Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Forward (+)

16548600 .. 16550549

Gene Structure 1950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGCTGTTGATCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGATCTACAAAATGATGAGGATAATGCCTACAGGAAGATCCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCAGTTCTGGGGTATGGATTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGACTTTGATTGAAGCCCATGTCGATGTGAAAACCACAGACGGCTACACCTTGAGGATGTTCTGCATCGCCTTCACAAAGAGACGTGCTAACCAAGTGAAGCGTACCTGTTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTTGTGACCTCAAGGAGCTAGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGAAGGCAACACAGGGCATCTACCCGTTGCAGAATGTGTTCATCCGTAAAGTGAAGATCCTAAAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAGACAATGGTTGAGGAGCCAACAGAAATCATCGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

262

Amino Acids

29.8

Weight (kDa)

9.75

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	16 - 221	1.6e-83	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	1 cut(s)	493
AclWI	GGATC	4 cut(s)	59, 244, 484, 643
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	160, 457
AfiI	CCNNNNNNNGG	2 cut(s)	300, 301
AgsI	TTSAA	2 cut(s)	30, 365
AjiI	CACGTC	2 cut(s)	94, 437
AjnI	CCWGG	2 cut(s)	103, 146
AluBI	AGCT	6 cut(s)	263, 328, 550, 682, 743, 785
AluI	AGCT	6 cut(s)	263, 328, 550, 682, 743, 785
Alw26I	GTCTC	2 cut(s)	427, 743
AlwI	GGATC	4 cut(s)	59, 244, 484, 643
AoxI	GGCC	3 cut(s)	555, 573, 737
Asp700I	GAANNNNTTC	2 cut(s)	270, 629
Asp718I	GGTACC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	352, 529
BalI	TGGCCA	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	105, 148
BcoDI	GTCTC	2 cut(s)	427, 743
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	105, 148
BmgBI	CACGTC	2 cut(s)	94, 437
BmiI	GGNNCC	4 cut(s)	102, 160, 660, 765
BmrFI	CCNGG	2 cut(s)	105, 148
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	2 cut(s)	426, 618
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	424, 527
BsaJI	CCNNGG	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 301
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	105, 148
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	4 cut(s)	414, 564, 633, 721
BseLI	CCNNNNNNNGG	2 cut(s)	300, 301
BseMII	CTCAG	2 cut(s)	165, 167
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	776
BshFI	GGCC	3 cut(s)	557, 575, 739
BshNI	GGYRCC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	300, 301
BsmAI	GTCTC	2 cut(s)	427, 743
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	557, 575, 739
Bsp143I	GATC	5 cut(s)	64, 214, 249, 489, 648
BspACI	CCGC	1 cut(s)	493
BspANI	GGCC	3 cut(s)	557, 575, 739
BspCNI	CTCAG	2 cut(s)	166, 166
BspLI	GGNNCC	4 cut(s)	102, 160, 660, 765
BspPI	GGATC	4 cut(s)	59, 244, 484, 643
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	5 cut(s)	64, 214, 249, 489, 648
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	2 cut(s)	105, 148
Bst6I	CTCTTC	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	5 cut(s)	153, 174, 257, 329, 786
BstF5I	GGATG	4 cut(s)	414, 564, 633, 721
BstKTI	GATC	5 cut(s)	67, 217, 252, 492, 651
BstMAI	GTCTC	2 cut(s)	427, 743
BstMBI	GATC	5 cut(s)	64, 214, 249, 489, 648
BstNI	CCWGG	2 cut(s)	105, 148
BstSCI	CCNGG	2 cut(s)	103, 146
BstSFI	CTRYAG	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	3 cut(s)	249, 489, 648
