FvH4_2g27840

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008003
Physical Location & Seq
Forward (+)
21995903 .. 21998828
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27840.t2

Sequence Viewer

Length: 1020 bp
ATGGATATCCATCAAATCCAGTCACCACCATCCAAACGCAACGCCCCTCCTTCCCTCTTCTTCCAGTGCTCAGACCTCATCCTCCCATGGCTAACCCCACAAGAGCTAGCCATAGCATCTCTGACCTGCACCACCCTCCGCAACCTCTCCAACTCCATCACTCTCCGCCGCGCCTCCGACGCTTCCAGATCCCTCGAGCCCCTTCCCATCCCCTTCCGCAACTCCCTCGACCAACACCCTTATGCCTTCTTCCTCTATCAACCCACATCTTCACCTTCTTCTAATCTTGTACGACAGTCCTGGGGTTCTACTCACCAGAATCCAGACACGGAGACAAGAACTGAAACGTCGTCGTTATGTTTTGTCGACGAAACTGGAAACTGCGCGTCTTCTGGGTGTGGATGTGAGGAGACATGTGAGGATGGTTGTCCGTGTGTTGTTGGCTTTGGTGGCTTCGACGGCGTCGTTTTCGAGTGTGGGCCCAGTTGTGGATGCGGGTTAAGTTGTGGGAATCGGGTGACTCAGAGAGGGATTCGGGTTAAGTTGAAGATTGTGAGGGAGAGTAGAAAAGGGTGGGGTTTGTTTGCCGACCAATTCATCCCAAAGGGTCGGTTTGTGTGTGAGTATGCAGGTGAACTATTGACGACCAAGGAATCAAGACTGCGGCAACAAATGTATGATGAACTTTCATCTGGTGGTCACTTCTCCCCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCCAAAAAGGCATGTCTGAGACTCAATATTGATGCCACAAGAATTGGAAACGTCTCAAGGTTCATCAATCATTCTTGCGACGGAGGTAATCTATCCACAGCTCTTGTTAGAAGCTCAGGCGCGTTGCTTCCACGTCTTTGCTTTTTTGCTTCAGATGACATAACAAAAGATGAAGAGCTTACGTTTAGCTATGGTGAAACTAGGCTAAACTCCAAGGGTTTGCAGTGCTTTTGTGGAAGCTCTTGCTGTGTAGGTATATTACCCTCAGAGCAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Pre-SET SET

Protein Analysis

340

Amino Acids

37.08

Weight (kDa)

