Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Forward (+)

49393240 .. 49395575

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAAACACAGAAGCGACGACGGCGGAGAACCAGAACGACGTCGTTGACAAGTTGAAGATGGAGGATCTTGAAGATGACACGGATCTTGAGGTCCTCACTATCTCCAGGCGCTTCCCTAAACACAGAAGTGCAGACAAGAACAAGCGCATTTCGAAGGGGAAGAAGACTGGGAAGAAGAAGGCAGCTGACCCTTTTGCGAAGAAGGATTGGTATGATATCAAGGCACCTAATCTCTTCCATGTGAGGCAGGTCGGCAAAACCCTCGTCACCAGAACTCAGGGAACTAAGGGGATAGATTTCACCACTGACAAGCTGAGGTCATTGGTCCGAAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTAAAGACCACCGACAACTCTACCCTTAGGATGTTCTGTATTGCTTTTACCAAGAGACGCGTAAATCAGGTCAAGCGTACCTGCTATGCTCAATCCAGTCAGATTCGTCAGATTCGCCGCAAGATGAGAGAAATTATGGTAAACCAGGCTTCAGCCTGTGATCTGAAAGGAGTTGGTGCAAAAATTCATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

186

Amino Acids

21.4

Weight (kDa)

10.01

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	58 - 98	5.7e-10	Ribosomal S3Ae family
Ribosomal_S3Ae	PF01015	97 - 183	4.3e-27	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	2 cut(s)	241, 455
AccB1I	GGYRCC	1 cut(s)	226
AccII	CGCG	1 cut(s)	426
AciI	CCGC	2 cut(s)	26, 484
AclWI	GGATC	2 cut(s)	75, 93
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	58, 74
AjnI	CCWGG	2 cut(s)	107, 510
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	188, 316
AluI	AGCT	2 cut(s)	188, 316
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	2 cut(s)	75, 93
AlwNI	CAGNNNCTG	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	549
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AspLEI	GCGC	2 cut(s)	114, 150
AspS9I	GGNCC	2 cut(s)	94, 328
AsuHPI	GGTGA	2 cut(s)	262, 295
AsuII	TTCGAA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	94, 328
AxyI	CCTNAGG	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	2 cut(s)	109, 512
BcoDI	GTCTC	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	115
BfuAI	ACCTGC	2 cut(s)	241, 455
BisI	GCNGC	2 cut(s)	186, 484
BlsI	GCNGC	2 cut(s)	187, 485
Bme1390I	CCNGG	2 cut(s)	109, 512
Bme18I	GGWCC	2 cut(s)	94, 328
BmgT120I	GGNCC	2 cut(s)	94, 328
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	109, 512
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	175, 462
Bse21I	CCTNAGG	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	109, 512
BseGI	GGATG	2 cut(s)	370, 402
BseMII	CTCAG	2 cut(s)	293, 308
BseNI	ACTGG	2 cut(s)	175, 462
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	415
BsmBI	CGTCTC	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	67, 85, 526
BspACI	CCGC	2 cut(s)	26, 484
BspCNI	CTCAG	2 cut(s)	292, 309
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	2 cut(s)	241, 455
BspPI	GGATC	2 cut(s)	75, 93
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	175, 462
BssMI	GATC	3 cut(s)	67, 85, 526
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	109, 512
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	4 cut(s)	279, 288, 317, 392
BstF5I	GGATG	2 cut(s)	370, 402
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 150
BstKTI	GATC	3 cut(s)	70, 88, 529
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	3 cut(s)	67, 85, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	109, 512
BstSCI	CCNGG	2 cut(s)	107, 510
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	2 cut(s)	67, 85
BstYI	RGATCY	2 cut(s)	67, 85
Bsu36I	CCTNAGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	370, 402
BtsIMutI	CAGTG	2 cut(s)	306, 344
BveI	ACCTGC	2 cut(s)	241, 455
