Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

12586353 .. 12588664

Gene Structure 2312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGACTTTAAATAATTTTTTTATTACATACGATATTATTTACACCGACATATATACACTTTTTATTTACACCTCCTGTTTAGGGTTTTGTGTTTTACAAAGACAAGGGTTTGCTCTCTCTGCCGCTTTTCCCTTCATCTCTTTGCAGGGACCCCGAGCTCGAGCTCCTCCAGTTCCAGCCATGGCCGTCGGAAAGAACAAGAGAATCTCCAAGTCGAAGAAAGGAGGAAAGAAGAAAGCGGTTGATCCGTTTGCCAAGAAGGATTGGTACGACATCAAGGCCCCAAAACTGTTCAACCACCAGAATGTGGGCAAAACCCTCGTCTCCCGTACTCAGGGTACCAAGATTGCTTCCGAAGGACTCAAACATAGAGTCTTTGAGGTATCACTCGCCGACCTTCAGGGTGATGAGGAACATGCTTACAGAAAGATGCGGTTGAGAGCTGAAGATGTCCAAGGGAAGACTGTTCTTACCAATTTCTGGGGAATGAACTTCACCACTGACAAGCTTAGGTCTTTGGTGCGTAAATGGCAAACTTTGATTGAAGCTCATGTGGATGTGAAGACCACTGACAACTATACCCTAAGGATGTTCTGCATTGGCTTTACCAAGAGACGTCCAAATCAGGTCAAGAGGACCTGCTATGCACAGTCTAGCCAAGTCAGACAGATCCGCCGCAAGATGAGCGAGATCATGATTGCCCAGGCAACATCCAGTGATCTTAAGGGCTTGGTCAGCAAGTTCATTGCAGAGAGCATTGGTAAAGAGATTGAGAAGGCTACAATGAGCATCTATCCGTTGCAAAATGTCTTCATTAGGAAGGTGAAGATCTTGAAGGCACCCAAGTTTGATCTCACCAAGCTCATGGAGGTTTACGGTGGCGAAGACGTCGGTGTGAAGGTTGAGAGGCCTGCCGAAGAAGCAGCGCCTGAGGTGCAGCAAGAGATCGTTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

320

Amino Acids

36.19

Weight (kDa)

