Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008003

Physical Location & Seq

Genomic Coordinates Reverse (-)

1506395 .. 1510090

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAAAAATCTTTTTCTTCGAAGGATGCAGCAAAACCAGTCACCACCATCCAAACGCAACCACTCTCCTTCCCTCCTCCTCCAATGCTCAGAGCTCGTCCTTTCATGGCTGACCCCACAAGAACTCGCCACCATCTCTCTCACCTGCTCCACCCTCCACACAATCTCTAAGTCCATCACTCTCCGCCGAGCCTCCGACGCCTCCAGAGCCTTCGAGAGTCATCCCATTCCATTCCACAACTCCGTCGATGAACACCCGTATGCCTACTTCATCTACACCCCATCTCAAATTCCTTCTTCCTCTTCTCAATTTTTAGGGCGCCAATCTTGGGGCTCCAGTTCTTCTGCACACAAATCGAACTCGGTGGCTGGACTTGGAGTTCAAACGCTGCGTTTCGTGGACGAGTCGGGAGAGTGTGCGTGTGGGTGTGAATGCGAGGCATGTGGGGAAGAGGGAGATGGGGGTGATGGGTGTCCGTGTTTTGGTGGCTTTAACGACGTCGTTGCGGAGTGTGGGCCGAGTTGTGAGTGTGGGTTGGATTGTGGCAATAGGTTGACTCAGAGAGGGATTGAGATTAAGTTGAAGATTCTGAGGGATGGGCGAAAAGGGTGGAGTTTGTATGCGGACCAGTTCATTCCAAAGGGTCGGTTTGTTTGTGAGTATGCAGGTGAACTCTTGACAACCAAAGAAGCAAGATCGCGGCAGCAGATATATGATGAGCTTGCATCAGGTGGTCATTTTTCCCCTGCTCTTTTGGTTGTGAGGGAGCATATGCCATCCAGAAAGGCATGTCTAAGATACAATATTGATGCGACAAGAGCTGGAAATGTATCAAGGTTCATCAACCATTCGTGTGATGGTGGTAATCTATCCACAGCACTGGTGAGAAGCTCAGGTGCTTTACTCCCACGCCTTTGCTTTTTCGCTTCGAAAGACATAAAAGAAGATGAAGAGCTTACTTTTAGCTATGGTGAAATTAGGGAAAGGTCAAAGGGGTTGCAGTGCTTTTGTGGGAGCTCTTGTTGTCTCGGAATTTTGCCCTCAGAGCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Pre-SET SET

Protein Analysis

352

Amino Acids

38.46

Weight (kDa)

6.74

Isoelectric Point (pI)