CaiI	CAGNNNCTG	1 cut(s)	346
CfoI	GCGC	2 cut(s)	114, 150
Cfr13I	GGNCC	2 cut(s)	94, 328
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	242, 359
CviJI	RGCY	5 cut(s)	188, 316, 356, 515, 521
CviKI_1	RGCY	5 cut(s)	188, 316, 356, 515, 521
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	4 cut(s)	279, 288, 317, 392
DpnI	GATC	3 cut(s)	69, 87, 528
DpnII	GATC	3 cut(s)	67, 85, 526
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	94, 328
Eco57I	CTGAAG	1 cut(s)	501
Eco81I	CCTNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	107, 510
EcoRV	GATATC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	2 cut(s)	245, 362
FaiI	YATR	5 cut(s)	216, 243, 360, 453, 503
FatI	CATG	2 cut(s)	241, 358
Fnu4HI	GCNGC	2 cut(s)	186, 484
FokI	GGATG	2 cut(s)	377, 409
Fsp4HI	GCNGC	2 cut(s)	186, 484
GlaI	GCGC	2 cut(s)	113, 149
GluI	GCNGC	2 cut(s)	186, 484
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	115
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	2 cut(s)	114, 150
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	245, 362
Hin6I	GCGC	2 cut(s)	112, 148
HinP1I	GCGC	2 cut(s)	112, 148
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	469, 478
HphI	GGTGA	2 cut(s)	262, 295
Hpy166II	GTNNAC	2 cut(s)	49, 508
Hpy188I	TCNGA	4 cut(s)	332, 468, 477, 531
Hpy188III	TCNNGA	3 cut(s)	71, 89, 558
Hpy8I	GTNNAC	2 cut(s)	49, 508
Hpy99I	CGWCG	4 cut(s)	22, 25, 44, 47
HpyAV	CCTTC	3 cut(s)	151, 175, 199
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	134, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	279, 288, 317, 392
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	245, 362
HspAI	GCGC	2 cut(s)	112, 148
Kzo9I	GATC	3 cut(s)	67, 85, 526
Lsp1109I	GCAGC	1 cut(s)	197
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	69, 87, 528
MboI	GATC	3 cut(s)	67, 85, 526
MboII	GAAGA	8 cut(s)	70, 86, 175, 178, 187, 190, 214, 229
MflI	RGATCY	2 cut(s)	67, 85
MluCI	AATT	2 cut(s)	498, 549
MluI	ACGCGT	1 cut(s)	424
MnlI	CCTC	7 cut(s)	58, 85, 107, 240, 275, 312, 346
MslI	CAYNNNNRTG	2 cut(s)	129, 363
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	109, 512
MvaI	CCWGG	2 cut(s)	109, 512
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	67, 85, 526
NlaIII	CATG	2 cut(s)	245, 362
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	469, 478
PkrI	GCNGC	2 cut(s)	187, 485
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	107, 510
PspGI	CCWGG	2 cut(s)	107, 510
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	94, 328
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	67, 85
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	2 cut(s)	129, 363
SatI	GCNGC	2 cut(s)	186, 484
Sau3AI	GATC	3 cut(s)	67, 85, 526
Sau96I	GGNCC	2 cut(s)	94, 328
ScrFI	CCNGG	2 cut(s)	109, 512
SetI	ASST	9 cut(s)	45, 96, 190, 232, 255, 318, 323, 438, 449
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	2 cut(s)	94, 328
SmiMI	CAYNNNNRTG	2 cut(s)	129, 363
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	498, 549
SsiI	CCGC	2 cut(s)	26, 484
StyD4I	CCNGG	2 cut(s)	107, 510
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	498, 549
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	469, 478
TscAI	CASTG	2 cut(s)	313, 351
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	542
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	313, 351
VpaK11BI	GGWCC	2 cut(s)	94, 328
XapI	RAATTY	1 cut(s)	549
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.