Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Forward (+)

1854765 .. 1856709

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03341.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCGTCGGCAAGAACAAGCGAATTTCGAAGGGGAAGAAGGGAGGGAAGAAGAAGGCAGCTGACCCGTTTGCCAAGAAGGATTGGTACGATGTCACGGCACCTAGTCTCTTCAATGTCAGGAAAGTCGGTGTGACCCTCGTCACCAGAACTCAGGGAACTAAGATTGCTTCTGAAGGACTCAAGCATCGAGTATTCGAGGTTTCTCTGGCTGATCTCCAGAAGGATGAGGATCATGCTTACAGAAAGATACGTCTAAGAGCAGAAGATGTGCAAGGGAAAGATGTGCTCACTAACTTCTGGGGGATGGATTTCACCACTGACAAGCTGAGGTCGTTAGTCCGGAAGTGGCAGACACTGATCGAGGCTCATGTGGATGTAAAGACTACTGATAACTATACCCTTAGGTTGTTTTGTATTGCATTTACCAAGAGACGCGCAAATCAGGTCAAGCGTACCTGCTATGCTCAATCCAGTCAGATTCGTCAGATTCGCCGCAAGATGAGAGAAATTATGATAAACCAGGCTTCAGCCTGTGATCTGAAGGAGTTGGTGCAGAAGTTTATCCCTGAGATGATTGGCAGAGAGATTGAAAAGGCAACATCCAGCATCTATCCACTGCAACATGTTTTCATTCGAAAAGCCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGCAAGTTGATGGAGGTTCATGAGAAAAAAGAGGACGTCGGTGTGAAGATTGATAGACCAGCAGAAGAAATTGTGCCCGAGGAGACCACCATTGTCGGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

260

Amino Acids

29.72

Weight (kDa)

