RchiOBHm_Chr5g0046691

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008003
Physical Location & Seq
Reverse (-)
42907602 .. 42910150
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32468

Sequence Viewer

Length: 1035 bp
ATGCAGTCGCCACCAACAACACCATCGAAACGCAATACCAGTCCTTCCCTTTTCTTCCGGTGCTTAGACCTCGTCCTTCCATGGCTAACCCCACAAGAGCTGGCCATGGCATCTCTGACCTGCACCACCCTCTGCAACCTCTCCAAGTCCATCACTCTCCGCCGCGCCTCCGACGCTTCCAGATCCCTCGAGCCCCATCCCATCCCATTCCGTAACTCACTCGATCAACACCCTTATGCCTACTTCATCTACACCCCTTCCTCTCTAACCCCATCATCTTCTTCTTCTTCACTGCTTCGCCAACCGTGGGGTTCCAGTCACTACGAGTCAGACTCGGACACCAGAACTGAAACGTCGTCGTTGCGTTTTGTTGACGAATCGGGAAACTGTGCGTCGTCTGGGTGTGAATGTGCAGAGACATGTGAGGATGGGAAAGAGGGGTGTCCGTGTGTTGTCGGCTTTGCTGGCTTCGACGGCGTCGTTTTCGAGTGTGGACCCAGTTGTGGATGCCGGTTAAGTTGTGGGAATCGGTTGACTCAGACCGGGATTCAGGTTAAGTTGAAGATTGTGAGGGACAGAAGAAAAGGGTGGGGTTTGTATGCCGACCAGTTCATCCCAAAGGGTCGGTTTGTGTGCGAGTATGCAGGTGAACTATTGACAACAAAGGAATCAAGACTGCGGCAAGAAATGTATGATGAACTTTCGTCCGGTGGTCATTTCTCCCCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCCAAAAAGGCATGTCTGAGACTCAATATTGATGCCACAAGAATCGGAAATGTCTCAAGGTTCATCAACCATTCTTGCGACGGAGGTAATTTGTCCACAGCTCTTGTTAGAAGCTCAGGGGCTTTGCTTCCACGTCTTTGCTTTTTTGCTTCAGATGACATAAAAGTGGATGAAGAGCTTACATTTAGCTATGGTGAAACTAGGCTGAACTCCAAGGGTTTGCGGTGTTTTTGTGCAAGCTCTTGCTGTGTTGGTATATTACCTTCGGAGCAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

344

Amino Acids

37.72

Weight (kDa)

