Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008003

Physical Location & Seq

Genomic Coordinates Forward (+)

18307377 .. 18312472

Gene Structure 5096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

TCCCCGTCCAAACGCAACACCCCTCCTTCCCTCTTCTTCCAGTGCTCAGACCTCATCCTCCCATGGCTAACCCCACAAGAGCTAGCCATAGCATCTCTCACCTGCACCACCCTCCGCAACCTCTCCAACTCTATCACTCTCCGCCGCTCCTCCGACGCTTCCAGATCCCTCGAGCCCCTTCCCATCCCCTTCCACAGCTCCCTCGACCAACACCCTTATGCCTTCTTCCTCTATCAACCCACATCTTCACCTTCTTCTAATCTTATACGACAGTCGTGGGGTTCTACTCACCAGAATCCAGAAACGGAGACAAGAACTGAAACGTCGTCGTTATGTTTTGTCGACGAAACTGGAAACTGCGCGTCTTCTGGGTGTGGATGTGAGGAGACATGTGAGGATGGTTGTCCGTGTGTTGTTGGCTTTGGTGGCTTCGACGACGGCGTAGTTTTCGAGTGCAGGCCCAGTTGTGGATGCGGGTTAAGTTGTGGGAATCGGGTGACTCAGAGAGGGATTCGGGTTAAGTTGAAGATTGTGAGGGATAGTAGAAAAGGGTGGGGTTTGTTTGCCGACCAATTCATCCCAAAGGGTCAGTTTGTGTGTGAGTATGCAGGTGAACTATTGACGACCAAGGAATCAAGACTGCGGCAACAAATGTATGATGAACTTTCATCTGGTGGTCACTTCTCCCCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCCAAAATGGCATGTCTGAGACTCAATATTGATGCCACAAGAATTGGAAACGTCTCAAGGTTCATCAATCATTCTTGCGACAGAGGTAATCTATCCACAGCTCTTGTTAGAAGCTCAGGTGTGTTGCTTCCACGTCTTTGCTTTTTTGCTTCAGATGACATAAAAAAAGATGAAGAGCTTACGTTCAGCTATGGTGAAACTAGGCTAAACTCCGAGGGTTTGCGGTGCTTTTGTGGAAGCTCTTGCTGTGTAGGTATATTACCCTCAGAGCAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Pre-SET SET

Protein Analysis

333

Amino Acids

36.5

Weight (kDa)

6.32

Isoelectric Point (pI)

