Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000292.1

Orthogroup ID

OG0008003

Physical Location & Seq

Genomic Coordinates Reverse (-)

114790 .. 119687

Gene Structure 4898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000292.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgaacaagaagatgcagtcgccaccaacaacaccatcgaaacgcaataccagtccttcccttttcttccggtgcttagacctcgtccttccatggctaaccccacaagagctggccatggcatctctgacctgcaccaccctccgcaacctctccaagtccatcactttccgccgcgcctccgacgcttccagatccctcgagccccatcccatcccattccataactcactcgatcaacacccttatgcctacttcatctacgccccttcctctctaacccaatcatcttcttcttcttcttcttcactgcttcgccaaccgtggggttccagtcaccacgagtcagactcggacaccagaactgaaacgtcgtcgttgcgttttgttgacgaatcgggaaactgtgcgtcgtctgggtgtgaatgtgaagagacatgtgaggatgggaaagaggggtgtccgtgtgttgtcggctttgctggcttcgacggcgtcgttttcgagtgtggacccagttgtggatgccggttaagttgtgggaatcggttgactcagaccgggattcaggttaagttgaagattgtgagggacagaagaaaagggtggagtttgtttgccgaccagttcatccccaagggtcggtttgtgtgcgagtatgcaggtgaactattgacaacaaaggaatcaagactgcggcaagaaatttatgatgaactttcgtcgggtggtcatttctcccctgctcttttggttgtgagggagcatcttccatccaaaaaggcatgtctgagactcaatattgatgccacaagaatcggaaatgtctcaaggttcatcaaccattcttgcgacggaggtaatttgtccacagctcttgttagaagctcaggggctttgcttccacgtctttgcttttttgcttcagatgacataaaagtggatgaagagcttacatttagctatggtgaaactaggctgaactccaagggtgtcattatccctaaactggttccccgtgaagcgaacaaagcagctcacatagcagcttcgcttgcctatcaatcagtgggtcttcgtagatgggctgatcagccaccaccttcccttgcaatagtgctccaaaacgttggcctcccttgcccccatgttgaggagatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Pre-SET SET

Protein Analysis

387

Amino Acids

42.52

Weight (kDa)