7.39

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 196 - 317 6.3e-21 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 635
Acc36I ACCTGC 2 cut(s) 128, 635
AccII CGCG 1 cut(s) 165
AciI CCGC 4 cut(s) 160, 163, 679, 979
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 307, 503
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 562
AjiI CACGTC 1 cut(s) 890
AluBI AGCT 6 cut(s) 100, 857, 870, 934, 945, 996
AluI AGCT 6 cut(s) 100, 857, 870, 934, 945, 996
Alw26I GTCTC 3 cut(s) 410, 769, 814
AlwI GGATC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 659, 962
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 494
BalI TGGCCA 1 cut(s) 104
BanII GRGCYC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 1003, 1035
BccI CCATC 7 cut(s) 31, 158, 204, 209, 280, 422, 763
BceAI ACGGC 1 cut(s) 490
BcnI CCSGG 1 cut(s) 544
BcoDI GTCTC 3 cut(s) 410, 769, 814
BfaI CTAG 1 cut(s) 957
BfuAI ACCTGC 2 cut(s) 128, 635
BisI GCNGC 2 cut(s) 163, 680
BlsI GCNGC 2 cut(s) 164, 681
Bme1390I CCNGG 1 cut(s) 544
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 2 cut(s) 313, 496
BmrFI CCNGG 1 cut(s) 544
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 4 cut(s) 119, 497, 757, 778
BmuI ACTGGG 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 871
BpuEI CTTGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 544
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 80, 105, 305, 969
BsaWI WCCGGW 2 cut(s) 57, 707
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 503
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 4 cut(s) 39, 315, 498, 607
BseDI CCNNGG 4 cut(s) 80, 105, 305, 969
BseGI GGATG 7 cut(s) 196, 201, 433, 512, 612, 755, 931
BseLI CCNNNNNNNGG 2 cut(s) 307, 503
BseMII CTCAG 3 cut(s) 551, 764, 885
BseNI ACTGG 4 cut(s) 39, 315, 498, 607
BsgI GTGCAG 2 cut(s) 106, 432
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 58, 511, 543, 708
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 2 cut(s) 307, 503
BsmAI GTCTC 3 cut(s) 410, 769, 814
BsmFI GGGAC 1 cut(s) 587
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 182, 223
Bsp19I CCATGG 2 cut(s) 80, 105
BspACI CCGC 4 cut(s) 160, 163, 679, 979
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 550, 765, 884
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 313, 496
BspMI ACCTGC 2 cut(s) 128, 635
BspPI GGATC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 924
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 4 cut(s) 39, 315, 498, 607
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 4 cut(s) 80, 105, 305, 969
BssMI GATC 2 cut(s) 182, 223
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 3 cut(s) 80, 105, 969
Bst4CI ACNGT 2 cut(s) 306, 389
Bst6I CTCTTC 1 cut(s) 924
BstACI GRCGYC 1 cut(s) 477
BstC8I GCNNGC 3 cut(s) 102, 466, 994
BstDEI CTNAG 4 cut(s) 64, 537, 773, 871
BstDSI CCRYGG 3 cut(s) 80, 105, 305
BstF5I GGATG 7 cut(s) 196, 201, 433, 512, 612, 755, 931
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 2 cut(s) 185, 226
BstMAI GTCTC 3 cut(s) 410, 769, 814
BstMBI GATC 2 cut(s) 182, 223
BstMWI GCNNNNNNNGC 3 cut(s) 173, 465, 474
BstNSI RCATGY 2 cut(s) 423, 771
BstSCI CCNGG 1 cut(s) 542
BstUI CGCG 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 3 cut(s) 80, 105, 305
BtrI CACGTC 1 cut(s) 890
BtsCI GGATG 7 cut(s) 196, 201, 433, 512, 612, 755, 931
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 2 cut(s) 128, 635
Cac8I GCNNGC 3 cut(s) 102, 466, 994
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 3 cut(s) 182, 381, 466
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CviAII CATG 4 cut(s) 81, 106, 420, 768
DdeI CTNAG 4 cut(s) 64, 537, 773, 871
DpnI GATC 2 cut(s) 184, 225
DpnII GATC 2 cut(s) 182, 223
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 3 cut(s) 80, 105, 969
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 188
EcoT14I CCWWGG 3 cut(s) 80, 105, 969
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 3 cut(s) 80, 105, 969
FaeI CATG 4 cut(s) 84, 109, 423, 771
FaqI GGGAC 1 cut(s) 587
FatI CATG 4 cut(s) 80, 105, 419, 767
Fnu4HI GCNGC 2 cut(s) 163, 680
