RchiOBHm_Chr4g0387481

Belongs to the eukaryotic ribosomal protein eS1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004695
Physical Location & Seq
Reverse (-)
2673148 .. 2676157
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36080

Sequence Viewer

Length: 780 bp
ATGGCCGTCGGGAAGAACAAGAGAATCTCCAAGGGCAAGAAGGGAGGAAAGAAGAAAGCAGCTGATCCTTTTGCCAAGAAGGACTGGTATGACATCAAGGCTCCTTCAATCTTCAACGTCAAGCAGGTCGGAAAGACTCTTGTCACCCGTACTCAGGGTACCAAGATTGCTTCCGAAGGACTCAAGCACAGAGTCTTTGAGACATCACTTGCTGACCTTCAGGGTGATGAGGAGCATGCTTTCAGAAAGATGCGATTGAGAGCTGAAGATGTTCAAGGAAGGACTGTTCTGACAAACTTCTGGGGAATGAACTTCACAACTGACAAGTTGAGATCTTTGGTGCGCAAATGGCAAACCTTGATTGAAGCTCATGTGGATGTGAAGACCACAGACAACTACACACTGAGGATGTTCTGCATTGGATTCACGAAGAGACGTCCTAATCAAGTCAAGAGGACCTGTTATGCTCAGTCTAGCCAGATTAGACAGATCCGCCGCAAGATGACCGAGATCATGGTTGCCCAGGCAACATCTTGTGATCTCAAGGATTTGGTCCGCAAGTTCATTGCTGAGAGTATTGGTAAAGATATTGAGAAGGCAACTACAAGCATCTATCCTCTACAAAATGTCTTCATCAGGAAGGTCAAGATCTTAAAGGCACCCAAGTTCGATCTTGGAAAGCTTATGGAGGTTCATGGTGATGAAGATGTTGGGACCAAGGTTGAGAGGCCTGCTGAAGAAGCAGTCCCTGAGGCACCAGTTGAGATTGTTGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S3Ae

Protein Analysis

259

Amino Acids

29.4

Weight (kDa)

