Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Forward (+)

63208036 .. 63210066

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCCGTCGGGAAGAACAAGAGAATCTCCAAGGGCAAGAAGGGAGGAAAGAAGAAAGCAGCTGATCCTTTTGCCAAGAAGGACTGGTATGACATCAAGGCTCCTTCAATCTTCAACGTCAAGCAGGTCGGAAAGACTCTAGTCACCCGTACTCAGGGTACCAAGGGAATGAACTTCACAACTGACAAGTTGAGATCTTTGGTGCGCAAATGGCAAACCTTGATTGAAGCTCATGTGGATGTGAAGACCACAGACAACTACACACTGAGGATGTTCTGCATTGGATTCACCAAGAGACGTCCTAATCAAGTCAAGAGGACCTGTTACGCTCAGTCTAGCCAGATTAGACAGATCCGCCGCAAGATGACCGAGATTATGGTTGCCCAGGCAACATCTTGTGATCTCAAGGATTTGGTCCGCAAGTTCATTGCTGAGAGTATTGGTAAAGATATTGAGAAGGCAACTACAAGCATCTATCCTCTACAAAATGTCTTCATCAGGAAGGTCAAGATCTTAAAGGCACCCAAGTTTGATCTTGGAAAGCTTATGGAGGTTCATGGGGATGAAGATGTTGGGACCAAGGTTGAGAGGCCTGCCGAAGAAGCAGTCCCTGAGGCACCAATTGAGATTGTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

214

Amino Acids

24.07

Weight (kDa)