FokI GGATG 7 cut(s) 183, 188, 440, 519, 599, 742, 938
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 163, 680
FspBI CTAG 1 cut(s) 957
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 163, 680
HaeIII GGCC 1 cut(s) 104
HapII CCGG 4 cut(s) 58, 511, 543, 708
HgaI GACGC 3 cut(s) 182, 381, 466
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 84, 109, 423, 771
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 2 cut(s) 373, 534
HindII GTYRAC 2 cut(s) 373, 534
HinfI GANTC 9 cut(s) 326, 332, 377, 526, 535, 547, 668, 777, 798
HpaII CCGG 4 cut(s) 58, 511, 543, 708
HphI GGTGA 2 cut(s) 659, 962
Hpy166II GTNNAC 5 cut(s) 373, 494, 534, 650, 852
Hpy188I TCNGA 9 cut(s) 117, 172, 331, 337, 540, 774, 803, 910, 1024
Hpy188III TCNNGA 3 cut(s) 180, 381, 672
Hpy8I GTNNAC 5 cut(s) 373, 494, 534, 650, 852
Hpy99I CGWCG 7 cut(s) 176, 358, 361, 397, 476, 482, 839
HpyAV CCTTC 4 cut(s) 54, 86, 267, 1029
HpyCH4III ACNGT 2 cut(s) 306, 389
HpyCH4IV ACGT 2 cut(s) 353, 889
HpyCH4V TGCA 6 cut(s) 4, 123, 135, 413, 644, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 465, 474
HpyF3I CTNAG 4 cut(s) 64, 537, 773, 871
HpySE526I ACGT 2 cut(s) 353, 889
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 84, 109, 423, 771
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 182, 223
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 2 cut(s) 745, 1024
LweI GCATC 4 cut(s) 119, 497, 757, 778
MaeI CTAG 1 cut(s) 957
MaeII ACGT 2 cut(s) 353, 889
MaeIII GTNAC 2 cut(s) 212, 317
MalI GATC 2 cut(s) 184, 225
MboI GATC 2 cut(s) 182, 223
MboII GAAGA 9 cut(s) 46, 270, 273, 276, 279, 574, 591, 743, 941
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 1 cut(s) 844
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 4 cut(s) 326, 335, 529, 771
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 515, 555, 1033
MslI CAYNNNNRTG 2 cut(s) 234, 920
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 4 cut(s) 58, 511, 543, 708
MspR9I CCNGG 1 cut(s) 544
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 173, 465, 474
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 2 cut(s) 80, 105
NdeII GATC 2 cut(s) 182, 223
NlaIII CATG 4 cut(s) 84, 109, 423, 771
NlaIV GGNNCC 2 cut(s) 313, 496
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 2 cut(s) 423, 771
PaeR7I CTCGAG 1 cut(s) 188
PaqCI CACCTGC 1 cut(s) 635
PciI ACATGT 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PfeI GAWTC 5 cut(s) 377, 526, 547, 668, 798
PflFI GACNNNGTC 2 cut(s) 71, 476
PkrI GCNGC 2 cut(s) 164, 681
PleI GAGTC 4 cut(s) 326, 334, 529, 771
PpsI GAGTC 4 cut(s) 326, 334, 529, 771
PscI ACATGT 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 313, 496
PspPI GGNCC 1 cut(s) 494
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 2 cut(s) 71, 476
RseI CAYNNNNRTG 2 cut(s) 234, 920
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 3 cut(s) 515, 555, 1033
SatI GCNGC 2 cut(s) 163, 680
Sau3AI GATC 2 cut(s) 182, 223
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 4 cut(s) 326, 335, 529, 771
ScrFI CCNGG 1 cut(s) 544
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 4 cut(s) 119, 497, 757, 778
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 494
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 234, 920
SmlI CTYRAG 2 cut(s) 188, 811
SmoI CTYRAG 2 cut(s) 188, 811
Sse9I AATT 1 cut(s) 844
SsiI CCGC 4 cut(s) 160, 163, 679, 979
SspI AATATT 1 cut(s) 784
SspMI CTAG 1 cut(s) 957
StyD4I CCNGG 1 cut(s) 542
StyI CCWWGG 3 cut(s) 80, 105, 969
TaaI ACNGT 2 cut(s) 306, 389
TaiI ACGT 2 cut(s) 356, 892
TaqI TCGA 5 cut(s) 26, 189, 222, 471, 486
TasI AATT 1 cut(s) 844
TauI GCSGC 2 cut(s) 165, 682
TfiI GAWTC 5 cut(s) 377, 526, 547, 668, 798
Tru1I TTAA 3 cut(s) 515, 555, 1033
Tru9I TTAA 3 cut(s) 515, 555, 1033
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 5 cut(s) 235, 601, 711, 808, 942
TspGWI ACGGA 3 cut(s) 200, 435, 852
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 2 cut(s) 71, 476
VpaK11BI GGWCC 1 cut(s) 494
XceI RCATGY 2 cut(s) 423, 771
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.