67.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03750 AT3G03750
fragaria_vesca	FvH4_2g27840 FvH4_2g27840 FvH4_2g27840 FvH4_3g25420
malus_domestica	MD12G1009500.v1.1
prunus_persica	Prupe.7G011400_v2.0.a1 Prupe.7G011400_v2.0.a1
pyrus_communis	pycom09g15010 pycom12g00730
rosa_chinensis	RchiOBHm_Chr5g0046691
rosa_laevigata	RLG00000034432
rosa_multiflora	Rmu_sc0000292.1_g000019 Rmu_sc0017747.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034670
rosa_rugosa	Rorug05G0230800 Rorug05G0230900 Rorug05G0231000
rosa_samantha	Rh5AG310800 Rh5BG319200 Rh5CG345100 Rh5DG329800
rosa_wichuraiana	Rw5G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	152, 656
AatII	GACGTC	1 cut(s)	501
Acc36I	ACCTGC	2 cut(s)	152, 656
AccB1I	GGYRCC	1 cut(s)	318
AccII	CGCG	1 cut(s)	700
AciI	CCGC	4 cut(s)	184, 506, 623, 700
AcsI	RAATTY	2 cut(s)	288, 1032
AcyI	GRCGYC	3 cut(s)	198, 319, 498
AfiI	CCNNNNNNNGG	2 cut(s)	328, 482
AgsI	TTSAA	2 cut(s)	383, 583
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	7 cut(s)	94, 721, 821, 891, 955, 966, 1017
AluI	AGCT	7 cut(s)	94, 721, 821, 891, 955, 966, 1017
Alw21I	GWGCWC	2 cut(s)	96, 1019
Alw26I	GTCTC	1 cut(s)	1031
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	3 cut(s)	28, 388, 703
ApoI	RAATTY	2 cut(s)	288, 1032
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	515, 625
AsuHPI	GGTGA	6 cut(s)	33, 133, 476, 680, 895, 983
AsuII	TTCGAA	2 cut(s)	19, 929
AvaII	GGWCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	3 cut(s)	96, 335, 1019
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
Bbv12I	GWGCWC	2 cut(s)	96, 1019
BbvI	GCAGC	3 cut(s)	40, 375, 715
BccI	CCATC	9 cut(s)	55, 140, 182, 289, 452, 461, 590, 784, 851
BcgI	CGANNNNNNTGC	4 cut(s)	336, 370, 485, 519
BcoDI	GTCTC	1 cut(s)	1031
BfoI	RGCGCY	1 cut(s)	322
BfuAI	ACCTGC	2 cut(s)	152, 656
BisI	GCNGC	4 cut(s)	29, 389, 701, 704
BlsI	GCNGC	4 cut(s)	30, 390, 702, 705
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	515, 625
BmiI	GGNNCC	2 cut(s)	320, 334
BmsI	GCATC	3 cut(s)	15, 734, 799
BpmI	CTGGAG	2 cut(s)	187, 319
Bpu10I	CCTNAGC	1 cut(s)	892
Bpu14I	TTCGAA	2 cut(s)	19, 929
BsaHI	GRCGYC	3 cut(s)	198, 319, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	1006, 1036
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 482
Bse1I	ACTGG	4 cut(s)	37, 336, 628, 885
BseGI	GGATG	5 cut(s)	30, 47, 220, 601, 776
BseLI	CCNNNNNNNGG	2 cut(s)	328, 482
BseMII	CTCAG	5 cut(s)	102, 572, 581, 906, 1056
BseNI	ACTGG	4 cut(s)	37, 336, 628, 885
BseRI	GAGGAG	2 cut(s)	65, 68
BseXI	GCAGC	3 cut(s)	40, 375, 715
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	700
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	96, 1019
BslI	CCNNNNNNNGG	2 cut(s)	328, 482
BsmAI	GTCTC	1 cut(s)	1031
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	517
Bsp119I	TTCGAA	2 cut(s)	19, 929
Bsp1286I	GDGCHC	3 cut(s)	96, 335, 1019
Bsp143I	GATC	1 cut(s)	695
BspACI	CCGC	4 cut(s)	184, 506, 623, 700
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	5 cut(s)	101, 571, 582, 905, 1055
BspFNI	CGCG	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	320, 334
BspMI	ACCTGC	2 cut(s)	152, 656
BspQI	GCTCTTC	1 cut(s)	945
BspT104I	TTCGAA	2 cut(s)	19, 929
BspT107I	GGYRCC	1 cut(s)	318
BsrI	ACTGG	4 cut(s)	37, 336, 628, 885
BssMI	GATC	1 cut(s)	695
BssNI	GRCGYC	3 cut(s)	198, 319, 498
Bst6I	CTCTTC	3 cut(s)	307, 444, 945
BstACI	GRCGYC	3 cut(s)	198, 319, 498
BstBI	TTCGAA	2 cut(s)	19, 929
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	7 cut(s)	88, 168, 558, 590, 794, 892, 1042
BstF5I	GGATG	5 cut(s)	30, 47, 220, 601, 776
BstFNI	CGCG	1 cut(s)	700
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	698
BstMAI	GTCTC	1 cut(s)	1031
BstMBI	GATC	1 cut(s)	695
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 206, 818, 1045
BstNSI	RCATGY	2 cut(s)	444, 792
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	3 cut(s)	40, 375, 715
BstXI	CCANNNNNNTGG	1 cut(s)	880
BsuRI	GGCC	1 cut(s)	517
BtsCI	GGATG	5 cut(s)	30, 47, 220, 601, 776
BtsI	GCAGTG	1 cut(s)	1007
BtsIMutI	CAGTG	2 cut(s)	878, 1007
BveI	ACCTGC	2 cut(s)	152, 656
Cac8I	GCNNGC	1 cut(s)	723
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	515, 625
CseI	GACGC	1 cut(s)	206
CviAII	CATG	3 cut(s)	105, 441, 789
DdeI	CTNAG	7 cut(s)	88, 168, 558, 590, 794, 892, 1042
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	1 cut(s)	697
