FvH4_4g00850

Belongs to the eukaryotic ribosomal protein eS1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004695
Physical Location & Seq
Reverse (-)
748330 .. 750831
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00850.t1

Sequence Viewer

Length: 780 bp
ATGGCCGTCGGGAAGAACAAGAGAATCTCCAAGGGCAAGAAGGGAGGAAAGAAGAAAGCAGCTGATCCTTTTACCAAGAAGGACTGGTATGACATCAAGGCTCCCTCCATCTTTAACATCAAGCAGGTTGGGAAGACTCTCGTCACCCGTACTCAGGGTACCAAGATTGCTTCAGAAGGACTCAAGCACAGAGTCTTTGAGACATCACTTGCTGACCTTCAGGGTGATGAGGAGCATGCCTACAGGAAGATGCGGTTGAGAGCTGAAGATGTCCAAGGAAGGACTGTTCTCACAAACTTCTGGGGAATGAACTTCACCACCGATAAGTTGAGATCATTGGTCCGCAAATGGCAAACCTTGATTGAAGCTCATGTGGATGTGAAAACCACAGACAACTACACACTGAGGATGTTCTGCATTGGATTCACCAAGAGACGTCCTAACCAAGTCAAGAGGACTTGTTATGCTCAATCCAGCCAGATTAGACAGATCCGTCGCAAGATGACTGAAATCATGGTCTCCCAGGCCTCATCTTGTGATCTCAAGGATTTGGTGCGCAAGTTCATTGCTGAGAGCATTGGTAAGGAGATTGAGAAGCAAACTACAAGTATCTATCCTCTACAAAATGTCTTCATCAGGAAGGTCAAGATCTTGAAGGCCCCCAAGTTTGATCTTGGAAAGCTTATGGAGGTGCATGGTGATGAAGATGTTGGCACCAAGGTTGACAGGCCTGCTGAAGAAGCAGTCCCTGAGGCACCTGTTGAGATTGTCGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S3Ae

Protein Analysis

260

Amino Acids

29.52

Weight (kDa)

