, 653
AccII CGCG 1 cut(s) 177
AciI CCGC 5 cut(s) 145, 172, 175, 697, 997
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 909
AcyI GRCGYC 1 cut(s) 495
AfiI CCNNNNNNNGG 3 cut(s) 325, 521, 642
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 1 cut(s) 580
AjiI CACGTC 1 cut(s) 908
AluBI AGCT 6 cut(s) 112, 875, 888, 952, 963, 1014
AluI AGCT 6 cut(s) 112, 875, 888, 952, 963, 1014
Alw26I GTCTC 3 cut(s) 428, 787, 832
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 329, 677, 980
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 116
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 341
BccI CCATC 6 cut(s) 43, 170, 216, 221, 440, 781
BceAI ACGGC 1 cut(s) 508
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 3 cut(s) 428, 787, 832
BfaI CTAG 1 cut(s) 975
BfuAI ACCTGC 2 cut(s) 140, 653
BisI GCNGC 2 cut(s) 175, 698
BlsI GCNGC 2 cut(s) 176, 699
Bme1390I CCNGG 1 cut(s) 562
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 908
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 2 cut(s) 331, 514
BmrFI CCNGG 1 cut(s) 562
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 5 cut(s) 3, 131, 515, 775, 796
BmuI ACTGGG 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 889
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 6 cut(s) 92, 117, 323, 636, 987, 1038
BsaWI WCCGGW 2 cut(s) 69, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 521, 642
Bse118I RCCGGY 1 cut(s) 528
Bse1I ACTGG 3 cut(s) 51, 516, 625
BseDI CCNNGG 6 cut(s) 92, 117, 323, 636, 987, 1038
BseGI GGATG 7 cut(s) 208, 213, 451, 530, 630, 773, 949
BseLI CCNNNNNNNGG 3 cut(s) 325, 521, 642
BseMII CTCAG 3 cut(s) 569, 782, 903
BseNI ACTGG 3 cut(s) 51, 516, 625
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 4 cut(s) 70, 333, 529, 561
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 3 cut(s) 325, 521, 642
BsmAI GTCTC 3 cut(s) 428, 787, 832
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 194, 235
Bsp19I CCATGG 2 cut(s) 92, 117
BspACI CCGC 5 cut(s) 145, 172, 175, 697, 997
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 3 cut(s) 568, 783, 902
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 331, 514
BspMI ACCTGC 2 cut(s) 140, 653
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 528
BsrI ACTGG 3 cut(s) 51, 516, 625
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 6 cut(s) 92, 117, 323, 636, 987, 1038
BssMI GATC 2 cut(s) 194, 235
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 4 cut(s) 92, 117, 636, 987
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 324, 407
Bst6I CTCTTC 2 cut(s) 426, 942
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 114, 484, 1012
BstDEI CTNAG 4 cut(s) 76, 555, 791, 889
BstDSI CCRYGG 3 cut(s) 92, 117, 323
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 7 cut(s) 208, 213, 451, 530, 630, 773, 949
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 2 cut(s) 197, 238
BstMAI GTCTC 3 cut(s) 428, 787, 832
BstMBI GATC 2 cut(s) 194, 235
BstMWI GCNNNNNNNGC 3 cut(s) 185, 483, 492
BstNSI RCATGY 2 cut(s) 441, 789
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 560
BstUI CGCG 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 3 cut(s) 92, 117, 323
BtrI CACGTC 1 cut(s) 908
BtsCI GGATG 7 cut(s) 208, 213, 451, 530, 630, 773, 949
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
BveI ACCTGC 2 cut(s) 140, 653
Cac8I GCNNGC 3 cut(s) 114, 484, 1012
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 512
CseI GACGC 3 cut(s) 194, 399, 484
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 4 cut(s) 93, 118, 438, 786
DdeI CTNAG 4 cut(s) 76, 555, 791, 889
DpnI GATC 2 cut(s) 196, 237
DpnII GATC 2 cut(s) 194, 235
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 426, 942
EarI CTCTTC 2 cut(s) 426, 942
EciI GGCGGA 1 cut(s) 161
Eco130I CCWWGG 4 cut(s) 92, 117, 636, 987
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoT14I CCWWGG 4 cut(s) 92, 117, 636, 987
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 4 cut(s) 92, 117, 636, 987
FaeI CATG 4 cut(s) 96, 121, 441, 789
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 92, 117, 437, 785
