Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006510.1

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

53826 .. 56523

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006510.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggaaaacacagaagcgacgacggcggagaagtggagaaccaaaacgacatcgttgacatttgacaagttgaagatggaggatcttgaagatgacaaggatcttgaggtcctcactatctccaggcgcttccctaaacacagaatgtcacttcttcttcttcttctcgttaccaaaaccctagccaccgctcctctcacaatcatggccgtcggcaagaacaagcgcatttcgaaggggaagaagactgggaagaagaaggcagctgacccttttgcgaagaaggattggtatgatatcaaggcacctaatctcttccatgtgaggcaggtcggcaaaaccctcgtcaccagaactcagggaactaagattgcttctgaaggactcaaacatcgagtgttcgaggtttctctggctgatctccagaaggatgaggatcatgcttacagaaagatccgtctaagagcagaggatgtgcaagggaaggatgtactcacaaacttctgggtgtggcaccgttttgctgctgtcaatgtttcaatagcaaatatgattgggatggatttcgccactgacaagctgaggtcattggtccgaaagtggcagacactgattgaggctcatgtggatgtaaagactaccgataactatactcttaggatgttctgtattgcgtttaccaagaggcgccaaaatcaggtcaagcgtacctgctatgctcaatccagtcagatttgtcagattcgccgcaagatgagagaaattatggtaaaccaggcttcagcctgtgatctgaaggagttggtgcaaaaattcattcccgagatgattggcagagagattgaaaaggctacatccagcatctacccactgcagaatgttttcattcgaaaagtcaagctattgaaagctcccaagttcgatcttggcaagttgatggaggttcatgagaaaaaagaggatgttggtgtgaaaattgagagaccagctgaagaaatggtgcccgaggagaccaccattgttggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

343

Amino Acids

39.55

Weight (kDa)

