Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008003

Physical Location & Seq

Genomic Coordinates Forward (+)

24088037 .. 24089559

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0231000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTAGGAAGCCAACTAAGAAAAAATCCTTTTTCAAGGTCCTGCTTGGTGACTTCTCTAATCATCTGCGTATACCGCCCAAGTTTACCAAGAACCACATCCAACCATCACTTTGCAAATGTGTTCTTAGAGGCCCTAGTGGACAACGATGTGATGTGGAACTGGAAAGGAGAGAGAATGGCTTGTTCTTCCACAATCATGGTTGGCATCGCTTTGTGAAGGATCATCGTCTACAATTTGGGGACTTTCTGGTTTTCCGTTATGATGGTGAATCGAAGTTTAAGGTTAAAATATATGATAGAACTTGTTGTGAGATAGATGTTGAAGTAGCCAAGAGGAGAAATGGCCTTCCTGCTGCTCCCTCGGCGAATGAAGGCTACCAATTAGCTTGGGTAAAAGATGAAATTGTTGACCTGAAAACCGAATACTACAACAGAGACGATACTGAAAATGCTGACAAGAGAAGAAATAATCATATGTCTGGAAAGCCGCCGAGAGTTGAGGATGGTAATAAAGAAACATCAACTGGATCCATCATCTTCAAATCGGAGTATTCATGTTTTAAAGCAACTTTGAAGACAAGGTGTTCACGATATAGGATGACGATTCCAAAGGATCTAGCCGTGACCAAAGGTCTTATGAGTAAGAAGACTATAGAAATTGAAGACTCAACTGGGAGATTGTGGCCTGCTAAACTTGTGAGTCTCACGTCTAAAGAGAACAATAAGACTTGCAGCTTGGCCATGTCAACAGGTTGGGGAGAATGTTCTAAAGCCAACAAGATTGCAGTTGGGGACACCGTTGTTTTTGAGTTTGTTAAACAAAGTGTAATTGGACTTCATATTTTTAGAAAAGGTCTAGGAACAAGAGGAGGCAATAATAGGCCTAACTCTGTGGTACTTGATGCCCCCAACATCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Pre-SET SET

Protein Analysis

308

Amino Acids

35.06

Weight (kDa)

