Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017747.1

Orthogroup ID

OG0008003

Physical Location & Seq

Genomic Coordinates Forward (+)

39006 .. 43806

Gene Structure 4801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017747.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgcagtcgccaccaacaacaccatcgaaacgcaataccagtccttcccttttcttccggtgcttagacctcgtccttccatggctaaccccacaagagctggccatggcatctctgacctgcaccaccctccgcaacctctccaagtccatcactctccgccgcgcctccgacgcttccagatccctcgagccccatgccatcccattccataactcactcgatcaacacccttatgcctacttcatctacgccccttcctctctaacccaatcatcttcttcttcttcttcttcactgcttcgccaaccgtggggttccagtcaccacgagtcagactcggacaccagaactgaaacgtcgtcgttgcgttttgttgacgaatcgggaaactgtgcgtcgtctgggtgtgaatgtgaagagacatgtgaggatgggaaagaggggtgtccgtgtgttgtcggctttgctggcttcgacggcgtcgttttcgagtgtggacccagttgtggatgccggttaagttgtgggaatcggttgactcagaccgggattcaggttaagttgaagattgtgagggacagaagaaaagggtggagtttgtttgccgaccagttcatccccaagggtcggtttgtgtgcgagtatgcaggtgaactattgacaacaaaggaatcaagactgcggcaagaaatttatgatgaactttcgtcgggtggtcatttctcccctgctcttttggttgtgagggagcatcttccatccaaaaaggcatgtctgagactcaatattgatgccacaagaatcggaaatgtctcaaggttcatcaaccattcttgcgacggaggtaatttgtccacagctcttgttagaagctcaggggctttgcttccacgtctttgcttttttgcttcagatgacataaaagtggatgaagagcttacatttagctatggtgaaactaggctgaactccaagggtgtcattatccctaaactggttccccgtgaagcgaacaaagcagctcacatagcagcttcgcttgcctatcaatcagtgggtcttcgtagatgggctgatcagccaccaccttcccttgcaatagtgctccaaaacgttggcctcccttgcccccatgttgaggagatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Pre-SET SET

Protein Analysis

383

Amino Acids

41.96

Weight (kDa)