Fnu4HI GCNGC 2 cut(s) 175, 698
FokI GGATG 7 cut(s) 195, 200, 458, 537, 617, 760, 956
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 175, 698
FspBI CTAG 1 cut(s) 975
GlaI GCGC 1 cut(s) 178
GluI GCNGC 2 cut(s) 175, 698
HaeIII GGCC 1 cut(s) 116
HapII CCGG 4 cut(s) 70, 333, 529, 561
HgaI GACGC 3 cut(s) 194, 399, 484
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 4 cut(s) 96, 121, 441, 789
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 2 cut(s) 391, 552
HindII GTYRAC 2 cut(s) 391, 552
HinfI GANTC 9 cut(s) 344, 350, 395, 544, 553, 565, 686, 795, 816
HpaII CCGG 4 cut(s) 70, 333, 529, 561
HphI GGTGA 3 cut(s) 329, 677, 980
Hpy166II GTNNAC 5 cut(s) 391, 512, 552, 668, 870
Hpy188I TCNGA 9 cut(s) 129, 184, 349, 355, 558, 792, 821, 928, 1042
Hpy188III TCNNGA 3 cut(s) 192, 399, 690
Hpy8I GTNNAC 5 cut(s) 391, 512, 552, 668, 870
Hpy99I CGWCG 8 cut(s) 188, 376, 379, 415, 494, 500, 727, 857
HpyAV CCTTC 3 cut(s) 66, 98, 279
HpyCH4III ACNGT 2 cut(s) 324, 407
HpyCH4IV ACGT 2 cut(s) 371, 907
HpyCH4V TGCA 4 cut(s) 16, 135, 662, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 483, 492
HpyF3I CTNAG 4 cut(s) 76, 555, 791, 889
HpySE526I ACGT 2 cut(s) 371, 907
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 4 cut(s) 96, 121, 441, 789
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 194, 235
LguI GCTCTTC 1 cut(s) 942
LmnI GCTCC 2 cut(s) 763, 1042
LweI GCATC 5 cut(s) 3, 131, 515, 775, 796
MaeI CTAG 1 cut(s) 975
MaeII ACGT 2 cut(s) 371, 907
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 196, 237
MboI GATC 2 cut(s) 194, 235
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 862
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 4 cut(s) 344, 353, 547, 789
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 533, 573, 1051
MslI CAYNNNNRTG 2 cut(s) 246, 938
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 4 cut(s) 70, 333, 529, 561
MspR9I CCNGG 1 cut(s) 562
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 185, 483, 492
NciI CCSGG 1 cut(s) 562
NcoI CCATGG 2 cut(s) 92, 117
NdeII GATC 2 cut(s) 194, 235
NlaIII CATG 4 cut(s) 96, 121, 441, 789
NlaIV GGNNCC 2 cut(s) 331, 514
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 2 cut(s) 441, 789
PaeR7I CTCGAG 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 653
PciI ACATGT 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 942
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PfeI GAWTC 5 cut(s) 395, 544, 565, 686, 816
PflFI GACNNNGTC 2 cut(s) 83, 494
PkrI GCNGC 2 cut(s) 176, 699
PleI GAGTC 4 cut(s) 344, 352, 547, 789
PpsI GAGTC 4 cut(s) 344, 352, 547, 789
PscI ACATGT 1 cut(s) 437
PspEI GGTNACC 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 331, 514
PspPI GGNCC 1 cut(s) 512
PspXI VCTCGAGB 1 cut(s) 200
PsuI RGATCY 1 cut(s) 194
PsyI GACNNNGTC 2 cut(s) 83, 494
RseI CAYNNNNRTG 2 cut(s) 246, 938
SapI GCTCTTC 1 cut(s) 942
SaqAI TTAA 3 cut(s) 533, 573, 1051
SatI GCNGC 2 cut(s) 175, 698
Sau3AI GATC 2 cut(s) 194, 235
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 4 cut(s) 344, 353, 547, 789
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 5 cut(s) 3, 131, 515, 775, 796
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 246, 938
SmlI CTYRAG 2 cut(s) 200, 829
SmoI CTYRAG 2 cut(s) 200, 829
Sse9I AATT 1 cut(s) 862
SsiI CCGC 5 cut(s) 145, 172, 175, 697, 997
SspI AATATT 1 cut(s) 802
SspMI CTAG 1 cut(s) 975
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 4 cut(s) 92, 117, 636, 987
TaaI ACNGT 2 cut(s) 324, 407
TaiI ACGT 2 cut(s) 374, 910
TaqI TCGA 5 cut(s) 38, 201, 234, 489, 504
TasI AATT 1 cut(s) 862
TauI GCSGC 2 cut(s) 177, 700
TfiI GAWTC 5 cut(s) 395, 544, 565, 686, 816
Tru1I TTAA 3 cut(s) 533, 573, 1051
Tru9I TTAA 3 cut(s) 533, 573, 1051
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 6 cut(s) 17, 247, 619, 729, 826, 960
TspGWI ACGGA 2 cut(s) 453, 870
TspRI CASTG 1 cut(s) 315
Tth111I GACNNNGTC 2 cut(s) 83, 494
VpaK11BI GGWCC 1 cut(s) 512
XceI RCATGY 2 cut(s) 441, 789
XhoI CTCGAG 1 cut(s) 200
XspI CTAG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.