Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Forward (+)

1329571 .. 1331642

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATCTTCACTCACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGTACCAAAATTGCCTCAGAAGGCTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCTGATCTTCAAGGTGATGAGGATAACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGTTCTGTGCCAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTCTCAGGCTATTCTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTCATCCGTAAAGTCAAGATCCTCAAGGCCCCTAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTACTCAGCAGAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGATGGCTGTTGAGGAACCTACTGAAATCATCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

262

Amino Acids

29.85

Weight (kDa)

9.78

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	16 - 221	1.2e-81	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	1 cut(s)	493
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	5 cut(s)	59, 244, 484, 555, 643
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	3 cut(s)	285, 591, 605
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	108, 184, 221
AjiI	CACGTC	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	273, 444
AluBI	AGCT	5 cut(s)	263, 527, 575, 682, 785
AluI	AGCT	5 cut(s)	263, 527, 575, 682, 785
Alw26I	GTCTC	2 cut(s)	260, 427
AlwI	GGATC	5 cut(s)	59, 244, 484, 555, 643
AoxI	GGCC	3 cut(s)	3, 657, 737
ApoI	RAATTY	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	629
Asp718I	GGTACC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	236, 307, 418
BanI	GGYRCC	1 cut(s)	158
BccI	CCATC	1 cut(s)	745
BciT130I	CCWGG	2 cut(s)	275, 446
BcoDI	GTCTC	2 cut(s)	260, 427
BfrI	CTTAAG	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	275, 446
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	4 cut(s)	102, 160, 660, 765
BmrFI	CCNGG	2 cut(s)	275, 446
BmsI	GCATC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	274, 673
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	739
BseBI	CCWGG	2 cut(s)	275, 446
BseDI	CCNNGG	2 cut(s)	274, 673
BseGI	GGATG	2 cut(s)	633, 694
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	6 cut(s)	167, 186, 271, 418, 617, 720
BshFI	GGCC	3 cut(s)	5, 659, 739
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	260, 427
BsmBI	CGTCTC	2 cut(s)	260, 427
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	5, 659, 739
Bsp143I	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
BspACI	CCGC	1 cut(s)	493
BspANI	GGCC	3 cut(s)	5, 659, 739
BspCNI	CTCAG	6 cut(s)	166, 185, 270, 417, 616, 719
BspLI	GGNNCC	4 cut(s)	102, 160, 660, 765
BspPI	GGATC	5 cut(s)	59, 244, 484, 555, 643
BspT107I	GGYRCC	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	739
BssAI	RCCGGY	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	274, 673
BssMI	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	2 cut(s)	275, 446
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	624
BstAFI	CTTAAG	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	680, 741
BstDEI	CTNAG	9 cut(s)	30, 153, 172, 257, 329, 404, 558, 603, 706
BstF5I	GGATG	2 cut(s)	633, 694
BstKTI	GATC	6 cut(s)	67, 217, 252, 492, 550, 651
BstMAI	GTCTC	2 cut(s)	260, 427
BstMBI	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
BstNI	CCWGG	2 cut(s)	275, 446
BstSCI	CCNGG	2 cut(s)	273, 444
BstX2I	RGATCY	4 cut(s)	249, 489, 547, 648
BstYI	RGATCY	4 cut(s)	249, 489, 547, 648
BsuRI	GGCC	3 cut(s)	5, 659, 739
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	633, 694
Cac8I	GCNNGC	2 cut(s)	680, 741
Cfr10I	RCCGGY	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	658