8.09

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03750 AT3G03750
fragaria_vesca	FvH4_2g27840 FvH4_2g27840 FvH4_2g27840 FvH4_3g25420
malus_domestica	MD12G1009500.v1.1
prunus_persica	Prupe.7G011400_v2.0.a1 Prupe.7G011400_v2.0.a1
pyrus_communis	pycom09g15010 pycom12g00730
rosa_chinensis	RchiOBHm_Chr5g0046691
rosa_laevigata	RLG00000034432
rosa_multiflora	Rmu_sc0000292.1_g000019 Rmu_sc0017747.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034670
rosa_rugosa	Rorug05G0230800 Rorug05G0230900 Rorug05G0231000
rosa_samantha	Rh5AG310800 Rh5BG319200 Rh5CG345100 Rh5DG329800
rosa_wichuraiana	Rw5G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	653
Acc36I	ACCTGC	2 cut(s)	140, 653
AccII	CGCG	1 cut(s)	177
AciI	CCGC	4 cut(s)	145, 172, 175, 697
AclI	AACGTT	1 cut(s)	1128
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	909
AcyI	GRCGYC	1 cut(s)	495
AfiI	CCNNNNNNNGG	5 cut(s)	325, 521, 642, 1009, 1153
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	580
AjiI	CACGTC	1 cut(s)	908
AluBI	AGCT	7 cut(s)	112, 875, 888, 952, 963, 1037, 1049
AluI	AGCT	7 cut(s)	112, 875, 888, 952, 963, 1037, 1049
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	3 cut(s)	428, 787, 832
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	114, 1132
ApeKI	GCWGC	2 cut(s)	1034, 1046
ApoI	RAATTY	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	3 cut(s)	329, 677, 980
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	2 cut(s)	1046, 1058
BccI	CCATC	7 cut(s)	43, 170, 216, 221, 440, 781, 1077
BceAI	ACGGC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	1090
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	3 cut(s)	428, 787, 832
BfaI	CTAG	1 cut(s)	975
BfuAI	ACCTGC	2 cut(s)	140, 653
BisI	GCNGC	4 cut(s)	175, 698, 1035, 1047
BlsI	GCNGC	4 cut(s)	176, 699, 1036, 1048
Bme1390I	CCNGG	1 cut(s)	562
Bme18I	GGWCC	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	908
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	3 cut(s)	331, 514, 1014
BmrFI	CCNGG	1 cut(s)	562
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	5 cut(s)	3, 131, 515, 775, 796
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	1067
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
Bpu10I	CCTNAGC	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	814
BpuMI	CCSGG	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	5 cut(s)	92, 117, 323, 636, 987
BsaWI	WCCGGW	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	5 cut(s)	325, 521, 642, 1009, 1153
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	5 cut(s)	51, 333, 516, 625, 1014
BseDI	CCNNGG	5 cut(s)	92, 117, 323, 636, 987
BseGI	GGATG	7 cut(s)	208, 213, 451, 530, 630, 773, 949
BseLI	CCNNNNNNNGG	5 cut(s)	325, 521, 642, 1009, 1153
BseMII	CTCAG	3 cut(s)	569, 782, 903
BseNI	ACTGG	5 cut(s)	51, 333, 516, 625, 1014
BseXI	GCAGC	2 cut(s)	1046, 1058
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	116, 1134
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	70, 529, 561
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	5 cut(s)	325, 521, 642, 1009, 1153
BsmAI	GTCTC	3 cut(s)	428, 787, 832
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	116, 1134
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	207, 1122
Bsp143I	GATC	3 cut(s)	194, 235, 1090
Bsp19I	CCATGG	2 cut(s)	92, 117
BspACI	CCGC	4 cut(s)	145, 172, 175, 697
BspANI	GGCC	2 cut(s)	116, 1134
BspCNI	CTCAG	3 cut(s)	568, 783, 902
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	331, 514, 1014
BspMI	ACCTGC	2 cut(s)	140, 653
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	942
BsrFI	RCCGGY	1 cut(s)	528
BsrI	ACTGG	5 cut(s)	51, 333, 516, 625, 1014
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	5 cut(s)	92, 117, 323, 636, 987
BssMI	GATC	3 cut(s)	194, 235, 1090
BssNI	GRCGYC	1 cut(s)	495
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	4 cut(s)	92, 117, 636, 987
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	324, 407
Bst6I	CTCTTC	2 cut(s)	426, 942
BstACI	GRCGYC	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	114, 484, 1056
BstDEI	CTNAG	4 cut(s)	76, 555, 791, 889
BstDSI	CCRYGG	3 cut(s)	92, 117, 323
BstF5I	GGATG	7 cut(s)	208, 213, 451, 530, 630, 773, 949
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	3 cut(s)	197, 238, 1093
BstMAI	GTCTC	3 cut(s)	428, 787, 832
BstMBI	GATC	3 cut(s)	194, 235, 1090
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 483, 492, 1031, 1043, 1055, 1140
BstNSI	RCATGY	2 cut(s)	441, 789
BstSCI	CCNGG	1 cut(s)	560
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	1046, 1058
BstV2I	GAAGAC	1 cut(s)	1067
BstX2I	RGATCY	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	1130
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	116, 1134
BtgI	CCRYGG	3 cut(s)	92, 117, 323
BtrI	CACGTC	1 cut(s)	908
BtsCI	GGATG	7 cut(s)	208, 213, 451, 530, 630, 773, 949
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	308, 1074
BveI	ACCTGC	2 cut(s)	140, 653
Cac8I	GCNNGC	3 cut(s)	114, 484, 1056
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	3 cut(s)	194, 399, 484
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	5 cut(s)	93, 118, 438, 786, 1148