6.59

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 191 - 312 1e-21 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 620
Acc36I ACCTGC 2 cut(s) 134, 620
AccI GTMKAC 1 cut(s) 366
AccII CGCG 3 cut(s) 171, 386, 863
AciI CCGC 6 cut(s) 139, 166, 169, 217, 495, 664
AclWI GGATC 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 1 cut(s) 547
AjiI CACGTC 1 cut(s) 875
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 6 cut(s) 106, 842, 855, 919, 930, 981
AluI AGCT 6 cut(s) 106, 842, 855, 919, 930, 981
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 4 cut(s) 326, 404, 754, 799
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 479
ApaI GGGCCC 1 cut(s) 483
AspLEI GCGC 3 cut(s) 173, 386, 863
AspS9I GGNCC 2 cut(s) 479, 480
AsuHPI GGTGA 6 cut(s) 15, 264, 305, 529, 644, 947
AsuNHI GCTAGC 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 483
BanII GRGCYC 2 cut(s) 201, 483
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 6 cut(s) 18, 37, 164, 215, 416, 748
BceAI ACGGC 1 cut(s) 475
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 4 cut(s) 326, 404, 754, 799
BfaI CTAG 2 cut(s) 107, 942
BfuAI ACCTGC 2 cut(s) 134, 620
BisI GCNGC 2 cut(s) 169, 665
BlsI GCNGC 2 cut(s) 170, 666
Bme1390I CCNGG 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 479, 480
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 4 cut(s) 125, 482, 742, 763
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 856
BpuEI CTTGAG 1 cut(s) 781
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 86, 300, 648, 954
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 4 cut(s) 19, 64, 379, 483
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 4 cut(s) 86, 300, 648, 954
BseGI GGATG 8 cut(s) 29, 78, 207, 407, 427, 497, 597, 740
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 5 cut(s) 84, 536, 749, 870, 1020
BseNI ACTGG 4 cut(s) 19, 64, 379, 483
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 483
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 3 cut(s) 171, 386, 863
BshFI GGCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 4 cut(s) 326, 404, 754, 799
BsmBI CGTCTC 1 cut(s) 799
BsnI GGCC 1 cut(s) 481
BsoBI CYCGRG 1 cut(s) 194
Bsp120I GGGCCC 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 71, 201, 483
Bsp143I GATC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 6 cut(s) 139, 166, 169, 217, 495, 664
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 5 cut(s) 83, 535, 750, 869, 1019
BspFNI CGCG 3 cut(s) 171, 386, 863
BspLI GGNNCC 1 cut(s) 481
BspMI ACCTGC 2 cut(s) 134, 620
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 183
BspQI GCTCTTC 1 cut(s) 909
BsrI ACTGG 4 cut(s) 19, 64, 379, 483
BssECI CCNNGG 4 cut(s) 86, 300, 648, 954
BssMI GATC 1 cut(s) 188
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 3 cut(s) 86, 648, 954
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 2 cut(s) 62, 909
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 6 cut(s) 70, 522, 758, 856, 1006, 1017
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 8 cut(s) 29, 78, 207, 407, 427, 497, 597, 740
BstFNI CGCG 3 cut(s) 171, 386, 863
BstHHI GCGC 3 cut(s) 173, 386, 863
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 4 cut(s) 326, 404, 754, 799
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 3 cut(s) 179, 450, 459
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 2 cut(s) 417, 756
BstSCI CCNGG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 3 cut(s) 171, 386, 863
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 86
BtrI CACGTC 1 cut(s) 875
BtsCI GGATG 8 cut(s) 29, 78, 207, 407, 427, 497, 597, 740
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 2 cut(s) 71, 971
BveI ACCTGC 2 cut(s) 134, 620
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 3 cut(s) 173, 386, 863
Cfr13I GGNCC 2 cut(s) 479, 480
CseI GACGC 3 cut(s) 188, 375, 451
Csp6I GTAC 1 cut(s) 290
CspCI CAANNNNNGTGG 4 cut(s) 766, 801, 826, 861
CviAII CATG 3 cut(s) 87, 414, 753
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 6 cut(s) 70, 522, 758, 856, 1006, 1017
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 62, 909
EarI CTCTTC 2 cut(s) 62, 909
EciI GGCGGA 1 cut(s) 155
Eco130I CCWWGG 3 cut(s) 86, 648, 954
Eco24I GRGCYC 2 cut(s) 201, 483
Eco32I GATATC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 299