9.89

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3Ae PF01015 16 - 221 2.1e-81 Ribosomal S3Ae family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
AatII GACGTC 1 cut(s) 439
Acc16I TGCGCA 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 3 cut(s) 158, 713, 754
AciI CCGC 2 cut(s) 253, 343
AclWI GGATC 2 cut(s) 59, 484
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 4 cut(s) 156, 203, 285, 756
AcyI GRCGYC 1 cut(s) 436
AfaI GTAC 2 cut(s) 151, 160
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 365, 655
AjnI CCWGG 1 cut(s) 522
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 5 cut(s) 62, 263, 368, 682, 776
AluI AGCT 5 cut(s) 62, 263, 368, 682, 776
Alw26I GTCTC 3 cut(s) 194, 427, 523
AlwI GGATC 2 cut(s) 59, 484
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 4 cut(s) 3, 525, 657, 728
ApeKI GCWGC 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 2 cut(s) 340, 658
AsuHPI GGTGA 5 cut(s) 136, 236, 307, 418, 710
AvaII GGWCC 1 cut(s) 340
AxyI CCTNAGG 1 cut(s) 750
BanI GGYRCC 3 cut(s) 158, 713, 754
BbsI GAAGAC 2 cut(s) 140, 622
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 524
BcoDI GTCTC 3 cut(s) 194, 427, 523
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 115
BglII AGATCT 1 cut(s) 648
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 524
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 340, 658
BmiI GGNNCC 5 cut(s) 102, 160, 660, 715, 756
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 240
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 140, 622
BpuEI CTTGAG 2 cut(s) 167, 527
BsaHI GRCGYC 1 cut(s) 436
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 4 cut(s) 30, 274, 522, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 89
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 4 cut(s) 30, 274, 522, 717
BseGI GGATG 2 cut(s) 382, 414
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 4 cut(s) 167, 395, 561, 741
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 4 cut(s) 5, 527, 659, 730
BshNI GGYRCC 3 cut(s) 158, 713, 754
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 3 cut(s) 194, 427, 523
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 4 cut(s) 5, 527, 659, 730
Bso31I GGTCTC 1 cut(s) 523
Bsp143I GATC 6 cut(s) 64, 332, 489, 538, 648, 670
BspACI CCGC 2 cut(s) 253, 343
BspANI GGCC 4 cut(s) 5, 527, 659, 730
BspCNI CTCAG 4 cut(s) 166, 396, 562, 742
BspLI GGNNCC 5 cut(s) 102, 160, 660, 715, 756
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 2 cut(s) 59, 484
BspT107I GGYRCC 3 cut(s) 158, 713, 754
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 4 cut(s) 30, 274, 522, 717
BssMI GATC 6 cut(s) 64, 332, 489, 538, 648, 670
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 3 cut(s) 30, 274, 717
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 237, 732
BstDEI CTNAG 5 cut(s) 153, 404, 570, 750, 777
BstF5I GGATG 2 cut(s) 382, 414
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 6 cut(s) 67, 335, 492, 541, 651, 673
BstMAI GTCTC 3 cut(s) 194, 427, 523
BstMBI GATC 6 cut(s) 64, 332, 489, 538, 648, 670
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 239
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 2 cut(s) 140, 622
BstX2I RGATCY 2 cut(s) 489, 648
BstYI RGATCY 2 cut(s) 489, 648
Bsu36I CCTNAGG 1 cut(s) 750
BsuRI GGCC 4 cut(s) 5, 527, 659, 730
BtsCI GGATG 2 cut(s) 382, 414
BtsIMutI CAGTG 1 cut(s) 401
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 237, 732
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 340, 658
Csp6I GTAC 2 cut(s) 150, 159
CviAII CATG 4 cut(s) 236, 371, 514, 695
CviQI GTAC 2 cut(s) 150, 159
DdeI CTNAG 5 cut(s) 153, 404, 570, 750, 777
DpnI GATC 6 cut(s) 66, 334, 491, 540, 650, 672
DpnII GATC 6 cut(s) 64, 332, 489, 538, 648, 670
DrdI GACNNNNNNGTC 1 cut(s) 492
DseDI GACNNNNNNGTC 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 30, 274, 717
Eco147I AGGCCT 2 cut(s) 527, 730
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 4 cut(s) 156, 203, 285, 756
Eco81I CCTNAGG 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 3 cut(s) 30, 274, 717
ErhI CCWWGG 3 cut(s) 30, 274, 717
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 4 cut(s) 239, 374, 517, 698
FaiI YATR 7 cut(s) 90, 237, 372, 465, 515, 686, 696
FaqI GGGAC 1 cut(s) 731
FatI CATG 4 cut(s) 235, 370, 513, 694
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 389, 421
Fsp4HI GCNGC 1 cut(s) 60
FspI TGCGCA 1 cut(s) 557
GlaI GCGC 1 cut(s) 557
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 4 cut(s) 5, 527, 659, 730
HhaI GCGC 1 cut(s) 558
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 4 cut(s) 239, 374, 517, 698
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 5 cut(s) 24, 136, 180, 192, 423
HphI GGTGA 5 cut(s) 136, 236, 307, 418, 710
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 2 cut(s) 175, 773
Hpy188III TCNNGA 5 cut(s) 10, 451, 637, 646, 652
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 2 cut(s) 11, 498
HpyAV CCTTC 7 cut(s) 34, 73, 170, 227, 273, 634, 649
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 2 cut(s) 417, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpyF3I CTNAG 5 cut(s) 153, 404, 570, 750, 777
HpySE526I ACGT 1 cut(s) 436
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 4 cut(s) 239, 374, 517, 698
HspAI GCGC 1 cut(s) 556
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 6 cut(s) 64, 332, 489, 538, 648, 670
LmnI GCTCC 3 cut(s) 106, 232, 773
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 240
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 142
MalI GATC 6 cut(s) 66, 334, 491, 540, 650, 672
MboI GATC 6 cut(s) 64, 332, 489, 538, 648, 670
MboII GAAGA 8 cut(s) 25, 64, 145, 259, 278, 622, 716, 749
MflI RGATCY 2 cut(s) 489, 648
MlyI GAGTC 3 cut(s) 130, 174, 201
MmeI TCCRAC 1 cut(s) 751
MnlI CCTC 9 cut(s) 38, 115, 223, 399, 447, 538, 627, 682, 745
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 2 cut(s) 375, 699
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 1 cut(s) 740
NdeII GATC 6 cut(s) 64, 332, 489, 538, 648, 670
NlaIII CATG 4 cut(s) 239, 374, 517, 698
NlaIV GGNNCC 5 cut(s) 102, 160, 660, 715, 756
NmuCI GTSAC 1 cut(s) 142
NsbI TGCGCA 1 cut(s) 557
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PceI AGGCCT 2 cut(s) 527, 730
PfeI GAWTC 2 cut(s) 24, 423
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 3 cut(s) 130, 174, 200
PpsI GAGTC 3 cut(s) 130, 174, 200
PshAI GACNNNNGTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 5 cut(s) 102, 160, 660, 715, 756
PspPI GGNCC 2 cut(s) 340, 658
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 2 cut(s) 489, 648
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 151, 160
RsaNI GTAC 2 cut(s) 150, 159
RseI CAYNNNNRTG 2 cut(s) 375, 699
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 6 cut(s) 64, 332, 489, 538, 648, 670
Sau96I GGNCC 2 cut(s) 340, 658
SchI GAGTC 3 cut(s) 130, 174, 201
ScrFI CCNGG 1 cut(s) 524
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 375, 699
SmlI CTYRAG 2 cut(s) 182, 542
SmoI CTYRAG 2 cut(s) 182, 542
SphI GCATGC 1 cut(s) 239
SseBI AGGCCT 2 cut(s) 527, 730
SsiI CCGC 2 cut(s) 253, 343
StuI AGGCCT 2 cut(s) 527, 730
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 3 cut(s) 30, 274, 717
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 439
TfiI GAWTC 2 cut(s) 24, 423
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 323, 553, 622, 717
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 340
XceI RCATGY 1 cut(s) 239
ZraI GACGTC 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.