9.75

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	319, 719
AccB1I	GGYRCC	4 cut(s)	304, 513, 687, 1000
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	3 cut(s)	26, 189, 748
AclWI	GGATC	4 cut(s)	90, 108, 444, 448
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	4 cut(s)	399, 765, 815, 1011
AcyI	GRCGYC	1 cut(s)	688
AfaI	GTAC	2 cut(s)	492, 709
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	5 cut(s)	73, 89, 540, 845, 907
AjnI	CCWGG	2 cut(s)	122, 774
AluBI	AGCT	5 cut(s)	266, 580, 901, 911, 989
AluI	AGCT	5 cut(s)	266, 580, 901, 911, 989
Alw26I	GTCTC	2 cut(s)	976, 1004
AlwI	GGATC	4 cut(s)	90, 108, 444, 448
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	2 cut(s)	821, 1004
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	263, 524
ApoI	RAATTY	1 cut(s)	812
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
Asp700I	GAANNNNTTC	1 cut(s)	881
AspLEI	GCGC	3 cut(s)	129, 228, 690
AspS9I	GGNCC	2 cut(s)	109, 592
AsuHPI	GGTGA	1 cut(s)	340
AsuII	TTCGAA	2 cut(s)	233, 889
AvaI	CYCGRG	2 cut(s)	821, 1004
AvaII	GGWCC	2 cut(s)	109, 592
BaeGI	GKGCMC	1 cut(s)	1005
BanI	GGYRCC	4 cut(s)	304, 513, 687, 1000
BbsI	GAAGAC	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	275, 511
BccI	CCATC	3 cut(s)	70, 553, 931
BceAI	ACGGC	2 cut(s)	39, 194
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	124, 776
BcoDI	GTCTC	2 cut(s)	976, 1004
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	872
BfoI	RGCGCY	2 cut(s)	130, 691
BfuAI	ACCTGC	2 cut(s)	319, 719
BisI	GCNGC	3 cut(s)	264, 525, 748
BlsI	GCNGC	3 cut(s)	265, 526, 749
Bme1390I	CCNGG	2 cut(s)	124, 776
Bme18I	GGWCC	2 cut(s)	109, 592
BmeT110I	CYCGRG	2 cut(s)	821, 1004
BmgT120I	GGNCC	2 cut(s)	109, 592
BmiI	GGNNCC	4 cut(s)	306, 515, 689, 1002
BmrFI	CCNGG	2 cut(s)	124, 776
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	870
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	2 cut(s)	106, 407
Bpu10I	CCTNAGC	1 cut(s)	581
Bpu14I	TTCGAA	2 cut(s)	233, 889
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	688
BsaI	GGTCTC	2 cut(s)	976, 1004
BsaJI	CCNNGG	1 cut(s)	1005
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	253, 726
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	124, 776
BseDI	CCNNGG	1 cut(s)	1005
BseGI	GGATG	8 cut(s)	436, 478, 493, 564, 634, 666, 854, 967
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMII	CTCAG	2 cut(s)	371, 572
BseNI	ACTGG	2 cut(s)	253, 726
BseRI	GAGGAG	2 cut(s)	183, 1022
BseSI	GKGCMC	1 cut(s)	1005
BseXI	GCAGC	2 cut(s)	275, 511
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	4 cut(s)	304, 513, 687, 1000
BsiHKCI	CYCGRG	2 cut(s)	821, 1004
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	976, 1004
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	2 cut(s)	976, 1004
BsoBI	CYCGRG	2 cut(s)	821, 1004
Bsp119I	TTCGAA	2 cut(s)	233, 889
Bsp1286I	GDGCHC	1 cut(s)	1005
Bsp143I	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
BspACI	CCGC	3 cut(s)	26, 189, 748
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	370, 573
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	4 cut(s)	306, 515, 689, 1002
BspMAI	CTGCAG	1 cut(s)	876
BspMI	ACCTGC	2 cut(s)	319, 719
BspPI	GGATC	4 cut(s)	90, 108, 444, 448
BspT104I	TTCGAA	2 cut(s)	233, 889
BspT107I	GGYRCC	4 cut(s)	304, 513, 687, 1000
BspTNI	GGTCTC	2 cut(s)	976, 1004
BsrBI	CCGCTC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	253, 726
BssECI	CCNNGG	1 cut(s)	1005
BssMI	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
BssNI	GRCGYC	1 cut(s)	688
Bst2UI	CCWGG	2 cut(s)	124, 776
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	688
BstBI	TTCGAA	2 cut(s)	233, 889
BstDEI	CTNAG	5 cut(s)	357, 366, 461, 581, 656
BstF5I	GGATG	8 cut(s)	436, 478, 493, 564, 634, 666, 854, 967
BstH2I	RGCGCY	2 cut(s)	130, 691
BstHHI	GCGC	3 cut(s)	129, 228, 690
BstKTI	GATC	7 cut(s)	85, 103, 421, 439, 456, 793, 925
BstMAI	GTCTC	2 cut(s)	976, 1004
BstMBI	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	124, 776
BstSCI	CCNGG	2 cut(s)	122, 774
BstSFI	CTRYAG	1 cut(s)	872
BstSLI	GKGCMC	1 cut(s)	1005
BstV1I	GCAGC	2 cut(s)	275, 511
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	3 cut(s)	82, 100, 453
BstYI	RGATCY	3 cut(s)	82, 100, 453
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	8 cut(s)	436, 478, 493, 564, 634, 666, 854, 967
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	3 cut(s)	570, 608, 869
BveI	ACCTGC	2 cut(s)	319, 719
CaiI	CAGNNNCTG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	946
CfoI	GCGC	3 cut(s)	129, 228, 690
Cfr13I	GGNCC	2 cut(s)	109, 592
Csp6I	GTAC	2 cut(s)	491, 708
CspCI	CAANNNNNGTGG	1 cut(s)	1003
