Rorug05G0230900

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008003
Physical Location & Seq
Forward (+)
24073800 .. 24074369
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0230900.1

Sequence Viewer

Length: 570 bp
ATGAAGTTTCACTTTTGTTCTTCTGGTGCTTTTCTCTTCATCTTCATCATTCTTGTAACAATCTGTTTGAGCATTGAAGCTCAAACCTGCAATCCAAGTGGCAAAATAGTCGGTAAAAAGCCTCCTCCGAGACAATGTAACCCTGAGAACCAGTCTGAATGCTGCAAAAAAGGCAAGCTCTACACCACTTACAAGTGCTCTCCTCCGGTGTCCAAGCATACAAAAGCAACCTTGACGATCAACAGCTTCGAGAAAGGTGGTGATGGTGGTGGAGCGTCTGAATGTGACAATAAATTCCACTCGGATAACACCCGGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAGGAAGAGGTGTTCACACTACATTACCATACATGGTAATGGAAGGAGTGTGAAAGCCAAAGTTGTTGATGAGTGTGACTCCACAATGGGTTGTGATCCTGATCATGATTACCAGCCTCCATGTCCTCACAACATCGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGACTGGGGTGAAATGCAGATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

189

Amino Acids

20.82

Weight (kDa)

8.23

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 27 - 189 2.2e-68 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 336
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 293
AdeI CACNNNGTG 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 319, 336
AgsI TTSAA 2 cut(s) 77, 343
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 4 cut(s) 80, 178, 246, 500
AluI AGCT 4 cut(s) 80, 178, 246, 500
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 293
AsuC2I CCSGG 3 cut(s) 313, 314, 334
AsuHPI GGTGA 2 cut(s) 272, 551
AvaI CYCGRG 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 3 cut(s) 313, 314, 334
BcoDI GTCTC 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 3 cut(s) 313, 314, 334
BmeT110I CYCGRG 1 cut(s) 312
BmrFI CCNGG 3 cut(s) 313, 314, 334
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 2 cut(s) 478, 553
BmuI ACTGGG 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 3 cut(s) 313, 314, 334
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 312, 513
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 336
Bse1I ACTGG 2 cut(s) 151, 539
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 312, 513
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 319, 336
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 151, 539
BseRI GAGGAG 2 cut(s) 114, 192
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 3 cut(s) 206, 313, 333
BslI CCNNNNNNNGG 2 cut(s) 319, 336
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 237, 442, 448
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 2 cut(s) 151, 539
BssECI CCNNGG 2 cut(s) 312, 513
BssMI GATC 3 cut(s) 237, 442, 448
BssT1I CCWWGG 1 cut(s) 513
Bst6I CTCTTC 2 cut(s) 41, 347
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 3 cut(s) 240, 445, 451
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 237, 442, 448
BstMWI GCNNNNNNNGC 2 cut(s) 171, 497
BstSCI CCNGG 3 cut(s) 311, 312, 332
BstV1I GCAGC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 512
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 176
CciI TCATGA 1 cut(s) 451
Cfr9I CCCGGG 1 cut(s) 312
CseI GACGC 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 380, 452, 468
CviJI RGCY 8 cut(s) 80, 121, 178, 246, 404, 463, 500, 512
CviKI_1 RGCY 8 cut(s) 80, 121, 178, 246, 404, 463, 500, 512
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 239, 444, 450
DpnII GATC 3 cut(s) 237, 442, 448
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 41, 347
EarI CTCTTC 2 cut(s) 41, 347
Eco130I CCWWGG 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 3 cut(s) 383, 455, 471
FaiI YATR 5 cut(s) 219, 377, 381, 453, 469
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 379, 451, 467
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 512
HapII CCGG 3 cut(s) 206, 313, 333
HgaI GACGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 383, 455, 471
HinfI GANTC 1 cut(s) 425
HpaII CCGG 3 cut(s) 206, 313, 333
HphI GGTGA 2 cut(s) 272, 551
Hpy166II GTNNAC 2 cut(s) 330, 362
Hpy188I TCNGA 5 cut(s) 129, 157, 280, 304, 562
Hpy188III TCNNGA 3 cut(s) 250, 446, 452
Hpy8I GTNNAC 2 cut(s) 330, 362
HpyAV CCTTC 2 cut(s) 384, 502
HpyCH4V TGCA 3 cut(s) 90, 165, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 497
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 3 cut(s) 383, 455, 471
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 237, 442, 448
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 2 cut(s) 478, 553
MaeIII GTNAC 4 cut(s) 55, 137, 284, 422
MalI GATC 3 cut(s) 239, 444, 450
MboI GATC 3 cut(s) 237, 442, 448
MboII GAAGA 4 cut(s) 12, 28, 34, 364
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 7 cut(s) 132, 135, 213, 348, 474, 483, 502
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 3 cut(s) 206, 313, 333
MspR9I CCNGG 3 cut(s) 313, 314, 334
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 171, 497
NciI CCSGG 3 cut(s) 313, 314, 334
NdeII GATC 3 cut(s) 237, 442, 448
NlaIII CATG 3 cut(s) 383, 455, 471
NmuCI GTSAC 2 cut(s) 284, 422
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 512
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 237, 442, 448
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 313, 314, 334
SduI GDGCHC 1 cut(s) 200
SetI ASST 8 cut(s) 82, 89, 180, 233, 248, 259, 359, 502
SfaNI GCATC 2 cut(s) 478, 553
SmaI CCCGGG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 512
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 3 cut(s) 311, 312, 332
StyI CCWWGG 1 cut(s) 513
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 293
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseFI GTSAC 2 cut(s) 284, 422
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 2 cut(s) 284, 422
TspDTI ATGAA 3 cut(s) 17, 28, 34
TspMI CCCGGG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 293
XmaI CCCGGG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.