BstYI	RGATCY	3 cut(s)	249, 489, 648
BsuRI	GGCC	3 cut(s)	557, 575, 739
BtgZI	GCGATG	1 cut(s)	403
BtrI	CACGTC	2 cut(s)	94, 437
BtsCI	GGATG	4 cut(s)	414, 564, 633, 721
Cac8I	GCNNGC	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	159, 456
CviAII	CATG	3 cut(s)	371, 685, 695
CviQI	GTAC	2 cut(s)	159, 456
DdeI	CTNAG	5 cut(s)	153, 174, 257, 329, 786
DpnI	GATC	5 cut(s)	66, 216, 251, 491, 650
DpnII	GATC	5 cut(s)	64, 214, 249, 489, 648
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	103, 146
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	3 cut(s)	374, 688, 698
FaiI	YATR	6 cut(s)	90, 308, 372, 515, 686, 696
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	370, 684, 694
FblI	GTMKAC	1 cut(s)	732
FokI	GGATG	4 cut(s)	421, 551, 620, 728
FspBI	CTAG	1 cut(s)	551
HaeIII	GGCC	3 cut(s)	557, 575, 739
Hin1II	CATG	3 cut(s)	374, 688, 698
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	136, 151
HphI	GGTGA	2 cut(s)	352, 529
Hpy166II	GTNNAC	2 cut(s)	291, 733
Hpy188I	TCNGA	3 cut(s)	175, 489, 782
Hpy188III	TCNNGA	2 cut(s)	10, 115
Hpy8I	GTNNAC	2 cut(s)	291, 733
HpyAV	CCTTC	9 cut(s)	49, 73, 79, 91, 273, 433, 514, 589, 721
HpyCH4IV	ACGT	2 cut(s)	93, 436
HpyCH4V	TGCA	3 cut(s)	417, 622, 694
HpyF3I	CTNAG	5 cut(s)	153, 174, 257, 329, 786
HpySE526I	ACGT	2 cut(s)	93, 436
Hsp92II	CATG	3 cut(s)	374, 688, 698
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	5 cut(s)	64, 214, 249, 489, 648
LmnI	GCTCC	5 cut(s)	106, 547, 664, 763, 782
LweI	GCATC	2 cut(s)	426, 618
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	2 cut(s)	93, 436
MaeIII	GTNAC	2 cut(s)	461, 536
MalI	GATC	5 cut(s)	66, 216, 251, 491, 650
MboI	GATC	5 cut(s)	64, 214, 249, 489, 648
MboII	GAAGA	8 cut(s)	25, 64, 145, 259, 278, 355, 594, 658
MflI	RGATCY	3 cut(s)	249, 489, 648
MlsI	TGGCCA	1 cut(s)	557
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	130, 145
Mox20I	TGGCCA	1 cut(s)	557
MroXI	GAANNNNTTC	2 cut(s)	270, 629
MscI	TGGCCA	1 cut(s)	557
MslI	CAYNNNNRTG	2 cut(s)	375, 689
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	743
MspR9I	CCNGG	2 cut(s)	105, 148
MvaI	CCWGG	2 cut(s)	105, 148
NdeII	GATC	5 cut(s)	64, 214, 249, 489, 648
NlaIII	CATG	3 cut(s)	374, 688, 698
NlaIV	GGNNCC	4 cut(s)	102, 160, 660, 765
NmuCI	GTSAC	1 cut(s)	536
PdmI	GAANNNNTTC	2 cut(s)	270, 629
PfoI	TCCNGGA	1 cut(s)	146
PleI	GAGTC	2 cut(s)	130, 145
PpsI	GAGTC	2 cut(s)	130, 145
Psp6I	CCWGG	2 cut(s)	103, 146
PspGI	CCWGG	2 cut(s)	103, 146
PspN4I	GGNNCC	4 cut(s)	102, 160, 660, 765
PsuI	RGATCY	3 cut(s)	249, 489, 648
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	160, 457
RsaNI	GTAC	2 cut(s)	159, 456
RseI	CAYNNNNRTG	2 cut(s)	375, 689
Sau3AI	GATC	5 cut(s)	64, 214, 249, 489, 648
SchI	GAGTC	2 cut(s)	130, 145
ScrFI	CCNGG	2 cut(s)	105, 148
SfaNI	GCATC	2 cut(s)	426, 618
SfcI	CTRYAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	375, 689
SmlI	CTYRAG	2 cut(s)	403, 542
SmoI	CTYRAG	2 cut(s)	403, 542
SsiI	CCGC	1 cut(s)	493
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	103, 146
StyI	CCWWGG	1 cut(s)	673
TaiI	ACGT	2 cut(s)	96, 439
TaqI	TCGA	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	519, 553, 622
TspGWI	ACGGA	3 cut(s)	242, 473, 626
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	2 cut(s)	270, 629
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.