7.49

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03750 AT3G03750
fragaria_vesca	FvH4_2g27840 FvH4_2g27840 FvH4_2g27840 FvH4_3g25420
malus_domestica	MD12G1009500.v1.1
prunus_persica	Prupe.7G011400_v2.0.a1 Prupe.7G011400_v2.0.a1
pyrus_communis	pycom09g15010 pycom12g00730
rosa_chinensis	RchiOBHm_Chr5g0046691
rosa_laevigata	RLG00000034432
rosa_multiflora	Rmu_sc0000292.1_g000019 Rmu_sc0017747.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034670
rosa_rugosa	Rorug05G0230800 Rorug05G0230900 Rorug05G0231000
rosa_samantha	Rh5AG310800 Rh5BG319200 Rh5CG345100 Rh5DG329800
rosa_wichuraiana	Rw5G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
Acc36I	ACCTGC	2 cut(s)	128, 641
AccII	CGCG	1 cut(s)	165
AciI	CCGC	4 cut(s)	133, 160, 163, 685
AclI	AACGTT	1 cut(s)	1116
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	897
AcyI	GRCGYC	1 cut(s)	483
AfiI	CCNNNNNNNGG	5 cut(s)	313, 509, 630, 997, 1141
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	896
AluBI	AGCT	7 cut(s)	100, 863, 876, 940, 951, 1025, 1037
AluI	AGCT	7 cut(s)	100, 863, 876, 940, 951, 1025, 1037
Alw21I	GWGCWC	1 cut(s)	1110
Alw26I	GTCTC	3 cut(s)	416, 775, 820
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	102, 1120
ApeKI	GCWGC	2 cut(s)	1022, 1034
ApoI	RAATTY	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	3 cut(s)	317, 665, 968
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	1055
Bbv12I	GWGCWC	1 cut(s)	1110
BbvI	GCAGC	2 cut(s)	1034, 1046
BccI	CCATC	6 cut(s)	31, 158, 209, 428, 769, 1065
BceAI	ACGGC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BclI	TGATCA	1 cut(s)	1078
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	3 cut(s)	416, 775, 820
BfaI	CTAG	1 cut(s)	963
BfuAI	ACCTGC	2 cut(s)	128, 641
BisI	GCNGC	4 cut(s)	163, 686, 1023, 1035
BlsI	GCNGC	4 cut(s)	164, 687, 1024, 1036
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	319, 502, 1002
BmrFI	CCNGG	1 cut(s)	550
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	4 cut(s)	119, 503, 763, 784
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	1055
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu10I	CCTNAGC	1 cut(s)	877
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	550
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	5 cut(s)	80, 105, 311, 624, 975
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	5 cut(s)	313, 509, 630, 997, 1141
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	5 cut(s)	39, 321, 504, 613, 1002
BseDI	CCNNGG	5 cut(s)	80, 105, 311, 624, 975
BseGI	GGATG	6 cut(s)	201, 439, 518, 618, 761, 937
BseLI	CCNNNNNNNGG	5 cut(s)	313, 509, 630, 997, 1141
BseMII	CTCAG	3 cut(s)	557, 770, 891
BseNI	ACTGG	5 cut(s)	39, 321, 504, 613, 1002
BseXI	GCAGC	2 cut(s)	1034, 1046
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	104, 1122
BsiHKAI	GWGCWC	1 cut(s)	1110
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	58, 517, 549
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	5 cut(s)	313, 509, 630, 997, 1141
BsmAI	GTCTC	3 cut(s)	416, 775, 820
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	104, 1122
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	195, 1110
Bsp143I	GATC	3 cut(s)	182, 223, 1078
Bsp19I	CCATGG	2 cut(s)	80, 105
BspACI	CCGC	4 cut(s)	133, 160, 163, 685
BspANI	GGCC	2 cut(s)	104, 1122
BspCNI	CTCAG	3 cut(s)	556, 771, 890
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	319, 502, 1002
BspMI	ACCTGC	2 cut(s)	128, 641
BspPI	GGATC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	516
BsrI	ACTGG	5 cut(s)	39, 321, 504, 613, 1002
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	5 cut(s)	80, 105, 311, 624, 975
BssMI	GATC	3 cut(s)	182, 223, 1078
BssNI	GRCGYC	1 cut(s)	483
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	4 cut(s)	80, 105, 624, 975
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	312, 395
Bst6I	CTCTTC	2 cut(s)	414, 930
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	102, 472, 1044
BstDEI	CTNAG	4 cut(s)	64, 543, 779, 877
BstDSI	CCRYGG	3 cut(s)	80, 105, 311
BstF5I	GGATG	6 cut(s)	201, 439, 518, 618, 761, 937
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	185, 226, 1081
BstMAI	GTCTC	3 cut(s)	416, 775, 820
BstMBI	GATC	3 cut(s)	182, 223, 1078
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 471, 480, 1019, 1031, 1043, 1128
BstNSI	RCATGY	2 cut(s)	429, 777
BstSCI	CCNGG	1 cut(s)	548
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	1034, 1046
BstV2I	GAAGAC	1 cut(s)	1055
BstX2I	RGATCY	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	1118
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	104, 1122
BtgI	CCRYGG	3 cut(s)	80, 105, 311
BtrI	CACGTC	1 cut(s)	896
BtsCI	GGATG	6 cut(s)	201, 439, 518, 618, 761, 937
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	296, 1062
BveI	ACCTGC	2 cut(s)	128, 641
Cac8I	GCNNGC	3 cut(s)	102, 472, 1044
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	500
CseI	GACGC	3 cut(s)	182, 387, 472
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	6 cut(s)	81, 106, 197, 426, 774, 1136
DdeI	CTNAG	4 cut(s)	64, 543, 779, 877
DpnI	GATC	3 cut(s)	184, 225, 1080
