Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

1366613 .. 1369336

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G019500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCGTTGGGAAGAACAAGAGGATTTCCAAGTCCAAGAAAGGAGGAAAGAAGAAAGCGGCTGATCCGTTTGCCAAGAAGGATTGGTATGATATCAAGGCCCCTTCGTTGTTCCAGAACAAGAATGTGGGTAAAACCCTCGTCTCCCGTACTCAGGGTACCAAGATTGCTTCAGAAGGACTCAAACATAGAGTCTTTGAGGTATCGCTTGCTGACCTTCAGGGGGATGAGGAACATGCTTACAGAAAGATGCGATTGAGAGCTGAAGATGTCCAAGGGAGGAATGTTCTTACAAATTTCTGGGGAATGAACTTCACAACCGACAAGTTGAGGTCATTGGTGAGGAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTGAAGACCACAGACAACTACACTCTCAGGTTGTTCTGCATTGGCTTCACCAAGAGACGTCCAAATCAGGTCAAGAGGACCTGTTATGCACAATCTAGCCAGATTAGACAGATCCGCCGTAAGATGAGGGAGATCATGGTCGCCCAGGCGACATCTAGTGATCTAAAGGACTTGGTTCGCAAGTTCATTGCTGAGAGTATTGGTAAAGAGATTGAGAAGGCAACCATGAGCATCTATCCATTGCAAAATGTCTTCATCCGGAAAGTCAAGATCTTGAAAGCACCAAAGTTTGATCTTACCAAGCTAATGGAGGTCCATGGTGGTAATGAAGATGTTGGTCAGAAGGTTGAAAGACCTGCTGAAGAAGCAGTGACTGAGCCCCCACCAGAAATCGTTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

261

Amino Acids

29.68

Weight (kDa)