DpnII	GATC	1 cut(s)	695
Eam1104I	CTCTTC	3 cut(s)	307, 444, 945
EarI	CTCTTC	3 cut(s)	307, 444, 945
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	2 cut(s)	94, 1017
Eco24I	GRGCYC	3 cut(s)	96, 335, 1019
Eco47I	GGWCC	1 cut(s)	625
Eco53kI	GAGCTC	2 cut(s)	94, 1017
EcoICRI	GAGCTC	2 cut(s)	94, 1017
EcoT38I	GRGCYC	3 cut(s)	96, 335, 1019
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
FaeI	CATG	3 cut(s)	108, 444, 792
FatI	CATG	3 cut(s)	104, 440, 788
FauNDI	CATATG	1 cut(s)	771
Fnu4HI	GCNGC	4 cut(s)	29, 389, 701, 704
FokI	GGATG	5 cut(s)	34, 37, 207, 608, 763
FriOI	GRGCYC	3 cut(s)	96, 335, 1019
Fsp4HI	GCNGC	4 cut(s)	29, 389, 701, 704
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	4 cut(s)	29, 389, 701, 704
GsuI	CTGGAG	2 cut(s)	187, 319
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	517
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	3 cut(s)	198, 319, 498
Hin1II	CATG	3 cut(s)	108, 444, 792
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HinfI	GANTC	4 cut(s)	217, 404, 556, 586
HphI	GGTGA	6 cut(s)	33, 133, 476, 680, 895, 983
Hpy166II	GTNNAC	3 cut(s)	400, 555, 671
Hpy188I	TCNGA	6 cut(s)	91, 196, 561, 591, 1031, 1045
Hpy188III	TCNNGA	5 cut(s)	204, 214, 408, 676, 780
Hpy8I	GTNNAC	3 cut(s)	400, 555, 671
Hpy99I	CGWCG	4 cut(s)	200, 248, 500, 503
HpyAV	CCTTC	4 cut(s)	15, 78, 220, 303
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	28, 347, 665, 725, 1000
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 206, 818, 1045
HpyF3I	CTNAG	7 cut(s)	88, 168, 558, 590, 794, 892, 1042
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	3 cut(s)	198, 319, 498
Hsp92II	CATG	3 cut(s)	108, 444, 792
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	695
LguI	GCTCTTC	1 cut(s)	945
LmnI	GCTCC	4 cut(s)	152, 338, 766, 1014
Lsp1109I	GCAGC	3 cut(s)	40, 375, 715
LweI	GCATC	3 cut(s)	15, 734, 799
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	697
MboI	GATC	1 cut(s)	695
MboII	GAAGA	8 cut(s)	8, 288, 294, 333, 461, 595, 956, 962
MhlI	GDGCHC	3 cut(s)	96, 335, 1019
MluCI	AATT	4 cut(s)	288, 308, 975, 1032
Mly113I	GGCGCC	1 cut(s)	319
MlyI	GAGTC	3 cut(s)	226, 413, 550
MmeI	TCCRAC	2 cut(s)	219, 516
MseI	TTAA	3 cut(s)	492, 576, 1054
MslI	CAYNNNNRTG	2 cut(s)	258, 852
Mva1269I	GAATGC	1 cut(s)	437
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	4 cut(s)	197, 206, 818, 1045
NarI	GGCGCC	1 cut(s)	319
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	1 cut(s)	695
NlaIII	CATG	3 cut(s)	108, 444, 792
NlaIV	GGNNCC	2 cut(s)	320, 334
NmeAIII	GCCGAG	2 cut(s)	212, 543
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	2 cut(s)	444, 792
NspV	TTCGAA	2 cut(s)	19, 929
PaqCI	CACCTGC	2 cut(s)	152, 656
PciSI	GCTCTTC	1 cut(s)	945
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	30, 390, 702, 705
PleI	GAGTC	3 cut(s)	225, 412, 550
PluTI	GGCGCC	1 cut(s)	322
PpsI	GAGTC	3 cut(s)	225, 412, 550
Psp124BI	GAGCTC	2 cut(s)	96, 1019
PspN4I	GGNNCC	2 cut(s)	320, 334
PspPI	GGNCC	2 cut(s)	515, 625
RseI	CAYNNNNRTG	2 cut(s)	258, 852
SacI	GAGCTC	2 cut(s)	96, 1019
SapI	GCTCTTC	1 cut(s)	945
SaqAI	TTAA	3 cut(s)	492, 576, 1054
SatI	GCNGC	4 cut(s)	29, 389, 701, 704
Sau3AI	GATC	1 cut(s)	695
Sau96I	GGNCC	2 cut(s)	515, 625
SchI	GAGTC	3 cut(s)	226, 413, 550
SduI	GDGCHC	3 cut(s)	96, 335, 1019
SfaNI	GCATC	3 cut(s)	15, 734, 799
SfoI	GGCGCC	1 cut(s)	320
SfuI	TTCGAA	2 cut(s)	19, 929
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	2 cut(s)	258, 852
Sse9I	AATT	4 cut(s)	288, 308, 975, 1032
SsiI	CCGC	4 cut(s)	184, 506, 623, 700
SspDI	GGCGCC	1 cut(s)	318
SspI	AATATT	1 cut(s)	805
SstI	GAGCTC	2 cut(s)	96, 1019
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	5 cut(s)	19, 213, 246, 356, 929
TasI	AATT	4 cut(s)	288, 308, 975, 1032
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	3 cut(s)	492, 576, 1054
Tru9I	TTAA	3 cut(s)	492, 576, 1054
TscAI	CASTG	2 cut(s)	885, 1007
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	3 cut(s)	28, 388, 703
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	7 cut(s)	17, 93, 259, 264, 622, 829, 963
TspGWI	ACGGA	2 cut(s)	232, 465
TspRI	CASTG	2 cut(s)	885, 1007
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	2 cut(s)	288, 1032
XceI	RCATGY	2 cut(s)	444, 792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
ZraI	GACGTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.