9.91

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3Ae PF01015 16 - 221 5.2e-81 Ribosomal S3Ae family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 439
Acc16I TGCGCA 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 3 cut(s) 158, 658, 754
AciI CCGC 3 cut(s) 493, 496, 556
AclWI GGATC 2 cut(s) 59, 484
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 3 cut(s) 203, 285, 756
AcyI GRCGYC 1 cut(s) 436
AfaI GTAC 2 cut(s) 151, 160
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 4 cut(s) 108, 115, 275, 365
AjnI CCWGG 1 cut(s) 522
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 5 cut(s) 62, 263, 368, 682, 776
AluI AGCT 5 cut(s) 62, 263, 368, 682, 776
Alw26I GTCTC 2 cut(s) 194, 427
AlwI GGATC 2 cut(s) 59, 484
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 2 cut(s) 3, 728
ApeKI GCWGC 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 3 cut(s) 456, 553, 714
AsuHPI GGTGA 3 cut(s) 136, 236, 710
AvaII GGWCC 3 cut(s) 456, 553, 714
AxyI CCTNAGG 1 cut(s) 750
BanI GGYRCC 3 cut(s) 158, 658, 754
BbsI GAAGAC 2 cut(s) 389, 622
BbvI GCAGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 524
BcoDI GTCTC 2 cut(s) 194, 427
BfaI CTAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 115
BglII AGATCT 2 cut(s) 332, 648
BisI GCNGC 2 cut(s) 60, 496
BlsI GCNGC 2 cut(s) 61, 497
Bme1390I CCNGG 1 cut(s) 524
Bme18I GGWCC 3 cut(s) 456, 553, 714
BmgT120I GGNCC 3 cut(s) 456, 553, 714
BmiI GGNNCC 5 cut(s) 102, 160, 660, 715, 756
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 240, 618
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 389, 622
BpuEI CTTGAG 2 cut(s) 167, 527
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 3 cut(s) 30, 522, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 89, 758
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 3 cut(s) 30, 522, 717
BseGI GGATG 2 cut(s) 382, 414
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 5 cut(s) 167, 395, 482, 561, 741
BseNI ACTGG 2 cut(s) 89, 758
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 2 cut(s) 5, 730
BshNI GGYRCC 3 cut(s) 158, 658, 754
BslFI GGGAC 2 cut(s) 727, 731
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 194, 427
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 2 cut(s) 727, 731
BsnI GGCC 2 cut(s) 5, 730
Bsp143I GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
BspACI CCGC 3 cut(s) 493, 496, 556
BspANI GGCC 2 cut(s) 5, 730
BspCNI CTCAG 5 cut(s) 166, 396, 481, 562, 742
BspLI GGNNCC 5 cut(s) 102, 160, 660, 715, 756
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 2 cut(s) 59, 484
BspT107I GGYRCC 3 cut(s) 158, 658, 754
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 2 cut(s) 89, 758
BssECI CCNNGG 3 cut(s) 30, 522, 717
BssMI GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 2 cut(s) 30, 717
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 425
BstACI GRCGYC 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 237, 732
BstDEI CTNAG 6 cut(s) 153, 404, 468, 570, 750, 777
BstF5I GGATG 2 cut(s) 382, 414
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 7 cut(s) 67, 335, 492, 513, 541, 651, 673
BstMAI GTCTC 2 cut(s) 194, 427
BstMBI GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
BstMWI GCNNNNNNNGC 2 cut(s) 349, 740
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 239
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 2 cut(s) 389, 622
BstX2I RGATCY 3 cut(s) 332, 489, 648
BstYI RGATCY 3 cut(s) 332, 489, 648
Bsu36I CCTNAGG 1 cut(s) 750
BsuRI GGCC 2 cut(s) 5, 730
BtsCI GGATG 2 cut(s) 382, 414
BtsIMutI CAGTG 1 cut(s) 401
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 237, 732
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 3 cut(s) 456, 553, 714
Csp6I GTAC 2 cut(s) 150, 159
CviAII CATG 4 cut(s) 236, 371, 514, 695
CviJI RGCY 9 cut(s) 5, 62, 101, 263, 368, 477, 682, 730, 776
CviKI_1 RGCY 9 cut(s) 5, 62, 101, 263, 368, 477, 682, 730, 776
CviQI GTAC 2 cut(s) 150, 159
DdeI CTNAG 6 cut(s) 153, 404, 468, 570, 750, 777
DpnI GATC 7 cut(s) 66, 334, 491, 512, 540, 650, 672
DpnII GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
EciI GGCGGA 1 cut(s) 482
Eco130I CCWWGG 2 cut(s) 30, 717
Eco147I AGGCCT 1 cut(s) 730
Eco47I GGWCC 3 cut(s) 456, 553, 714
Eco57I CTGAAG 3 cut(s) 203, 285, 756
Eco81I CCTNAGG 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 2 cut(s) 30, 717
ErhI CCWWGG 2 cut(s) 30, 717
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 4 cut(s) 239, 374, 517, 698
FaiI YATR 7 cut(s) 90, 237, 372, 465, 515, 686, 696
FaqI GGGAC 2 cut(s) 727, 731
FatI CATG 4 cut(s) 235, 370, 513, 694
Fnu4HI GCNGC 2 cut(s) 60, 496
FokI GGATG 2 cut(s) 389, 421
Fsp4HI GCNGC 2 cut(s) 60, 496
FspBI CTAG 1 cut(s) 474
FspI TGCGCA 1 cut(s) 344
GlaI GCGC 1 cut(s) 344
GluI GCNGC 2 cut(s) 60, 496
HaeIII GGCC 2 cut(s) 5, 730
HhaI GCGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 4 cut(s) 239, 374, 517, 698
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 5 cut(s) 24, 136, 180, 192, 423
HphI GGTGA 3 cut(s) 136, 236, 710
Hpy188I TCNGA 4 cut(s) 131, 175, 245, 291
Hpy188III TCNNGA 5 cut(s) 10, 427, 451, 637, 646
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 8 cut(s) 34, 73, 114, 170, 227, 273, 589, 634
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 117, 436
HpyCH4V TGCA 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 740
HpyF3I CTNAG 6 cut(s) 153, 404, 468, 570, 750, 777
HpySE526I ACGT 2 cut(s) 117, 436
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 4 cut(s) 239, 374, 517, 698
HspAI GCGC 1 cut(s) 343
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
LmnI GCTCC 3 cut(s) 106, 232, 773
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 240, 618
MaeI CTAG 1 cut(s) 474
MaeII ACGT 2 cut(s) 117, 436
MaeIII GTNAC 1 cut(s) 142
MalI GATC 7 cut(s) 66, 334, 491, 512, 540, 650, 672
MboI GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
MboII GAAGA 9 cut(s) 25, 64, 103, 278, 394, 442, 622, 716, 749
MflI RGATCY 3 cut(s) 332, 489, 648
MlyI GAGTC 3 cut(s) 130, 174, 201
MmeI TCCRAC 2 cut(s) 109, 751
MnlI CCTC 8 cut(s) 38, 223, 399, 447, 627, 682, 720, 745
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 653
MslI CAYNNNNRTG 2 cut(s) 375, 699
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 349, 740
NdeII GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
NlaIII CATG 4 cut(s) 239, 374, 517, 698
NlaIV GGNNCC 5 cut(s) 102, 160, 660, 715, 756
NmuCI GTSAC 1 cut(s) 142
NsbI TGCGCA 1 cut(s) 344
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 24, 423
PkrI GCNGC 2 cut(s) 61, 497
PleI GAGTC 3 cut(s) 130, 174, 200
PpsI GAGTC 3 cut(s) 130, 174, 200
PpuMI RGGWCCY 1 cut(s) 456
PshAI GACNNNNGTC 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 5 cut(s) 102, 160, 660, 715, 756
PspPI GGNCC 3 cut(s) 456, 553, 714
PspPPI RGGWCCY 1 cut(s) 456
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 3 cut(s) 332, 489, 648
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 151, 160
RsaNI GTAC 2 cut(s) 150, 159
RseI CAYNNNNRTG 2 cut(s) 375, 699
SaqAI TTAA 1 cut(s) 653
SatI GCNGC 2 cut(s) 60, 496
Sau3AI GATC 7 cut(s) 64, 332, 489, 510, 538, 648, 670
Sau96I GGNCC 3 cut(s) 456, 553, 714
SchI GAGTC 3 cut(s) 130, 174, 201
ScrFI CCNGG 1 cut(s) 524
SfaNI GCATC 2 cut(s) 240, 618
SinI GGWCC 3 cut(s) 456, 553, 714
SmiMI CAYNNNNRTG 2 cut(s) 375, 699
SmlI CTYRAG 2 cut(s) 182, 542
SmoI CTYRAG 2 cut(s) 182, 542
SphI GCATGC 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 3 cut(s) 493, 496, 556
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 1 cut(s) 730
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 2 cut(s) 30, 717
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 120, 439
TaqI TCGA 1 cut(s) 669
TaqII GACCGA 1 cut(s) 521
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 24, 423
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 5 cut(s) 323, 553, 622, 683, 717
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 3 cut(s) 456, 553, 714
XceI RCATGY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 474
ZraI GACGTC 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.