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 86, 648, 954
EcoT38I GRGCYC 2 cut(s) 201, 483
ErhI CCWWGG 3 cut(s) 86, 648, 954
Esp3I CGTCTC 1 cut(s) 799
FaeI CATG 3 cut(s) 90, 417, 756
FatI CATG 3 cut(s) 86, 413, 752
FauI CCCGC 1 cut(s) 488
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 169, 665
FokI GGATG 8 cut(s) 16, 65, 194, 414, 434, 504, 584, 727
FriOI GRGCYC 2 cut(s) 201, 483
Fsp4HI GCNGC 2 cut(s) 169, 665
FspBI CTAG 2 cut(s) 107, 942
GlaI GCGC 3 cut(s) 172, 385, 862
GluI GCNGC 2 cut(s) 169, 665
HaeIII GGCC 1 cut(s) 481
HgaI GACGC 3 cut(s) 188, 375, 451
HhaI GCGC 3 cut(s) 173, 386, 863
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 3 cut(s) 90, 417, 756
Hin6I GCGC 3 cut(s) 171, 384, 861
HinP1I GCGC 3 cut(s) 171, 384, 861
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 6 cut(s) 319, 511, 520, 532, 653, 762
HphI GGTGA 6 cut(s) 15, 264, 305, 529, 644, 947
Hpy166II GTNNAC 2 cut(s) 367, 635
Hpy188I TCNGA 7 cut(s) 73, 123, 178, 525, 759, 895, 1009
Hpy188III TCNNGA 3 cut(s) 186, 323, 657
Hpy8I GTNNAC 2 cut(s) 367, 635
Hpy99I CGWCG 7 cut(s) 182, 352, 355, 371, 461, 467, 824
HpyAV CCTTC 5 cut(s) 60, 212, 223, 256, 285
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 4 cut(s) 347, 792, 874, 923
HpyCH4V TGCA 3 cut(s) 129, 629, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 450, 459
HpyF3I CTNAG 6 cut(s) 70, 522, 758, 856, 1006, 1017
HpySE526I ACGT 4 cut(s) 347, 792, 874, 923
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 3 cut(s) 90, 417, 756
HspAI GCGC 3 cut(s) 171, 384, 861
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 1 cut(s) 730
LweI GCATC 4 cut(s) 125, 482, 742, 763
MaeI CTAG 2 cut(s) 107, 942
MaeII ACGT 4 cut(s) 347, 792, 874, 923
MaeIII GTNAC 3 cut(s) 21, 517, 698
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 9 cut(s) 49, 52, 241, 261, 270, 381, 559, 728, 926
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 3 cut(s) 71, 201, 483
MluCI AATT 2 cut(s) 593, 783
MlyI GAGTC 2 cut(s) 514, 756
MmeI TCCRAC 2 cut(s) 174, 201
MseI TTAA 2 cut(s) 500, 540
MslI CAYNNNNRTG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 3 cut(s) 171, 386, 863
MwoI GCNNNNNNNGC 3 cut(s) 179, 450, 459
NcoI CCATGG 1 cut(s) 86
NdeII GATC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 3 cut(s) 90, 417, 756
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 3 cut(s) 21, 517, 698
NspI RCATGY 2 cut(s) 417, 756
PaeR7I CTCGAG 1 cut(s) 194
PaqCI CACCTGC 1 cut(s) 620
PciI ACATGT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 909
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PfeI GAWTC 4 cut(s) 319, 511, 532, 653
PflFI GACNNNGTC 1 cut(s) 461
PkrI GCNGC 2 cut(s) 170, 666
PleI GAGTC 2 cut(s) 514, 756
PpsI GAGTC 2 cut(s) 514, 756
PscI ACATGT 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 481
PspOMI GGGCCC 1 cut(s) 479
PspPI GGNCC 2 cut(s) 479, 480
PspXI VCTCGAGB 1 cut(s) 194
PsuI RGATCY 1 cut(s) 188
PsyI GACNNNGTC 1 cut(s) 461
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 240
SalI GTCGAC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 500, 540
SatI GCNGC 2 cut(s) 169, 665
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 2 cut(s) 479, 480
SchI GAGTC 2 cut(s) 514, 756
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 3 cut(s) 71, 201, 483
SfaNI GCATC 4 cut(s) 125, 482, 742, 763
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 194, 796
SmoI CTYRAG 2 cut(s) 194, 796
Sse9I AATT 2 cut(s) 593, 783
SsiI CCGC 6 cut(s) 139, 166, 169, 217, 495, 664
SspI AATATT 1 cut(s) 769
SspMI CTAG 2 cut(s) 107, 942
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 3 cut(s) 86, 648, 954
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 4 cut(s) 350, 795, 877, 926
TaqI TCGA 5 cut(s) 195, 228, 366, 456, 471
TasI AATT 2 cut(s) 593, 783
TauI GCSGC 2 cut(s) 171, 667
TfiI GAWTC 4 cut(s) 319, 511, 532, 653
Tru1I TTAA 2 cut(s) 500, 540
Tru9I TTAA 2 cut(s) 500, 540
TscAI CASTG 2 cut(s) 71, 971
TseFI GTSAC 3 cut(s) 21, 517, 698
Tsp45I GTSAC 3 cut(s) 21, 517, 698
TspDTI ATGAA 5 cut(s) 586, 678, 696, 793, 927
TspGWI ACGGA 3 cut(s) 344, 420, 837
TspRI CASTG 2 cut(s) 71, 971
Tth111I GACNNNGTC 1 cut(s) 461
XceI RCATGY 2 cut(s) 417, 756
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 2 cut(s) 107, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.