DpnII	GATC	3 cut(s)	182, 223, 1078
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	414, 930
EarI	CTCTTC	2 cut(s)	414, 930
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	4 cut(s)	80, 105, 624, 975
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	188
EcoT14I	CCWWGG	4 cut(s)	80, 105, 624, 975
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	4 cut(s)	80, 105, 624, 975
FaeI	CATG	6 cut(s)	84, 109, 200, 429, 777, 1139
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	6 cut(s)	80, 105, 196, 425, 773, 1135
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	4 cut(s)	163, 686, 1023, 1035
FokI	GGATG	6 cut(s)	188, 446, 525, 605, 748, 944
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	163, 686, 1023, 1035
FspBI	CTAG	1 cut(s)	963
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	163, 686, 1023, 1035
HaeIII	GGCC	2 cut(s)	104, 1122
HapII	CCGG	3 cut(s)	58, 517, 549
HgaI	GACGC	3 cut(s)	182, 387, 472
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	6 cut(s)	84, 109, 200, 429, 777, 1139
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	2 cut(s)	379, 540
HindII	GTYRAC	2 cut(s)	379, 540
HinfI	GANTC	9 cut(s)	332, 338, 383, 532, 541, 553, 674, 783, 804
HpaII	CCGG	3 cut(s)	58, 517, 549
HphI	GGTGA	3 cut(s)	317, 665, 968
Hpy166II	GTNNAC	5 cut(s)	379, 500, 540, 656, 858
Hpy188I	TCNGA	8 cut(s)	117, 172, 337, 343, 546, 780, 809, 916
Hpy188III	TCNNGA	3 cut(s)	180, 387, 678
Hpy8I	GTNNAC	5 cut(s)	379, 500, 540, 656, 858
Hpy99I	CGWCG	8 cut(s)	176, 364, 367, 403, 482, 488, 715, 845
HpyAV	CCTTC	4 cut(s)	54, 86, 267, 1101
HpyCH4III	ACNGT	2 cut(s)	312, 395
HpyCH4IV	ACGT	3 cut(s)	359, 895, 1116
HpyCH4V	TGCA	4 cut(s)	4, 123, 650, 1100
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 471, 480, 1019, 1031, 1043, 1128
HpyF3I	CTNAG	4 cut(s)	64, 543, 779, 877
HpySE526I	ACGT	3 cut(s)	359, 895, 1116
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	6 cut(s)	84, 109, 200, 429, 777, 1139
HspAI	GCGC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	3 cut(s)	182, 223, 1078
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	2 cut(s)	751, 1113
Lsp1109I	GCAGC	2 cut(s)	1034, 1046
LweI	GCATC	4 cut(s)	119, 503, 763, 784
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	3 cut(s)	359, 895, 1116
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	3 cut(s)	184, 225, 1080
MboI	GATC	3 cut(s)	182, 223, 1078
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	195, 1110
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	693, 850
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	4 cut(s)	332, 341, 535, 777
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	2 cut(s)	521, 561
MslI	CAYNNNNRTG	2 cut(s)	234, 926
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	3 cut(s)	58, 517, 549
MspR9I	CCNGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	7 cut(s)	173, 471, 480, 1019, 1031, 1043, 1128
NciI	CCSGG	1 cut(s)	550
NcoI	CCATGG	2 cut(s)	80, 105
NdeII	GATC	3 cut(s)	182, 223, 1078
NlaIII	CATG	6 cut(s)	84, 109, 200, 429, 777, 1139
NlaIV	GGNNCC	3 cut(s)	319, 502, 1002
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	2 cut(s)	429, 777
PaeR7I	CTCGAG	1 cut(s)	188
PaqCI	CACCTGC	1 cut(s)	641
PciI	ACATGT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PfeI	GAWTC	5 cut(s)	383, 532, 553, 674, 804
PflFI	GACNNNGTC	2 cut(s)	71, 482
PkrI	GCNGC	4 cut(s)	164, 687, 1024, 1036
PleI	GAGTC	4 cut(s)	332, 340, 535, 777
PpsI	GAGTC	4 cut(s)	332, 340, 535, 777
PscI	ACATGT	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	1116
PspN4I	GGNNCC	3 cut(s)	319, 502, 1002
PspPI	GGNCC	1 cut(s)	500
PspXI	VCTCGAGB	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	2 cut(s)	71, 482
RseI	CAYNNNNRTG	2 cut(s)	234, 926
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	2 cut(s)	521, 561
SatI	GCNGC	4 cut(s)	163, 686, 1023, 1035
Sau3AI	GATC	3 cut(s)	182, 223, 1078
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	4 cut(s)	332, 341, 535, 777
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	2 cut(s)	195, 1110
SfaNI	GCATC	4 cut(s)	119, 503, 763, 784
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	234, 926
SmlI	CTYRAG	2 cut(s)	188, 817
SmoI	CTYRAG	2 cut(s)	188, 817
Sse9I	AATT	2 cut(s)	693, 850
SsiI	CCGC	4 cut(s)	133, 160, 163, 685
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	1 cut(s)	963
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	4 cut(s)	80, 105, 624, 975
TaaI	ACNGT	2 cut(s)	312, 395
TaiI	ACGT	3 cut(s)	362, 898, 1119
TaqI	TCGA	5 cut(s)	26, 189, 222, 477, 492
TasI	AATT	2 cut(s)	693, 850
TauI	GCSGC	2 cut(s)	165, 688
TfiI	GAWTC	5 cut(s)	383, 532, 553, 674, 804
Tru1I	TTAA	2 cut(s)	521, 561
Tru9I	TTAA	2 cut(s)	521, 561
TscAI	CASTG	2 cut(s)	303, 1062
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	1022, 1034
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	5 cut(s)	235, 607, 717, 814, 948
TspGWI	ACGGA	2 cut(s)	441, 858
TspRI	CASTG	2 cut(s)	303, 1062
Tth111I	GACNNNGTC	2 cut(s)	71, 482
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	693
XceI	RCATGY	2 cut(s)	429, 777
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.