DdeI	CTNAG	4 cut(s)	76, 555, 791, 889
DpnI	GATC	3 cut(s)	196, 237, 1092
DpnII	GATC	3 cut(s)	194, 235, 1090
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	426, 942
EarI	CTCTTC	2 cut(s)	426, 942
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	4 cut(s)	92, 117, 636, 987
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	200
EcoT14I	CCWWGG	4 cut(s)	92, 117, 636, 987
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	4 cut(s)	92, 117, 636, 987
FaeI	CATG	5 cut(s)	96, 121, 441, 789, 1151
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	5 cut(s)	92, 117, 437, 785, 1147
FbaI	TGATCA	1 cut(s)	1090
Fnu4HI	GCNGC	4 cut(s)	175, 698, 1035, 1047
FokI	GGATG	7 cut(s)	195, 200, 458, 537, 617, 760, 956
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	175, 698, 1035, 1047
FspBI	CTAG	1 cut(s)	975
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	175, 698, 1035, 1047
HaeIII	GGCC	2 cut(s)	116, 1134
HapII	CCGG	3 cut(s)	70, 529, 561
HgaI	GACGC	3 cut(s)	194, 399, 484
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	96, 121, 441, 789, 1151
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	2 cut(s)	391, 552
HindII	GTYRAC	2 cut(s)	391, 552
HinfI	GANTC	9 cut(s)	344, 350, 395, 544, 553, 565, 686, 795, 816
HpaII	CCGG	3 cut(s)	70, 529, 561
HphI	GGTGA	3 cut(s)	329, 677, 980
Hpy166II	GTNNAC	5 cut(s)	391, 512, 552, 668, 870
Hpy188I	TCNGA	8 cut(s)	129, 184, 349, 355, 558, 792, 821, 928
Hpy188III	TCNNGA	3 cut(s)	192, 399, 690
Hpy8I	GTNNAC	5 cut(s)	391, 512, 552, 668, 870
Hpy99I	CGWCG	8 cut(s)	188, 376, 379, 415, 494, 500, 727, 857
HpyAV	CCTTC	4 cut(s)	66, 98, 279, 1113
HpyCH4III	ACNGT	2 cut(s)	324, 407
HpyCH4IV	ACGT	3 cut(s)	371, 907, 1128
HpyCH4V	TGCA	4 cut(s)	16, 135, 662, 1112
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 483, 492, 1031, 1043, 1055, 1140
HpyF3I	CTNAG	4 cut(s)	76, 555, 791, 889
HpySE526I	ACGT	3 cut(s)	371, 907, 1128
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	5 cut(s)	96, 121, 441, 789, 1151
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	1090
Kzo9I	GATC	3 cut(s)	194, 235, 1090
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	2 cut(s)	763, 1125
Lsp1109I	GCAGC	2 cut(s)	1046, 1058
LweI	GCATC	5 cut(s)	3, 131, 515, 775, 796
MaeI	CTAG	1 cut(s)	975
MaeII	ACGT	3 cut(s)	371, 907, 1128
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	196, 237, 1092
MboI	GATC	3 cut(s)	194, 235, 1090
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	207, 1122
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	2 cut(s)	705, 862
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	4 cut(s)	344, 353, 547, 789
MmeI	TCCRAC	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	533, 573
MslI	CAYNNNNRTG	2 cut(s)	246, 938
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	3 cut(s)	70, 529, 561
MspR9I	CCNGG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	7 cut(s)	185, 483, 492, 1031, 1043, 1055, 1140
NciI	CCSGG	1 cut(s)	562
NcoI	CCATGG	2 cut(s)	92, 117
NdeII	GATC	3 cut(s)	194, 235, 1090
NlaIII	CATG	5 cut(s)	96, 121, 441, 789, 1151
NlaIV	GGNNCC	3 cut(s)	331, 514, 1014
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	2 cut(s)	441, 789
PaeR7I	CTCGAG	1 cut(s)	200
PaqCI	CACCTGC	1 cut(s)	653
PciI	ACATGT	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	5 cut(s)	395, 544, 565, 686, 816
PflFI	GACNNNGTC	2 cut(s)	83, 494
PkrI	GCNGC	4 cut(s)	176, 699, 1036, 1048
PleI	GAGTC	4 cut(s)	344, 352, 547, 789
PpsI	GAGTC	4 cut(s)	344, 352, 547, 789
PscI	ACATGT	1 cut(s)	437
Psp1406I	AACGTT	1 cut(s)	1128
PspN4I	GGNNCC	3 cut(s)	331, 514, 1014
PspPI	GGNCC	1 cut(s)	512
PspXI	VCTCGAGB	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	194
PsyI	GACNNNGTC	2 cut(s)	83, 494
RseI	CAYNNNNRTG	2 cut(s)	246, 938
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	2 cut(s)	533, 573
SatI	GCNGC	4 cut(s)	175, 698, 1035, 1047
Sau3AI	GATC	3 cut(s)	194, 235, 1090
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	4 cut(s)	344, 353, 547, 789
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	2 cut(s)	207, 1122
SfaNI	GCATC	5 cut(s)	3, 131, 515, 775, 796
Sfr274I	CTCGAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	200
SmiMI	CAYNNNNRTG	2 cut(s)	246, 938
SmlI	CTYRAG	2 cut(s)	200, 829
SmoI	CTYRAG	2 cut(s)	200, 829
Sse9I	AATT	2 cut(s)	705, 862
SsiI	CCGC	4 cut(s)	145, 172, 175, 697
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	1 cut(s)	975
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	4 cut(s)	92, 117, 636, 987
TaaI	ACNGT	2 cut(s)	324, 407
TaiI	ACGT	3 cut(s)	374, 910, 1131
TaqI	TCGA	5 cut(s)	38, 201, 234, 489, 504
TasI	AATT	2 cut(s)	705, 862
TauI	GCSGC	2 cut(s)	177, 700
TfiI	GAWTC	5 cut(s)	395, 544, 565, 686, 816
Tru1I	TTAA	2 cut(s)	533, 573
Tru9I	TTAA	2 cut(s)	533, 573
TscAI	CASTG	2 cut(s)	315, 1074
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	1034, 1046
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	6 cut(s)	17, 247, 619, 729, 826, 960
TspGWI	ACGGA	2 cut(s)	453, 870
TspRI	CASTG	2 cut(s)	315, 1074
Tth111I	GACNNNGTC	2 cut(s)	83, 494
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	2 cut(s)	441, 789
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.