Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002901.1

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

33817 .. 36506

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002901.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggaaaacacagaagcgatgacggcggagaaccagaacgacatcgttgacaagttgaagatggaggatcttgaagatgacacggatcttaaggtcctcactatctccaggcgcttccctaaacacagaagtgcagacaagaacaagcgcatttcgaaggggaagaagactgggaagaagaaggcagctgacccttttgcgaagaaggattggtatgatatcaaggcacctaatctcttccatgtgaggcaggtcggcaaaaccctcgtcaccagaactcagggaactaagattgcttctgaaggactcaaacatcgagtgttcgagatttctctggctgatctccagaaggatgaggatcatgcttacagaaagatccgtctaagagcagaggatgtgcaagggaaggatgtactcacaaacttctgggtgtggcaccgttttgctgctgtcaatgggatagatttcgccacagacaagctgaggtcattggtccgaaagtggcagacactgattgaggctcatgtggatgtaaagactaccgataactatacccttaggatgttctgtattgcgtttaccaagaggcgcgcaaatcaggtcaagcgtacctgctatgctcaatccagtcagattcgtcagattcgccgcaagatgagagaaattatggtaaaccaggcttcagcctgtgatctgaaggagttggtgcaaaaattcattcccgagatgattggcagagagattgaaaaggctacatccagcatctacccactgcagaatgttttcattcgaaaagtcaagctattgaaagctcccaagttcgatcttggcaagttgatggaggttcatgagaaaaaagaggatgttggtgtgaaaattgatagaccagctgaagaaattgtgcccgaggagaccaccattgttggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

310

Amino Acids

35.93

Weight (kDa)