CviAII	CATG	6 cut(s)	205, 320, 440, 623, 947, 1029
CviQI	GTAC	2 cut(s)	491, 708
DdeI	CTNAG	5 cut(s)	357, 366, 461, 581, 656
DinI	GGCGCC	1 cut(s)	689
DpnI	GATC	7 cut(s)	84, 102, 420, 438, 455, 792, 924
DpnII	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	976, 1004
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	109, 592
Eco57I	CTGAAG	4 cut(s)	399, 765, 815, 1011
Eco88I	CYCGRG	2 cut(s)	821, 1004
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	122, 774
EcoRV	GATATC	1 cut(s)	298
EgeI	GGCGCC	1 cut(s)	689
EheI	GGCGCC	1 cut(s)	689
FaeI	CATG	6 cut(s)	208, 323, 443, 626, 950, 1032
FatI	CATG	6 cut(s)	204, 319, 439, 622, 946, 1028
Fnu4HI	GCNGC	3 cut(s)	264, 525, 748
FokI	GGATG	8 cut(s)	443, 485, 500, 571, 641, 673, 841, 974
Fsp4HI	GCNGC	3 cut(s)	264, 525, 748
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	3 cut(s)	128, 227, 689
GluI	GCNGC	3 cut(s)	264, 525, 748
GsuI	CTGGAG	2 cut(s)	106, 407
HaeII	RGCGCY	2 cut(s)	130, 691
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	3 cut(s)	129, 228, 690
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	6 cut(s)	208, 323, 443, 626, 950, 1032
Hin6I	GCGC	3 cut(s)	127, 226, 688
HinP1I	GCGC	3 cut(s)	127, 226, 688
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	384, 742
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	57, 678, 772
Hpy188I	TCNGA	5 cut(s)	379, 596, 732, 741, 795
Hpy188III	TCNNGA	5 cut(s)	86, 104, 424, 821, 947
Hpy8I	GTNNAC	3 cut(s)	57, 678, 772
Hpy99I	CGWCG	3 cut(s)	22, 25, 215
HpyAV	CCTTC	7 cut(s)	229, 253, 277, 374, 421, 478, 790
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	3 cut(s)	478, 808, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	5 cut(s)	357, 366, 461, 581, 656
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	6 cut(s)	208, 323, 443, 626, 950, 1032
HspAI	GCGC	3 cut(s)	127, 226, 688
KasI	GGCGCC	1 cut(s)	687
Kzo9I	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
LmnI	GCTCC	3 cut(s)	196, 916, 1025
Lsp1109I	GCAGC	2 cut(s)	275, 511
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	3 cut(s)	147, 169, 346
MalI	GATC	7 cut(s)	84, 102, 420, 438, 455, 792, 924
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
MflI	RGATCY	3 cut(s)	82, 100, 453
MhlI	GDGCHC	1 cut(s)	1005
MluCI	AATT	3 cut(s)	762, 812, 975
Mly113I	GGCGCC	1 cut(s)	688
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	1003
MroXI	GAANNNNTTC	1 cut(s)	881
MslI	CAYNNNNRTG	2 cut(s)	203, 627
MspA1I	CMGCKG	2 cut(s)	266, 989
MspR9I	CCNGG	2 cut(s)	124, 776
MvaI	CCWGG	2 cut(s)	124, 776
MwoI	GCNNNNNNNGC	1 cut(s)	23
NarI	GGCGCC	1 cut(s)	688
NdeII	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
NlaIII	CATG	6 cut(s)	208, 323, 443, 626, 950, 1032
NlaIV	GGNNCC	4 cut(s)	306, 515, 689, 1002
NmuCI	GTSAC	2 cut(s)	147, 346
NspV	TTCGAA	2 cut(s)	233, 889
PagI	TCATGA	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	881
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	265, 526, 749
PleI	GAGTC	1 cut(s)	378
PluTI	GGCGCC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	378
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	122, 774
PspGI	CCWGG	2 cut(s)	122, 774
PspN4I	GGNNCC	4 cut(s)	306, 515, 689, 1002
PspPI	GGNCC	2 cut(s)	109, 592
PspPPI	RGGWCCY	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	3 cut(s)	82, 100, 453
PvuII	CAGCTG	2 cut(s)	266, 989
RsaI	GTAC	2 cut(s)	492, 709
RsaNI	GTAC	2 cut(s)	491, 708
RseI	CAYNNNNRTG	2 cut(s)	203, 627
SatI	GCNGC	3 cut(s)	264, 525, 748
Sau3AI	GATC	7 cut(s)	82, 100, 418, 436, 453, 790, 922
Sau96I	GGNCC	2 cut(s)	109, 592
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	124, 776
SduI	GDGCHC	1 cut(s)	1005
SfaNI	GCATC	1 cut(s)	870
SfcI	CTRYAG	1 cut(s)	872
SfoI	GGCGCC	1 cut(s)	689
SfuI	TTCGAA	2 cut(s)	233, 889
SinI	GGWCC	2 cut(s)	109, 592
SmiMI	CAYNNNNRTG	2 cut(s)	203, 627
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	762, 812, 975
SsiI	CCGC	3 cut(s)	26, 189, 748
SspDI	GGCGCC	1 cut(s)	687
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	122, 774
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	5 cut(s)	233, 394, 402, 889, 921
TasI	AATT	3 cut(s)	762, 812, 975
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	1 cut(s)	742
TscAI	CASTG	3 cut(s)	577, 615, 876
TseFI	GTSAC	2 cut(s)	147, 346
TseI	GCWGC	2 cut(s)	263, 524
Tsp45I	GTSAC	2 cut(s)	147, 346
TspDTI	ATGAA	3 cut(s)	805, 874, 935
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	3 cut(s)	577, 615, 876
VpaK11BI	GGWCC	2 cut(s)	109, 592
XapI	RAATTY	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	881
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.