9.87

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	16 - 221	2.1e-80	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	714
Acc36I	ACCTGC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	100
AccII	CGCG	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	195, 513, 563
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	2 cut(s)	89, 457
AfiI	CCNNNNNNNGG	1 cut(s)	771
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	3 cut(s)	115, 593, 655
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	62, 328, 659
AluI	AGCT	3 cut(s)	62, 328, 659
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	3 cut(s)	113, 427, 752
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	136, 307
AsuII	TTCGAA	2 cut(s)	29, 637
AvaI	CYCGRG	1 cut(s)	752
AxyI	CCTNAGG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	100
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	301, 679
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	113, 427, 752
BfaI	CTAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	2 cut(s)	60, 496
BlsI	GCNGC	2 cut(s)	61, 497
Bme1390I	CCNGG	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	196, 618
BoxI	GACNNNNGTC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu14I	TTCGAA	2 cut(s)	29, 637
BpuEI	CTTGAG	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	753
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	771
Bse1I	ACTGG	1 cut(s)	474
Bse21I	CCTNAGG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	4 cut(s)	232, 312, 382, 602
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	167, 320, 561
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	771
BsmAI	GTCTC	3 cut(s)	113, 427, 752
BsmBI	CGTCTC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	752
BsoBI	CYCGRG	1 cut(s)	752
Bsp119I	TTCGAA	2 cut(s)	29, 637
Bsp1286I	GDGCHC	2 cut(s)	291, 753
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	166, 321, 562
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	240
BspT104I	TTCGAA	2 cut(s)	29, 637
BspT107I	GGYRCC	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
BssNI	GRCGYC	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	711
BstBI	TTCGAA	2 cut(s)	29, 637
BstDEI	CTNAG	6 cut(s)	153, 162, 257, 329, 404, 570
BstF5I	GGATG	4 cut(s)	232, 312, 382, 602
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	6 cut(s)	217, 235, 363, 541, 651, 673
BstMAI	GTCTC	3 cut(s)	113, 427, 752
BstMBI	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
Bsu36I	CCTNAGG	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	4 cut(s)	232, 312, 382, 602
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	3 cut(s)	318, 356, 617
BveI	ACCTGC	1 cut(s)	467
CaiI	CAGNNNCTG	1 cut(s)	358
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	440
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	88, 456
CviAII	CATG	5 cut(s)	236, 371, 626, 695, 777
CviJI	RGCY	9 cut(s)	5, 62, 212, 328, 368, 527, 533, 644, 659
CviKI_1	RGCY	9 cut(s)	5, 62, 212, 328, 368, 527, 533, 644, 659
CviQI	GTAC	2 cut(s)	88, 456
DdeI	CTNAG	6 cut(s)	153, 162, 257, 329, 404, 570
DpnI	GATC	6 cut(s)	216, 234, 362, 540, 650, 672
DpnII	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	752
Eco57I	CTGAAG	3 cut(s)	195, 513, 563
Eco81I	CCTNAGG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	5 cut(s)	239, 374, 629, 698, 780
FaiI	YATR	8 cut(s)	237, 372, 399, 465, 515, 627, 696, 778
FatI	CATG	5 cut(s)	235, 370, 625, 694, 776
Fnu4HI	GCNGC	2 cut(s)	60, 496
FokI	GGATG	4 cut(s)	239, 319, 389, 589
Fsp4HI	GCNGC	2 cut(s)	60, 496
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	2 cut(s)	60, 496
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	5 cut(s)	239, 374, 629, 698, 780
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	3 cut(s)	180, 481, 490
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	2 cut(s)	136, 307
Hpy188I	TCNGA	4 cut(s)	175, 480, 489, 543
Hpy188III	TCNNGA	5 cut(s)	121, 220, 343, 652, 695
Hpy99I	CGWCG	2 cut(s)	11, 716
HpyAV	CCTTC	7 cut(s)	25, 34, 49, 73, 170, 217, 538
HpyCH4IV	ACGT	2 cut(s)	253, 711
HpyCH4V	TGCA	4 cut(s)	274, 422, 556, 622
HpyF3I	CTNAG	6 cut(s)	153, 162, 257, 329, 404, 570
HpySE526I	ACGT	2 cut(s)	253, 711
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	5 cut(s)	239, 374, 629, 698, 780
HspAI	GCGC	1 cut(s)	438
Kpn2I	TCCGGA	1 cut(s)	342
Kzo9I	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	196, 618
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	253, 711
MaeIII	GTNAC	3 cut(s)	94, 133, 142
MalI	GATC	6 cut(s)	216, 234, 362, 540, 650, 672
MboI	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
MboII	GAAGA	7 cut(s)	49, 61, 64, 103, 278, 733, 752
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	2 cut(s)	291, 753
MluCI	AATT	3 cut(s)	24, 510, 744
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	9 cut(s)	38, 149, 193, 223, 324, 358, 682, 700, 748
MroI	TCCGGA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	438
NdeII	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
NlaIII	CATG	5 cut(s)	239, 374, 629, 698, 780
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	94, 133, 142
NspI	RCATGY	1 cut(s)	629
NspV	TTCGAA	2 cut(s)	29, 637
PagI	TCATGA	1 cut(s)	694
PciI	ACATGT	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	481, 490
PkrI	GCNGC	2 cut(s)	61, 497
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PscI	ACATGT	1 cut(s)	625
PshAI	GACNNNNGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	89, 457
RsaNI	GTAC	2 cut(s)	88, 456
RseI	CAYNNNNRTG	1 cut(s)	375
SatI	GCNGC	2 cut(s)	60, 496
Sau3AI	GATC	6 cut(s)	214, 232, 360, 538, 648, 670
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	291, 753
SfaNI	GCATC	2 cut(s)	196, 618
SfuI	TTCGAA	2 cut(s)	29, 637
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	24, 510, 744
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	522
TaiI	ACGT	2 cut(s)	256, 714
TaqI	TCGA	5 cut(s)	29, 190, 198, 363, 637
TasI	AATT	3 cut(s)	24, 510, 744
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	481, 490
TscAI	CASTG	3 cut(s)	325, 363, 624
TseFI	GTSAC	3 cut(s)	94, 133, 142
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	3 cut(s)	94, 133, 142
TspDTI	ATGAA	2 cut(s)	622, 683
TspRI	CASTG	3 cut(s)	325, 363, 624
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	1 cut(s)	105
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.