9.66

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	241, 620
AccB1I	GGYRCC	2 cut(s)	226, 435
AccII	CGCG	1 cut(s)	591
AciI	CCGC	2 cut(s)	26, 649
AclWI	GGATC	4 cut(s)	75, 93, 366, 370
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	4 cut(s)	321, 666, 716, 912
AfaI	GTAC	2 cut(s)	414, 610
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	58, 74, 746, 808
AjnI	CCWGG	2 cut(s)	107, 675
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	188, 481, 802, 812, 890
AluI	AGCT	5 cut(s)	188, 481, 802, 812, 890
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	4 cut(s)	75, 93, 366, 370
AlwNI	CAGNNNCTG	1 cut(s)	511
Ama87I	CYCGRG	2 cut(s)	722, 905
ApeKI	GCWGC	2 cut(s)	185, 446
ApoI	RAATTY	1 cut(s)	713
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
Asp700I	GAANNNNTTC	1 cut(s)	782
AspLEI	GCGC	4 cut(s)	114, 150, 591, 593
AspS9I	GGNCC	2 cut(s)	94, 493
AsuHPI	GGTGA	1 cut(s)	262
AsuII	TTCGAA	2 cut(s)	155, 790
AvaI	CYCGRG	2 cut(s)	722, 905
AvaII	GGWCC	2 cut(s)	94, 493
AxyI	CCTNAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	906
BanI	GGYRCC	2 cut(s)	226, 435
BbsI	GAAGAC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	197, 433
BccI	CCATC	2 cut(s)	55, 832
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	2 cut(s)	109, 677
BcoDI	GTCTC	1 cut(s)	905
BfmI	CTRYAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	89
BfuAI	ACCTGC	2 cut(s)	241, 620
BisI	GCNGC	3 cut(s)	186, 447, 649
BlsI	GCNGC	3 cut(s)	187, 448, 650
Bme1390I	CCNGG	2 cut(s)	109, 677
Bme18I	GGWCC	2 cut(s)	94, 493
BmeT110I	CYCGRG	2 cut(s)	722, 905
BmgT120I	GGNCC	2 cut(s)	94, 493
BmiI	GGNNCC	2 cut(s)	228, 437
BmrFI	CCNGG	2 cut(s)	109, 677
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	771
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	91, 329
Bpu10I	CCTNAGC	1 cut(s)	482
Bpu14I	TTCGAA	2 cut(s)	155, 790
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	1 cut(s)	906
Bse1I	ACTGG	2 cut(s)	175, 627
Bse21I	CCTNAGG	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	109, 677
BseDI	CCNNGG	1 cut(s)	906
BseGI	GGATG	7 cut(s)	358, 400, 415, 535, 567, 755, 868
BseJI	GATNNNNATC	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	293, 473
BseNI	ACTGG	2 cut(s)	175, 627
BsePI	GCGCGC	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	923
BseSI	GKGCMC	1 cut(s)	906
BseXI	GCAGC	2 cut(s)	197, 433
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	591
BshNI	GGYRCC	2 cut(s)	226, 435
BsiHKCI	CYCGRG	2 cut(s)	722, 905
BsmAI	GTCTC	1 cut(s)	905
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	2 cut(s)	722, 905
Bsp119I	TTCGAA	2 cut(s)	155, 790
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp143I	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
BspACI	CCGC	2 cut(s)	26, 649
BspCNI	CTCAG	2 cut(s)	292, 474
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	228, 437
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	2 cut(s)	241, 620
BspPI	GGATC	4 cut(s)	75, 93, 366, 370
BspT104I	TTCGAA	2 cut(s)	155, 790
BspT107I	GGYRCC	2 cut(s)	226, 435
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	905
BsrI	ACTGG	2 cut(s)	175, 627
BssECI	CCNNGG	1 cut(s)	906
BssHII	GCGCGC	1 cut(s)	589
BssMI	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
Bst2UI	CCWGG	2 cut(s)	109, 677
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	242
BstAFI	CTTAAG	1 cut(s)	89
BstBI	TTCGAA	2 cut(s)	155, 790
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	5 cut(s)	279, 288, 383, 482, 557
BstF5I	GGATG	7 cut(s)	358, 400, 415, 535, 567, 755, 868
BstFNI	CGCG	1 cut(s)	591
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	4 cut(s)	114, 150, 591, 593
BstKTI	GATC	7 cut(s)	70, 88, 343, 361, 378, 694, 826
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	109, 677
BstSCI	CCNGG	2 cut(s)	107, 675
BstSFI	CTRYAG	1 cut(s)	773
BstSLI	GKGCMC	1 cut(s)	906
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	197, 433
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	3 cut(s)	67, 85, 375
BstYI	RGATCY	3 cut(s)	67, 85, 375
Bsu36I	CCTNAGG	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	7 cut(s)	358, 400, 415, 535, 567, 755, 868
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	2 cut(s)	509, 770
BveI	ACCTGC	2 cut(s)	241, 620
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	511
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	4 cut(s)	114, 150, 591, 593