10.01

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	16 - 56	1.7e-10	Ribosomal S3Ae family
Ribosomal_S3Ae	PF01015	55 - 175	2.1e-45	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	301
Acc16I	TGCGCA	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	3 cut(s)	158, 520, 616
AciI	CCGC	3 cut(s)	355, 358, 418
AclWI	GGATC	2 cut(s)	59, 346
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	2 cut(s)	151, 160
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	108, 115, 227
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	4 cut(s)	62, 230, 544, 638
AluI	AGCT	4 cut(s)	62, 230, 544, 638
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	59, 346
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	3, 590
ApeKI	GCWGC	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	318, 415, 576
AsuHPI	GGTGA	2 cut(s)	136, 280
AvaII	GGWCC	3 cut(s)	318, 415, 576
AxyI	CCTNAGG	1 cut(s)	612
BanI	GGYRCC	3 cut(s)	158, 520, 616
BbsI	GAAGAC	2 cut(s)	251, 484
BbvI	GCAGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	140, 336
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	2 cut(s)	194, 510
BisI	GCNGC	2 cut(s)	60, 358
BlsI	GCNGC	2 cut(s)	61, 359
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	3 cut(s)	318, 415, 576
BmgT120I	GGNCC	3 cut(s)	318, 415, 576
BmiI	GGNNCC	5 cut(s)	102, 160, 522, 577, 618
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	480
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	251, 484
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	4 cut(s)	30, 162, 384, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	89
Bse21I	CCTNAGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	30, 162, 384, 579
BseGI	GGATG	3 cut(s)	244, 276, 568
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	5 cut(s)	167, 257, 344, 423, 603
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	2 cut(s)	5, 592
BshNI	GGYRCC	3 cut(s)	158, 520, 616
BslFI	GGGAC	2 cut(s)	589, 593
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	289
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	589, 593
BsnI	GGCC	2 cut(s)	5, 592
Bsp143I	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
BspACI	CCGC	3 cut(s)	355, 358, 418
BspANI	GGCC	2 cut(s)	5, 592
BspCNI	CTCAG	5 cut(s)	166, 258, 343, 424, 604
BspLI	GGNNCC	5 cut(s)	102, 160, 522, 577, 618
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	59, 346
BspT107I	GGYRCC	3 cut(s)	158, 520, 616
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	30, 162, 384, 579
BssMI	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	3 cut(s)	30, 162, 579
Bst2UI	CCWGG	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	6 cut(s)	153, 266, 330, 432, 612, 639
BstF5I	GGATG	3 cut(s)	244, 276, 568
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	6 cut(s)	67, 197, 354, 403, 513, 535
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 602
BstNI	CCWGG	1 cut(s)	386
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	2 cut(s)	251, 484
BstX2I	RGATCY	3 cut(s)	194, 351, 510
BstYI	RGATCY	3 cut(s)	194, 351, 510
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	5, 592
BtsCI	GGATG	3 cut(s)	244, 276, 568
BtsIMutI	CAGTG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	594
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	318, 415, 576
Csp6I	GTAC	2 cut(s)	150, 159
CviAII	CATG	2 cut(s)	233, 557
CviJI	RGCY	8 cut(s)	5, 62, 101, 230, 339, 544, 592, 638
CviKI_1	RGCY	8 cut(s)	5, 62, 101, 230, 339, 544, 592, 638
CviQI	GTAC	2 cut(s)	150, 159
DdeI	CTNAG	6 cut(s)	153, 266, 330, 432, 612, 639
DpnI	GATC	6 cut(s)	66, 196, 353, 402, 512, 534
DpnII	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	3 cut(s)	30, 162, 579
Eco147I	AGGCCT	1 cut(s)	592
Eco47I	GGWCC	3 cut(s)	318, 415, 576
Eco81I	CCTNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	3 cut(s)	30, 162, 579
ErhI	CCWWGG	3 cut(s)	30, 162, 579
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	2 cut(s)	236, 560
FaiI	YATR	5 cut(s)	90, 234, 377, 548, 558
FaqI	GGGAC	2 cut(s)	589, 593
FatI	CATG	2 cut(s)	232, 556
Fnu4HI	GCNGC	2 cut(s)	60, 358
FokI	GGATG	3 cut(s)	251, 283, 575
Fsp4HI	GCNGC	2 cut(s)	60, 358
FspBI	CTAG	2 cut(s)	140, 336
FspI	TGCGCA	1 cut(s)	206
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	2 cut(s)	60, 358
HaeIII	GGCC	2 cut(s)	5, 592
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	236, 560
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	24, 136, 285
HphI	GGTGA	2 cut(s)	136, 280
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	4 cut(s)	10, 313, 499, 508
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	5 cut(s)	34, 73, 114, 451, 496
HpyCH4IV	ACGT	2 cut(s)	117, 298
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 602
HpyF3I	CTNAG	6 cut(s)	153, 266, 330, 432, 612, 639
HpySE526I	ACGT	2 cut(s)	117, 298
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	236, 560
HspAI	GCGC	1 cut(s)	205
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
LmnI	GCTCC	2 cut(s)	106, 635
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	140, 336
MaeII	ACGT	2 cut(s)	117, 298
MaeIII	GTNAC	2 cut(s)	142, 323
MalI	GATC	6 cut(s)	66, 196, 353, 402, 512, 534
MboI	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
MboII	GAAGA	7 cut(s)	25, 64, 103, 256, 484, 578, 611
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	3 cut(s)	194, 351, 510
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	109, 613
MnlI	CCTC	7 cut(s)	38, 261, 309, 489, 544, 582, 607
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	2 cut(s)	237, 561
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	211, 602
NdeII	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
NlaIII	CATG	2 cut(s)	236, 560
NlaIV	GGNNCC	5 cut(s)	102, 160, 522, 577, 618
NmuCI	GTSAC	1 cut(s)	142
NsbI	TGCGCA	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	24, 285
PkrI	GCNGC	2 cut(s)	61, 359
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	318
PshAI	GACNNNNGTC	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	5 cut(s)	102, 160, 522, 577, 618
PspPI	GGNCC	3 cut(s)	318, 415, 576
PspPPI	RGGWCCY	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	3 cut(s)	194, 351, 510
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	151, 160
RsaNI	GTAC	2 cut(s)	150, 159
RseI	CAYNNNNRTG	2 cut(s)	237, 561
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	60, 358
Sau3AI	GATC	6 cut(s)	64, 194, 351, 400, 510, 532
Sau96I	GGNCC	3 cut(s)	318, 415, 576
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	386
SfaNI	GCATC	1 cut(s)	480
SinI	GGWCC	3 cut(s)	318, 415, 576
SmiMI	CAYNNNNRTG	2 cut(s)	237, 561
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	621
SseBI	AGGCCT	1 cut(s)	592
SsiI	CCGC	3 cut(s)	355, 358, 418
SspMI	CTAG	2 cut(s)	140, 336
StuI	AGGCCT	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	3 cut(s)	30, 162, 579
TaiI	ACGT	2 cut(s)	120, 301
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	1 cut(s)	621
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	24, 285
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	185, 415, 484, 545, 579
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	3 cut(s)	318, 415, 576
XspI	CTAG	2 cut(s)	140, 336
ZraI	GACGTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.