10.02

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	742
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	636
AciI	CCGC	2 cut(s)	59, 493
AclWI	GGATC	2 cut(s)	59, 484
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	4 cut(s)	156, 203, 285, 759
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	2 cut(s)	151, 160
AfiI	CCNNNNNNNGG	2 cut(s)	154, 223
AgsI	TTSAA	3 cut(s)	365, 655, 728
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	4 cut(s)	263, 368, 682, 779
AluI	AGCT	4 cut(s)	263, 368, 682, 779
Alw26I	GTCTC	2 cut(s)	148, 427
AlwI	GGATC	2 cut(s)	59, 484
AlwNI	CAGNNNCTG	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	636
AoxI	GGCC	2 cut(s)	3, 99
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
Asp718I	GGTACC	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	100, 456, 691
AsuHPI	GGTGA	2 cut(s)	352, 418
AvaII	GGWCC	2 cut(s)	456, 691
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	389, 622
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	2 cut(s)	148, 427
BfaI	CTAG	2 cut(s)	474, 534
BfuAI	ACCTGC	1 cut(s)	742
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	2 cut(s)	456, 691
BmgT120I	GGNCC	3 cut(s)	100, 456, 691
BmiI	GGNNCC	2 cut(s)	102, 160
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	240, 618
BpiI	GAAGAC	2 cut(s)	389, 622
BsaHI	GRCGYC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	274, 522, 694
BsaWI	WCCGGW	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 223
Bse3DI	GCAATG	2 cut(s)	564, 617
BseAI	TCCGGA	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	3 cut(s)	274, 522, 694
BseGI	GGATG	3 cut(s)	232, 382, 633
BseLI	CCNNNNNNNGG	2 cut(s)	154, 223
BseMI	GCAATG	2 cut(s)	564, 617
BseMII	CTCAG	4 cut(s)	167, 418, 561, 744
BshFI	GGCC	2 cut(s)	5, 101
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	154, 223
BsmAI	GTCTC	2 cut(s)	148, 427
BsmBI	CGTCTC	2 cut(s)	148, 427
BsnI	GGCC	2 cut(s)	5, 101
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp13I	TCCGGA	1 cut(s)	636
Bsp143I	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
Bsp19I	CCATGG	1 cut(s)	694
BspACI	CCGC	2 cut(s)	59, 493
BspANI	GGCC	2 cut(s)	5, 101
BspCNI	CTCAG	4 cut(s)	166, 417, 562, 745
BspEI	TCCGGA	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	102, 160
BspMI	ACCTGC	1 cut(s)	742
BspPI	GGATC	2 cut(s)	59, 484
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	564, 617
BssECI	CCNNGG	3 cut(s)	274, 522, 694
BssMI	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
BssNI	GRCGYC	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	274, 694
Bst2UI	CCWGG	1 cut(s)	524
BstACI	GRCGYC	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	153, 404, 570, 753
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	3 cut(s)	232, 382, 633
BstKTI	GATC	6 cut(s)	67, 492, 513, 541, 651, 673
BstMAI	GTCTC	2 cut(s)	148, 427
BstMBI	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	522
BstV2I	GAAGAC	2 cut(s)	389, 622
BstX2I	RGATCY	2 cut(s)	489, 648
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	2 cut(s)	489, 648
BsuRI	GGCC	2 cut(s)	5, 101
BtgI	CCRYGG	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	232, 382, 633
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	752
Cfr13I	GGNCC	3 cut(s)	100, 456, 691
Csp6I	GTAC	2 cut(s)	150, 159
CviAII	CATG	5 cut(s)	236, 371, 514, 604, 695
CviQI	GTAC	2 cut(s)	150, 159
DdeI	CTNAG	4 cut(s)	153, 404, 570, 753
DpnI	GATC	6 cut(s)	66, 491, 512, 540, 650, 672
DpnII	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	274, 694
Eco24I	GRGCYC	1 cut(s)	759
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	456, 691
Eco57I	CTGAAG	4 cut(s)	156, 203, 285, 759
EcoO109I	RGGNCCY	2 cut(s)	100, 456
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	274, 694
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	274, 694
Esp3I	CGTCTC	2 cut(s)	148, 427
FaeI	CATG	5 cut(s)	239, 374, 517, 607, 698
FaiI	YATR	8 cut(s)	90, 189, 237, 372, 465, 515, 605, 696
FatI	CATG	5 cut(s)	235, 370, 513, 603, 694
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	3 cut(s)	239, 389, 620
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	474, 534
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	5, 101
HapII	CCGG	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	239, 374, 517, 607, 698
HinfI	GANTC	2 cut(s)	180, 192
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	2 cut(s)	352, 418
Hpy188I	TCNGA	2 cut(s)	175, 720
Hpy188III	TCNNGA	5 cut(s)	115, 451, 637, 646, 652
HpyAV	CCTTC	6 cut(s)	73, 114, 170, 227, 589, 715
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	417, 467, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	4 cut(s)	153, 404, 570, 753
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	5 cut(s)	239, 374, 517, 607, 698
Kpn2I	TCCGGA	1 cut(s)	636
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
LmnI	GCTCC	1 cut(s)	776
LweI	GCATC	2 cut(s)	240, 618
MaeI	CTAG	2 cut(s)	474, 534
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	6 cut(s)	66, 491, 512, 540, 650, 672
MboI	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
MboII	GAAGA	7 cut(s)	25, 64, 278, 394, 622, 719, 752
MflI	RGATCY	2 cut(s)	489, 648
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	2 cut(s)	295, 360
MlyI	GAGTC	2 cut(s)	174, 201
MmeI	TCCRAC	1 cut(s)	754
MroI	TCCGGA	1 cut(s)	636
MseI	TTAA	2 cut(s)	359, 781
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	694
NdeII	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
NlaIII	CATG	5 cut(s)	239, 374, 517, 607, 698
NlaIV	GGNNCC	2 cut(s)	102, 160
NmuCI	GTSAC	1 cut(s)	748
NspI	RCATGY	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	174, 200
PpsI	GAGTC	2 cut(s)	174, 200
PpuMI	RGGWCCY	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	102, 160
PspPI	GGNCC	3 cut(s)	100, 456, 691
PspPPI	RGGWCCY	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	2 cut(s)	489, 648
RsaI	GTAC	2 cut(s)	151, 160
RsaNI	GTAC	2 cut(s)	150, 159
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	359, 781
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	6 cut(s)	64, 489, 510, 538, 648, 670
Sau96I	GGNCC	3 cut(s)	100, 456, 691
SchI	GAGTC	2 cut(s)	174, 201
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	2 cut(s)	240, 618
SinI	GGWCC	2 cut(s)	456, 691
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	2 cut(s)	295, 360
SsiI	CCGC	2 cut(s)	59, 493
SspMI	CTAG	2 cut(s)	474, 534
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	274, 694
TaiI	ACGT	1 cut(s)	439
TasI	AATT	2 cut(s)	295, 360
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	359, 781
Tru9I	TTAA	2 cut(s)	359, 781
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	1 cut(s)	748
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	4 cut(s)	323, 553, 622, 720
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	753
VpaK11BI	GGWCC	2 cut(s)	456, 691
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	2 cut(s)	474, 534
ZraI	GACGTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.