Cfr13I	GGNCC	2 cut(s)	94, 493
Csp6I	GTAC	2 cut(s)	413, 609
CspCI	CAANNNNNGTGG	1 cut(s)	904
CviAII	CATG	5 cut(s)	242, 362, 524, 848, 930
CviQI	GTAC	2 cut(s)	413, 609
DdeI	CTNAG	5 cut(s)	279, 288, 383, 482, 557
DpnI	GATC	7 cut(s)	69, 87, 342, 360, 377, 693, 825
DpnII	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	905
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	94, 493
Eco57I	CTGAAG	4 cut(s)	321, 666, 716, 912
Eco81I	CCTNAGG	1 cut(s)	557
Eco88I	CYCGRG	2 cut(s)	722, 905
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	107, 675
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	5 cut(s)	245, 365, 527, 851, 933
FaiI	YATR	9 cut(s)	216, 243, 363, 525, 552, 618, 668, 849, 931
FatI	CATG	5 cut(s)	241, 361, 523, 847, 929
Fnu4HI	GCNGC	3 cut(s)	186, 447, 649
FokI	GGATG	7 cut(s)	365, 407, 422, 542, 574, 742, 875
Fsp4HI	GCNGC	3 cut(s)	186, 447, 649
GlaI	GCGC	4 cut(s)	113, 149, 590, 592
GluI	GCNGC	3 cut(s)	186, 447, 649
GsuI	CTGGAG	2 cut(s)	91, 329
HaeII	RGCGCY	1 cut(s)	115
HhaI	GCGC	4 cut(s)	114, 150, 591, 593
Hin1II	CATG	5 cut(s)	245, 365, 527, 851, 933
Hin6I	GCGC	4 cut(s)	112, 148, 589, 591
HinP1I	GCGC	4 cut(s)	112, 148, 589, 591
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	306, 634, 643
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	3 cut(s)	49, 579, 673
Hpy188I	TCNGA	5 cut(s)	301, 497, 633, 642, 696
Hpy188III	TCNNGA	5 cut(s)	71, 325, 346, 722, 848
Hpy8I	GTNNAC	3 cut(s)	49, 579, 673
HpyAV	CCTTC	7 cut(s)	151, 175, 199, 296, 343, 400, 691
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	134, 400, 709, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	5 cut(s)	279, 288, 383, 482, 557
Hsp92II	CATG	5 cut(s)	245, 365, 527, 851, 933
HspAI	GCGC	4 cut(s)	112, 148, 589, 591
Kzo9I	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
LmnI	GCTCC	2 cut(s)	817, 926
Lsp1109I	GCAGC	2 cut(s)	197, 433
LweI	GCATC	1 cut(s)	771
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	7 cut(s)	69, 87, 342, 360, 377, 693, 825
MboI	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
MboII	GAAGA	9 cut(s)	70, 86, 175, 178, 187, 190, 214, 229, 905
MflI	RGATCY	3 cut(s)	67, 85, 375
MhlI	GDGCHC	1 cut(s)	906
MluCI	AATT	4 cut(s)	663, 713, 876, 897
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	782
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	129, 528
MspA1I	CMGCKG	2 cut(s)	188, 890
MspCI	CTTAAG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	109, 677
MvaI	CCWGG	2 cut(s)	109, 677
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
NlaIII	CATG	5 cut(s)	245, 365, 527, 851, 933
NlaIV	GGNNCC	2 cut(s)	228, 437
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	2 cut(s)	155, 790
OliI	CACNNNNGTG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	847
PauI	GCGCGC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	2 cut(s)	634, 643
PkrI	GCNGC	3 cut(s)	187, 448, 650
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	107, 675
PspGI	CCWGG	2 cut(s)	107, 675
PspN4I	GGNNCC	2 cut(s)	228, 437
PspPI	GGNCC	2 cut(s)	94, 493
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	3 cut(s)	67, 85, 375
PteI	GCGCGC	1 cut(s)	589
PvuII	CAGCTG	2 cut(s)	188, 890
RsaI	GTAC	2 cut(s)	414, 610
RsaNI	GTAC	2 cut(s)	413, 609
RseI	CAYNNNNRTG	2 cut(s)	129, 528
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	186, 447, 649
Sau3AI	GATC	7 cut(s)	67, 85, 340, 358, 375, 691, 823
Sau96I	GGNCC	2 cut(s)	94, 493
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	109, 677
SduI	GDGCHC	1 cut(s)	906
SfaNI	GCATC	1 cut(s)	771
SfcI	CTRYAG	1 cut(s)	773
SfuI	TTCGAA	2 cut(s)	155, 790
SinI	GGWCC	2 cut(s)	94, 493
SmiMI	CAYNNNNRTG	2 cut(s)	129, 528
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	663, 713, 876, 897
SsiI	CCGC	2 cut(s)	26, 649
StyD4I	CCNGG	2 cut(s)	107, 675
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	5 cut(s)	155, 316, 324, 790, 822
TasI	AATT	4 cut(s)	663, 713, 876, 897
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	2 cut(s)	634, 643
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	516, 777
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	185, 446
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	706, 775, 836
TspGWI	ACGGA	2 cut(s)	98, 368
TspRI	CASTG	2 cut(s)	516, 777
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	94, 493
XapI	RAATTY	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.