9.83

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	619, 891
Acc36I	ACCTGC	1 cut(s)	647
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	338, 838
AccB7I	CCANNNNNTGG	2 cut(s)	307, 480
AciI	CCGC	5 cut(s)	123, 239, 433, 673, 676
AclWI	GGATC	2 cut(s)	239, 664
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	383, 465
AcyI	GRCGYC	2 cut(s)	616, 888
AfaI	GTAC	3 cut(s)	269, 331, 340
AfiI	CCNNNNNNNGG	4 cut(s)	81, 307, 334, 480
AflII	CTTAAG	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	295, 545, 835
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	6 cut(s)	158, 164, 443, 508, 548, 862
AluI	AGCT	6 cut(s)	158, 164, 443, 508, 548, 862
Alw21I	GWGCWC	2 cut(s)	160, 166
Alw26I	GTCTC	2 cut(s)	328, 607
AlwI	GGATC	2 cut(s)	239, 664
AlwNI	CAGNNNCTG	1 cut(s)	929
Ama87I	CYCGRG	2 cut(s)	153, 159
AoxI	GGCC	3 cut(s)	183, 279, 908
ApeKI	GCWGC	2 cut(s)	923, 937
ArsI	GACNNNNNNTTYG	4 cut(s)	306, 338, 357, 389
Asp718I	GGTACC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	3 cut(s)	149, 280, 636
AsuHPI	GGTGA	4 cut(s)	416, 487, 835, 847
AvaI	CYCGRG	2 cut(s)	153, 159
AvaII	GGWCC	2 cut(s)	149, 636
AxyI	CCTNAGG	2 cut(s)	584, 930
BanI	GGYRCC	2 cut(s)	338, 838
BanII	GRGCYC	2 cut(s)	160, 166
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbsI	GAAGAC	4 cut(s)	467, 569, 802, 891
Bbv12I	GWGCWC	2 cut(s)	160, 166
BbvI	GCAGC	2 cut(s)	935, 949
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	328, 607
BfaI	CTAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	929
BfrI	CTTAAG	1 cut(s)	722
BfuAI	ACCTGC	1 cut(s)	647
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	4 cut(s)	123, 676, 924, 938
BlsI	GCNGC	4 cut(s)	124, 677, 925, 939
Bme1390I	CCNGG	1 cut(s)	704
Bme18I	GGWCC	2 cut(s)	149, 636
BmeT110I	CYCGRG	2 cut(s)	153, 159
BmgT120I	GGNCC	3 cut(s)	149, 280, 636
BmiI	GGNNCC	5 cut(s)	150, 151, 282, 340, 840
BmrFI	CCNGG	1 cut(s)	704
BmsI	GCATC	2 cut(s)	420, 798
BpiI	GAAGAC	4 cut(s)	467, 569, 802, 891
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	509
BsaHI	GRCGYC	2 cut(s)	616, 888
BsaJI	CCNNGG	3 cut(s)	180, 454, 702
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 307, 334, 480
Bse1I	ACTGG	2 cut(s)	170, 714
Bse21I	CCTNAGG	2 cut(s)	584, 930
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	3 cut(s)	180, 454, 702
BseGI	GGATG	3 cut(s)	562, 594, 710
BseLI	CCNNNNNNNGG	4 cut(s)	81, 307, 334, 480
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	347, 921
BseNI	ACTGG	2 cut(s)	170, 714
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	935, 949
BsgI	GTGCAG	1 cut(s)	956
BshFI	GGCC	3 cut(s)	185, 281, 910
BshNI	GGYRCC	2 cut(s)	338, 838
BsiHKAI	GWGCWC	2 cut(s)	160, 166
BsiHKCI	CYCGRG	2 cut(s)	153, 159
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	4 cut(s)	81, 307, 334, 480
BsmAI	GTCTC	2 cut(s)	328, 607
BsmBI	CGTCTC	2 cut(s)	328, 607
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	185, 281, 910
BsoBI	CYCGRG	2 cut(s)	153, 159
Bsp1286I	GDGCHC	2 cut(s)	160, 166
Bsp143I	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	5 cut(s)	123, 239, 433, 673, 676
BspANI	GGCC	3 cut(s)	185, 281, 910
BspCNI	CTCAG	2 cut(s)	346, 922
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	5 cut(s)	150, 151, 282, 340, 840
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	239, 664
BspT107I	GGYRCC	2 cut(s)	338, 838
BspTI	CTTAAG	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	2 cut(s)	170, 714
BssECI	CCNNGG	3 cut(s)	180, 454, 702
BssMI	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
BssNI	GRCGYC	2 cut(s)	616, 888
BssT1I	CCWWGG	2 cut(s)	180, 454
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	4 cut(s)	291, 466, 651, 878
BstACI	GRCGYC	2 cut(s)	616, 888
BstAFI	CTTAAG	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	4 cut(s)	333, 509, 584, 930
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	562, 594, 710
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	7 cut(s)	247, 672, 693, 721, 831, 853, 948
BstMAI	GTCTC	2 cut(s)	328, 607
BstMBI	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 529, 684, 735, 920, 934
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	935, 949
BstV2I	GAAGAC	4 cut(s)	467, 569, 802, 891
BstX2I	RGATCY	2 cut(s)	669, 828
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	2 cut(s)	669, 828
Bsu36I	CCTNAGG	2 cut(s)	584, 930
BsuRI	GGCC	3 cut(s)	185, 281, 910
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	562, 594, 710
BtsIMutI	CAGTG	3 cut(s)	498, 567, 721
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	912
CaiI	CAGNNNCTG	1 cut(s)	929
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	3 cut(s)	149, 280, 636
Csp6I	GTAC	3 cut(s)	268, 330, 339
CviAII	CATG	5 cut(s)	181, 416, 551, 694, 865
CviQI	GTAC	3 cut(s)	268, 330, 339
DdeI	CTNAG	4 cut(s)	333, 509, 584, 930
DpnI	GATC	7 cut(s)	246, 671, 692, 720, 830, 852, 947
DpnII	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
DraI	TTTAAA	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	662