9.66

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	11 - 101	2.1e-17	B3 DNA binding domain
B3	PF02362	189 - 284	9e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03750 AT3G03750
fragaria_vesca	FvH4_2g27840 FvH4_2g27840 FvH4_2g27840 FvH4_3g25420
malus_domestica	MD12G1009500.v1.1
prunus_persica	Prupe.7G011400_v2.0.a1 Prupe.7G011400_v2.0.a1
pyrus_communis	pycom09g15010 pycom12g00730
rosa_chinensis	RchiOBHm_Chr5g0046691
rosa_laevigata	RLG00000034432
rosa_multiflora	Rmu_sc0000292.1_g000019 Rmu_sc0017747.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034670
rosa_rugosa	Rorug05G0230800 Rorug05G0230900 Rorug05G0231000
rosa_samantha	Rh5AG310800 Rh5BG319200 Rh5CG345100 Rh5DG329800
rosa_wichuraiana	Rw5G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	73, 232
AciI	CCGC	2 cut(s)	77, 491
AclWI	GGATC	4 cut(s)	231, 525, 538, 624
AcoI	YGGCCR	1 cut(s)	741
AfaI	GTAC	1 cut(s)	900
AgsI	TTSAA	5 cut(s)	37, 326, 544, 577, 665
AhdI	GACNNNNNGTC	1 cut(s)	633
AjiI	CACGTC	1 cut(s)	711
AluBI	AGCT	2 cut(s)	389, 738
AluI	AGCT	2 cut(s)	389, 738
Alw26I	GTCTC	2 cut(s)	432, 710
AlwI	GGATC	4 cut(s)	231, 525, 538, 624
AoxI	GGCC	5 cut(s)	133, 346, 686, 741, 884
ApeKI	GCWGC	2 cut(s)	356, 735
AspS9I	GGNCC	2 cut(s)	40, 134
AsuHPI	GGTGA	2 cut(s)	62, 281
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	530
BarI	GAAGNNNNNNTAC	2 cut(s)	822, 854
BbsI	GAAGAC	3 cut(s)	584, 656, 672
BbvI	GCAGC	2 cut(s)	343, 747
BccI	CCATC	4 cut(s)	115, 260, 500, 542
BceAI	ACGGC	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	432, 710
BfaI	CTAG	3 cut(s)	138, 620, 860
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	3 cut(s)	357, 491, 736
BlsI	GCNGC	3 cut(s)	358, 492, 737
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	633
BmgBI	CACGTC	1 cut(s)	711
BmgT120I	GGNCC	2 cut(s)	40, 134
BmiI	GGNNCC	1 cut(s)	532
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	217, 895
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	3 cut(s)	584, 656, 672
BsaJI	CCNNGG	1 cut(s)	363
Bse1I	ACTGG	3 cut(s)	168, 532, 679
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	99, 511, 606
BseNI	ACTGG	3 cut(s)	168, 532, 679
BseRI	GAGGAG	2 cut(s)	352, 885
BseXI	GCAGC	2 cut(s)	343, 747
BshFI	GGCC	5 cut(s)	135, 348, 688, 743, 886
BslFI	GGGAC	2 cut(s)	257, 809
BsmAI	GTCTC	2 cut(s)	432, 710
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	257, 809
BsnI	GGCC	5 cut(s)	135, 348, 688, 743, 886
Bsp143I	GATC	3 cut(s)	223, 530, 616
BspACI	CCGC	2 cut(s)	77, 491
BspANI	GGCC	5 cut(s)	135, 348, 688, 743, 886
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	4 cut(s)	231, 525, 538, 624
BsrI	ACTGG	3 cut(s)	168, 532, 679
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	223, 530, 616
BssNAI	GTATAC	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	802
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	2 cut(s)	18, 128
BstF5I	GGATG	3 cut(s)	99, 511, 606
BstKTI	GATC	3 cut(s)	226, 533, 619
BstMAI	GTCTC	2 cut(s)	432, 710
BstMBI	GATC	3 cut(s)	223, 530, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 365
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	343, 747
BstV2I	GAAGAC	3 cut(s)	584, 656, 672
BstX2I	RGATCY	2 cut(s)	530, 616
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	2 cut(s)	530, 616
BstZ17I	GTATAC	1 cut(s)	74
BsuRI	GGCC	5 cut(s)	135, 348, 688, 743, 886
BtgZI	GCGATG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	99, 511, 606
Cac8I	GCNNGC	1 cut(s)	690
Cfr13I	GGNCC	2 cut(s)	40, 134
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	3 cut(s)	200, 558, 745
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	2 cut(s)	18, 128