60.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	184 - 305	8.6e-23	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03750 AT3G03750
fragaria_vesca	FvH4_2g27840 FvH4_2g27840 FvH4_2g27840 FvH4_3g25420
malus_domestica	MD12G1009500.v1.1
prunus_persica	Prupe.7G011400_v2.0.a1 Prupe.7G011400_v2.0.a1
pyrus_communis	pycom09g15010 pycom12g00730
rosa_chinensis	RchiOBHm_Chr5g0046691
rosa_laevigata	RLG00000034432
rosa_multiflora	Rmu_sc0000292.1_g000019 Rmu_sc0017747.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034670
rosa_rugosa	Rorug05G0230800 Rorug05G0230900 Rorug05G0231000
rosa_samantha	Rh5AG310800 Rh5BG319200 Rh5CG345100 Rh5DG329800
rosa_wichuraiana	Rw5G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	110, 599
Acc36I	ACCTGC	2 cut(s)	110, 599
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	362
AciI	CCGC	6 cut(s)	115, 142, 145, 474, 643, 943
AclWI	GGATC	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	855
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	526
AjiI	CACGTC	1 cut(s)	854
AluBI	AGCT	7 cut(s)	82, 198, 821, 834, 898, 909, 960
AluI	AGCT	7 cut(s)	82, 198, 821, 834, 898, 909, 960
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	4 cut(s)	302, 380, 733, 778
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	6 cut(s)	91, 240, 281, 508, 623, 926
AsuNHI	GCTAGC	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	47
BccI	CCATC	3 cut(s)	191, 392, 727
BceAI	ACGGC	1 cut(s)	454
BcoDI	GTCTC	4 cut(s)	302, 380, 733, 778
BfaI	CTAG	2 cut(s)	83, 921
BfuAI	ACCTGC	2 cut(s)	110, 599
BisI	GCNGC	2 cut(s)	145, 644
BlsI	GCNGC	2 cut(s)	146, 645
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	854
BmgT120I	GGNCC	1 cut(s)	459
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	4 cut(s)	101, 461, 721, 742
BmtI	GCTAGC	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	760
BsaJI	CCNNGG	3 cut(s)	62, 627, 933
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	3 cut(s)	40, 355, 462
BseDI	CCNNGG	3 cut(s)	62, 627, 933
BseGI	GGATG	7 cut(s)	54, 183, 383, 403, 476, 576, 719
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	5 cut(s)	60, 515, 728, 849, 999
BseNI	ACTGG	3 cut(s)	40, 355, 462
BseRI	GAGGAG	2 cut(s)	139, 398
BsgI	GTGCAG	2 cut(s)	88, 475
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	4 cut(s)	302, 380, 733, 778
BsmBI	CGTCTC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	47, 177
Bsp143I	GATC	1 cut(s)	164
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	6 cut(s)	115, 142, 145, 474, 643, 943
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	5 cut(s)	59, 514, 729, 848, 998
BspFNI	CGCG	1 cut(s)	362
BspMI	ACCTGC	2 cut(s)	110, 599
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	888
BsrBI	CCGCTC	1 cut(s)	147
BsrI	ACTGG	3 cut(s)	40, 355, 462
BssECI	CCNNGG	3 cut(s)	62, 627, 933
BssMI	GATC	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	62, 627
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	38, 888
BstC8I	GCNNGC	2 cut(s)	84, 458
BstDEI	CTNAG	6 cut(s)	46, 501, 737, 835, 985, 996
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	7 cut(s)	54, 183, 383, 403, 476, 576, 719
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	1 cut(s)	167
BstMAI	GTCTC	4 cut(s)	302, 380, 733, 778
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNSI	RCATGY	2 cut(s)	393, 735
BstUI	CGCG	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	854
BtsCI	GGATG	7 cut(s)	54, 183, 383, 403, 476, 576, 719
BtsIMutI	CAGTG	1 cut(s)	47
BveI	ACCTGC	2 cut(s)	110, 599
Cac8I	GCNNGC	2 cut(s)	84, 458
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	2 cut(s)	164, 351
CspCI	CAANNNNNGTGG	4 cut(s)	745, 780, 805, 840
CviAII	CATG	3 cut(s)	63, 390, 732
DdeI	CTNAG	6 cut(s)	46, 501, 737, 835, 985, 996
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	38, 888
EarI	CTCTTC	2 cut(s)	38, 888
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	62, 627
Eco24I	GRGCYC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	62, 627
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	2 cut(s)	62, 627
Esp3I	CGTCTC	1 cut(s)	778
FaeI	CATG	3 cut(s)	66, 393, 735
FatI	CATG	3 cut(s)	62, 389, 731
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	145, 644
FokI	GGATG	7 cut(s)	41, 170, 390, 410, 483, 563, 706
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	145, 644
FspBI	CTAG	2 cut(s)	83, 921
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	145, 644
HaeIII	GGCC	1 cut(s)	460
HgaI	GACGC	2 cut(s)	164, 351
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	66, 393, 735
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	6 cut(s)	295, 490, 499, 511, 632, 741
HphI	GGTGA	6 cut(s)	91, 240, 281, 508, 623, 926
Hpy166II	GTNNAC	2 cut(s)	343, 614
Hpy188I	TCNGA	7 cut(s)	49, 154, 504, 738, 874, 934, 988
Hpy188III	TCNNGA	3 cut(s)	162, 299, 636
Hpy8I	GTNNAC	2 cut(s)	343, 614
Hpy99I	CGWCG	6 cut(s)	158, 328, 331, 347, 437, 440
HpyAV	CCTTC	5 cut(s)	36, 188, 199, 232, 261
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	4 cut(s)	323, 771, 853, 902
HpyCH4V	TGCA	3 cut(s)	105, 456, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	6 cut(s)	46, 501, 737, 835, 985, 996
HpySE526I	ACGT	4 cut(s)	323, 771, 853, 902
Hsp92II	CATG	3 cut(s)	66, 393, 735
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	164
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	3 cut(s)	152, 203, 709
LweI	GCATC	4 cut(s)	101, 461, 721, 742
MaeI	CTAG	2 cut(s)	83, 921
MaeII	ACGT	4 cut(s)	323, 771, 853, 902
MaeIII	GTNAC	2 cut(s)	496, 677
MalI	GATC	1 cut(s)	166
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	1 cut(s)	164
MboII	GAAGA	9 cut(s)	25, 28, 217, 237, 246, 357, 538, 707, 905
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	47, 177
MluCI	AATT	2 cut(s)	572, 762
MlyI	GAGTC	2 cut(s)	493, 735
MmeI	TCCRAC	2 cut(s)	150, 177
MseI	TTAA	2 cut(s)	479, 519
MslI	CAYNNNNRTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	426
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	164
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	66, 393, 735
NmuCI	GTSAC	2 cut(s)	496, 677
NspI	RCATGY	2 cut(s)	393, 735
PaeR7I	CTCGAG	1 cut(s)	170
PaqCI	CACCTGC	2 cut(s)	110, 599
PciI	ACATGT	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	295, 490, 511, 632
PkrI	GCNGC	2 cut(s)	146, 645
PleI	GAGTC	2 cut(s)	493, 735
PpsI	GAGTC	2 cut(s)	493, 735
PscI	ACATGT	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	459
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	479, 519
SatI	GCNGC	2 cut(s)	145, 644
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	2 cut(s)	493, 735
SduI	GDGCHC	2 cut(s)	47, 177
SfaNI	GCATC	4 cut(s)	101, 461, 721, 742
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	170, 775
SmoI	CTYRAG	2 cut(s)	170, 775
Sse9I	AATT	2 cut(s)	572, 762
SsiI	CCGC	6 cut(s)	115, 142, 145, 474, 643, 943
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	2 cut(s)	83, 921
StyI	CCWWGG	2 cut(s)	62, 627
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	4 cut(s)	326, 774, 856, 905
TaqI	TCGA	5 cut(s)	171, 204, 342, 432, 450
TasI	AATT	2 cut(s)	572, 762
TauI	GCSGC	2 cut(s)	147, 646
TfiI	GAWTC	4 cut(s)	295, 490, 511, 632
Tru1I	TTAA	2 cut(s)	479, 519
Tru9I	TTAA	2 cut(s)	479, 519
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	496, 677
Tsp45I	GTSAC	2 cut(s)	496, 677
TspDTI	ATGAA	5 cut(s)	565, 657, 675, 772, 906
TspGWI	ACGGA	2 cut(s)	320, 396
TspRI	CASTG	1 cut(s)	47
XceI	RCATGY	2 cut(s)	393, 735
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	83, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.