Ecl136II	GAGCTC	2 cut(s)	158, 164
Eco130I	CCWWGG	2 cut(s)	180, 454
Eco147I	AGGCCT	1 cut(s)	910
Eco24I	GRGCYC	2 cut(s)	160, 166
Eco47I	GGWCC	2 cut(s)	149, 636
Eco53kI	GAGCTC	2 cut(s)	158, 164
Eco57I	CTGAAG	2 cut(s)	383, 465
Eco81I	CCTNAGG	2 cut(s)	584, 930
Eco88I	CYCGRG	2 cut(s)	153, 159
EcoICRI	GAGCTC	2 cut(s)	158, 164
EcoO109I	RGGNCCY	3 cut(s)	149, 280, 636
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	2 cut(s)	180, 454
EcoT38I	GRGCYC	2 cut(s)	160, 166
ErhI	CCWWGG	2 cut(s)	180, 454
Esp3I	CGTCTC	2 cut(s)	328, 607
FaeI	CATG	5 cut(s)	184, 419, 554, 697, 868
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	180, 415, 550, 693, 864
Fnu4HI	GCNGC	4 cut(s)	123, 676, 924, 938
FokI	GGATG	3 cut(s)	569, 601, 697
FriOI	GRGCYC	2 cut(s)	160, 166
Fsp4HI	GCNGC	4 cut(s)	123, 676, 924, 938
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	4 cut(s)	123, 676, 924, 938
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	3 cut(s)	185, 281, 910
HhaI	GCGC	1 cut(s)	928
Hin1I	GRCGYC	2 cut(s)	616, 888
Hin1II	CATG	5 cut(s)	184, 419, 554, 697, 868
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	204, 360, 372
HphI	GGTGA	4 cut(s)	416, 487, 835, 847
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	3 cut(s)	191, 355, 665
Hpy188III	TCNNGA	3 cut(s)	631, 694, 832
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	2 cut(s)	191, 893
HpyAV	CCTTC	8 cut(s)	142, 253, 350, 407, 769, 814, 829, 892
HpyCH4III	ACNGT	4 cut(s)	291, 466, 651, 878
HpyCH4IV	ACGT	2 cut(s)	616, 888
HpyCH4V	TGCA	6 cut(s)	145, 597, 647, 749, 802, 937
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 529, 684, 735, 920, 934
HpyF3I	CTNAG	4 cut(s)	333, 509, 584, 930
HpySE526I	ACGT	2 cut(s)	616, 888
Hsp92I	GRCGYC	2 cut(s)	616, 888
Hsp92II	CATG	5 cut(s)	184, 419, 554, 697, 868
HspAI	GCGC	1 cut(s)	926
KflI	GGGWCCC	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	2 cut(s)	935, 949
LweI	GCATC	2 cut(s)	420, 798
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	616, 888
MalI	GATC	7 cut(s)	246, 671, 692, 720, 830, 852, 947
MboI	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
MboII	GAAGA	9 cut(s)	229, 244, 458, 472, 574, 802, 838, 896, 929
MflI	RGATCY	2 cut(s)	669, 828
MhlI	GDGCHC	2 cut(s)	160, 166
MluCI	AATT	2 cut(s)	13, 475
MlyI	GAGTC	2 cut(s)	354, 381
MmeI	TCCRAC	1 cut(s)	169
MseI	TTAA	3 cut(s)	8, 723, 958
MslI	CAYNNNNRTG	2 cut(s)	303, 555
MspCI	CTTAAG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	704
MwoI	GCNNNNNNNGC	6 cut(s)	119, 529, 684, 735, 920, 934
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
NlaIII	CATG	5 cut(s)	184, 419, 554, 697, 868
NlaIV	GGNNCC	5 cut(s)	150, 151, 282, 340, 840
NspI	RCATGY	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	159
PagI	TCATGA	1 cut(s)	693
PceI	AGGCCT	1 cut(s)	910
PfeI	GAWTC	1 cut(s)	204
PflMI	CCANNNNNTGG	2 cut(s)	307, 480
PkrI	GCNGC	4 cut(s)	124, 677, 925, 939
PleI	GAGTC	2 cut(s)	354, 380
PpsI	GAGTC	2 cut(s)	354, 380
PpuMI	RGGWCCY	2 cut(s)	149, 636
Psp124BI	GAGCTC	2 cut(s)	160, 166
Psp5II	RGGWCCY	2 cut(s)	149, 636
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	5 cut(s)	150, 151, 282, 340, 840
PspPI	GGNCC	3 cut(s)	149, 280, 636
PspPPI	RGGWCCY	2 cut(s)	149, 636
PspXI	VCTCGAGB	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	929
PsuI	RGATCY	2 cut(s)	669, 828
RsaI	GTAC	3 cut(s)	269, 331, 340
RsaNI	GTAC	3 cut(s)	268, 330, 339
RseI	CAYNNNNRTG	2 cut(s)	303, 555
SacI	GAGCTC	2 cut(s)	160, 166
SaqAI	TTAA	3 cut(s)	8, 723, 958
SatI	GCNGC	4 cut(s)	123, 676, 924, 938
Sau3AI	GATC	7 cut(s)	244, 669, 690, 718, 828, 850, 945
Sau96I	GGNCC	3 cut(s)	149, 280, 636
SchI	GAGTC	2 cut(s)	354, 381
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	2 cut(s)	160, 166
SfaNI	GCATC	2 cut(s)	420, 798
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	149, 636
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	303, 555
SmlI	CTYRAG	2 cut(s)	159, 722
SmoI	CTYRAG	2 cut(s)	159, 722
Sse9I	AATT	2 cut(s)	13, 475
SseBI	AGGCCT	1 cut(s)	910
SsiI	CCGC	5 cut(s)	123, 239, 433, 673, 676
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	2 cut(s)	160, 166
StuI	AGGCCT	1 cut(s)	910
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	2 cut(s)	180, 454
TaaI	ACNGT	4 cut(s)	291, 466, 651, 878
TaiI	ACGT	2 cut(s)	619, 891
TaqI	TCGA	2 cut(s)	160, 215
TasI	AATT	2 cut(s)	13, 475
TauI	GCSGC	2 cut(s)	125, 678
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	3 cut(s)	8, 723, 958
Tru9I	TTAA	3 cut(s)	8, 723, 958
TscAI	CASTG	3 cut(s)	505, 574, 721
TseI	GCWGC	2 cut(s)	923, 937
TspDTI	ATGAA	4 cut(s)	124, 503, 733, 802
TspGWI	ACGGA	2 cut(s)	237, 786
TspRI	CASTG	3 cut(s)	505, 574, 721
Van91I	CCANNNNNTGG	2 cut(s)	307, 480
Vha464I	CTTAAG	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	149, 636
XceI	RCATGY	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	654
ZraI	GACGTC	2 cut(s)	617, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.