DpnI	GATC	3 cut(s)	225, 532, 618
DpnII	GATC	3 cut(s)	223, 530, 616
DraI	TTTAAA	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	741
Eam1105I	GACNNNNNGTC	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	886
Eco47I	GGWCC	1 cut(s)	40
EcoO109I	RGGNCCY	2 cut(s)	40, 134
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	3 cut(s)	203, 561, 748
FaqI	GGGAC	2 cut(s)	257, 809
FatI	CATG	3 cut(s)	199, 557, 744
FauNDI	CATATG	1 cut(s)	477
FblI	GTMKAC	2 cut(s)	73, 232
Fnu4HI	GCNGC	3 cut(s)	357, 491, 736
FokI	GGATG	3 cut(s)	86, 518, 613
Fsp4HI	GCNGC	3 cut(s)	357, 491, 736
FspBI	CTAG	3 cut(s)	138, 620, 860
GluI	GCNGC	3 cut(s)	357, 491, 736
HaeIII	GGCC	5 cut(s)	135, 348, 688, 743, 886
Hin1II	CATG	3 cut(s)	203, 561, 748
HincII	GTYRAC	2 cut(s)	412, 750
HindII	GTYRAC	2 cut(s)	412, 750
HinfI	GANTC	4 cut(s)	272, 607, 668, 703
HphI	GGTGA	2 cut(s)	62, 281
Hpy166II	GTNNAC	7 cut(s)	74, 87, 143, 233, 412, 590, 750
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	483, 591, 919
Hpy8I	GTNNAC	7 cut(s)	74, 87, 143, 233, 412, 590, 750
HpyAV	CCTTC	3 cut(s)	214, 359, 368
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	710
HpyCH4V	TGCA	3 cut(s)	117, 735, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 365
HpyF3I	CTNAG	2 cut(s)	18, 128
HpySE526I	ACGT	1 cut(s)	710
Hsp92II	CATG	3 cut(s)	203, 561, 748
Kzo9I	GATC	3 cut(s)	223, 530, 616
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	2 cut(s)	343, 747
LweI	GCATC	2 cut(s)	217, 895
MaeI	CTAG	3 cut(s)	138, 620, 860
MaeII	ACGT	1 cut(s)	710
MaeIII	GTNAC	2 cut(s)	50, 625
MalI	GATC	3 cut(s)	225, 532, 618
MboI	GATC	3 cut(s)	223, 530, 616
MboII	GAAGA	6 cut(s)	181, 477, 532, 589, 661, 677
MflI	RGATCY	2 cut(s)	530, 616
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	5 cut(s)	236, 383, 405, 660, 831
MluNI	TGGCCA	1 cut(s)	743
MlyI	GAGTC	2 cut(s)	662, 712
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	125, 330, 373, 496, 863, 866
Mox20I	TGGCCA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	4 cut(s)	282, 288, 564, 819
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	743
MwoI	GCNNNNNNNGC	2 cut(s)	76, 365
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	3 cut(s)	223, 530, 616
NlaIII	CATG	3 cut(s)	203, 561, 748
NlaIV	GGNNCC	1 cut(s)	532
NmeAIII	GCCGAG	2 cut(s)	344, 519
NmuCI	GTSAC	2 cut(s)	50, 625
PceI	AGGCCT	1 cut(s)	886
PfeI	GAWTC	2 cut(s)	272, 607
PkrI	GCNGC	3 cut(s)	358, 492, 737
PleI	GAGTC	2 cut(s)	662, 711
PpsI	GAGTC	2 cut(s)	662, 711
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	40, 134
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	530, 616
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	282, 288, 564, 819
SatI	GCNGC	3 cut(s)	357, 491, 736
Sau3AI	GATC	3 cut(s)	223, 530, 616
Sau96I	GGNCC	2 cut(s)	40, 134
SchI	GAGTC	2 cut(s)	662, 712
SfaNI	GCATC	2 cut(s)	217, 895
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	5 cut(s)	236, 383, 405, 660, 831
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	2 cut(s)	77, 491
SspMI	CTAG	3 cut(s)	138, 620, 860
StuI	AGGCCT	1 cut(s)	886
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	713
TaqI	TCGA	1 cut(s)	275
TasI	AATT	5 cut(s)	236, 383, 405, 660, 831
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	2 cut(s)	272, 607
Tru1I	TTAA	4 cut(s)	282, 288, 564, 819
Tru9I	TTAA	4 cut(s)	282, 288, 564, 819
TseFI	GTSAC	2 cut(s)	50, 625
TseI	GCWGC	2 cut(s)	356, 735
Tsp45I	GTSAC	2 cut(s)	50, 625
TspDTI	ATGAA	4 cut(s)	387, 417, 546, 830
TspGWI	ACGGA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	40
XmiI	GTMKAC	2 cut(s)	73, 232
XspI	CTAG	3 cut(s)	138, 620, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.