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	5 cut(s)	307, 371, 514, 534, 685
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	9 cut(s)	30, 153, 172, 257, 329, 404, 558, 603, 706
DpnI	GATC	6 cut(s)	66, 216, 251, 491, 549, 650
DpnII	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	673
Eco57I	CTGAAG	3 cut(s)	285, 591, 605
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	273, 444
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
Esp3I	CGTCTC	2 cut(s)	260, 427
FaeI	CATG	5 cut(s)	310, 374, 517, 537, 688
FaiI	YATR	6 cut(s)	90, 308, 372, 515, 535, 686
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	5 cut(s)	306, 370, 513, 533, 684
FblI	GTMKAC	1 cut(s)	732
FokI	GGATG	2 cut(s)	620, 701
HaeIII	GGCC	3 cut(s)	5, 659, 739
HapII	CCGG	1 cut(s)	740
Hin1II	CATG	5 cut(s)	310, 374, 517, 537, 688
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	3 cut(s)	236, 307, 418
Hpy166II	GTNNAC	2 cut(s)	694, 733
Hpy188I	TCNGA	5 cut(s)	175, 260, 489, 624, 782
Hpy188III	TCNNGA	5 cut(s)	10, 147, 451, 569, 646
Hpy8I	GTNNAC	2 cut(s)	694, 733
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	34, 49, 114, 170, 433, 589
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	285, 436
HpyF3I	CTNAG	9 cut(s)	30, 153, 172, 257, 329, 404, 558, 603, 706
HpySE526I	ACGT	2 cut(s)	285, 436
Hsp92II	CATG	5 cut(s)	310, 374, 517, 537, 688
KpnI	GGTACC	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Kzo9I	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
LmnI	GCTCC	2 cut(s)	106, 782
LweI	GCATC	1 cut(s)	618
MabI	ACCWGGT	1 cut(s)	444
MaeII	ACGT	2 cut(s)	285, 436
MaeIII	GTNAC	2 cut(s)	395, 536
MalI	GATC	6 cut(s)	66, 216, 251, 491, 549, 650
MboI	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
MboII	GAAGA	8 cut(s)	64, 103, 209, 259, 278, 511, 611, 725
MflI	RGATCY	4 cut(s)	249, 489, 547, 648
MluCI	AATT	3 cut(s)	165, 296, 665
MmeI	TCCRAC	1 cut(s)	109
MroNI	GCCGGC	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	6 cut(s)	96, 342, 381, 543, 726, 787
MslI	CAYNNNNRTG	2 cut(s)	123, 375
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	2 cut(s)	275, 446
MvaI	CCWGG	2 cut(s)	275, 446
NaeI	GCCGGC	1 cut(s)	741
NdeII	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
NgoMIV	GCCGGC	1 cut(s)	739
NlaIII	CATG	5 cut(s)	310, 374, 517, 537, 688
NlaIV	GGNNCC	4 cut(s)	102, 160, 660, 765
NmuCI	GTSAC	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	273, 444
PspGI	CCWGG	2 cut(s)	273, 444
PspN4I	GGNNCC	4 cut(s)	102, 160, 660, 765
PspPI	GGNCC	1 cut(s)	658
PsrI	GAACNNNNNNTAC	2 cut(s)	142, 174
PsuI	RGATCY	4 cut(s)	249, 489, 547, 648
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	2 cut(s)	123, 375
SaqAI	TTAA	6 cut(s)	96, 342, 381, 543, 726, 787
Sau3AI	GATC	6 cut(s)	64, 214, 249, 489, 547, 648
Sau96I	GGNCC	1 cut(s)	658
ScrFI	CCNGG	2 cut(s)	275, 446
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	618
SmiMI	CAYNNNNRTG	2 cut(s)	123, 375
SmlI	CTYRAG	2 cut(s)	542, 653
SmoI	CTYRAG	2 cut(s)	542, 653
Sse9I	AATT	3 cut(s)	165, 296, 665
SsiI	CCGC	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	273, 444
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	2 cut(s)	288, 439
TaqI	TCGA	1 cut(s)	669
TasI	AATT	3 cut(s)	165, 296, 665
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	6 cut(s)	96, 342, 381, 543, 726, 787
Tru9I	TTAA	6 cut(s)	96, 342, 381, 543, 726, 787
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	553, 622
TspGWI	ACGGA	4 cut(s)	242, 473, 626, 711
Vha464I	CTTAAG	1 cut(s)	542
XapI	RAATTY	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.