Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

29442031 .. 29444410

Gene Structure 2380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCGTCGGTAAGAACAAGAGGATTTCGAAGGGTAAGAAGGGTGGGAAGAAGAAGGCAGCTGACCCATTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCTTCTCTCTTCACAGAAAGGCAGATTGGCAAAACCCTCGTCTCCAGAACTCAGGGCACTAAGATTGCTTCTGAAGGACTCAAGCATCGAGTGTTTGAGGTTTCTCTGGCTGATCTCCAGAAGGATGAGGAGCATGCTTACAGGAAGATCCGGCTAAGAGCGGAGGATGTGCAAGGGAGGAACGTACTCACTAACTTCTGGGGAATGGATTTCACCACCGACAAGCTGAGGTCGTTAGTGAGGAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTAAAGACTACTGATAACTACACCCTTAGGATGTTTTGCATTGCATTTACCAAGAGGCGTACAAACCAGGTCAAGCGAACCTGTTATGCCCAATCCAGTCAGATTCGTCAGATTCGACTCAAGATGAGGGAAATCATGATAAACCAGGCTGCATCCTGTGATCTGAAGGACTTGGTGGCAAAATTTATTCCTGAGAGTATTGGCAGGGAAATTGAAAAGGCAACATCCAGCATCTACCCACTGCAGAATGTTTTCATTCGAAAAGTCAAGATCTTGAAAGCTCCCAAATTTGATCTTCCCAAATTGATGGAGGTTCATGGCGGAAAAGAGGACGTCGGTGTGAAGGTGGACAGATCAGCTGAAGAAACAGCGCCTGAGGGAGAGACCGAAGTTGTCGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

261

Amino Acids

29.67

Weight (kDa)

9.85

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	714
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	2 cut(s)	263, 699
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	560, 665
AcuI	CTGAAG	3 cut(s)	195, 563, 759
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	2 cut(s)	288, 439
AgsI	TTSAA	2 cut(s)	593, 655
AjnI	CCWGG	2 cut(s)	444, 522
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	62, 328, 659, 737
AluI	AGCT	4 cut(s)	62, 328, 659, 737
Alw26I	GTCTC	2 cut(s)	148, 755
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	358, 752
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	59, 527
ApoI	RAATTY	2 cut(s)	560, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	751
AsuHPI	GGTGA	1 cut(s)	307
AsuII	TTCGAA	2 cut(s)	29, 637
AxyI	CCTNAGG	2 cut(s)	404, 753
BaeGI	GKGCMC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	71, 514
BccI	CCATC	1 cut(s)	679
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	2 cut(s)	446, 524
BcoDI	GTCTC	2 cut(s)	148, 755
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	752
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	2 cut(s)	60, 528
BlsI	GCNGC	2 cut(s)	61, 529
Bme1390I	CCNGG	2 cut(s)	446, 524
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	446, 524
BmsI	GCATC	3 cut(s)	196, 539, 618
BpmI	CTGGAG	2 cut(s)	130, 203
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu14I	TTCGAA	2 cut(s)	29, 637
BpuEI	CTTGAG	2 cut(s)	167, 482
BsaHI	GRCGYC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	755
Bse1I	ACTGG	2 cut(s)	89, 474
Bse21I	CCTNAGG	2 cut(s)	404, 753
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	446, 524
BseGI	GGATG	6 cut(s)	232, 274, 382, 414, 530, 602
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	4 cut(s)	167, 320, 561, 744
BseNI	ACTGG	2 cut(s)	89, 474
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	71, 514
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	148, 755
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	755
Bsp119I	TTCGAA	2 cut(s)	29, 637
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
BspACI	CCGC	2 cut(s)	263, 699
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	166, 321, 562, 745
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	624
BspPI	GGATC	1 cut(s)	244
BspT104I	TTCGAA	2 cut(s)	29, 637
BspTNI	GGTCTC	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	89, 474
BssMI	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
BssNI	GRCGYC	1 cut(s)	711
Bst2UI	CCWGG	2 cut(s)	446, 524
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	711
BstBI	TTCGAA	2 cut(s)	29, 637
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	7 cut(s)	153, 162, 257, 329, 404, 570, 753
BstF5I	GGATG	6 cut(s)	232, 274, 382, 414, 530, 602
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	6 cut(s)	217, 252, 541, 651, 673, 734
BstMAI	GTCTC	2 cut(s)	148, 755
BstMBI	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
BstNI	CCWGG	2 cut(s)	446, 524
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	444, 522
BstSFI	CTRYAG	1 cut(s)	620
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	71, 514
BstX2I	RGATCY	2 cut(s)	249, 648
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	2 cut(s)	249, 648
Bsu36I	CCTNAGG	2 cut(s)	404, 753
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	6 cut(s)	232, 274, 382, 414, 530, 602
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	2 cut(s)	356, 617
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	2 cut(s)	358, 752
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	1 cut(s)	751
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	287, 438
CviAII	CATG	4 cut(s)	236, 371, 514, 695
CviQI	GTAC	2 cut(s)	287, 438
DdeI	CTNAG	7 cut(s)	153, 162, 257, 329, 404, 570, 753
DpnI	GATC	6 cut(s)	216, 251, 540, 650, 672, 733
DpnII	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	755
Eco32I	GATATC	1 cut(s)	94
Eco57I	CTGAAG	3 cut(s)	195, 563, 759
Eco81I	CCTNAGG	2 cut(s)	404, 753
EcoRII	CCWGG	2 cut(s)	444, 522
EcoRV	GATATC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	4 cut(s)	239, 374, 517, 698
FaiI	YATR	7 cut(s)	90, 237, 372, 465, 515, 696, 781
FatI	CATG	4 cut(s)	235, 370, 513, 694
Fnu4HI	GCNGC	2 cut(s)	60, 528
FokI	GGATG	6 cut(s)	239, 281, 389, 421, 517, 589
Fsp4HI	GCNGC	2 cut(s)	60, 528
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	2 cut(s)	60, 528
GsuI	CTGGAG	2 cut(s)	130, 203
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	253
HhaI	GCGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	4 cut(s)	239, 374, 517, 698
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HinfI	GANTC	4 cut(s)	180, 481, 490, 495
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	5 cut(s)	175, 480, 489, 543, 776
Hpy188III	TCNNGA	7 cut(s)	147, 220, 499, 514, 569, 646, 652
Hpy8I	GTNNAC	1 cut(s)	727
Hpy99I	CGWCG	2 cut(s)	11, 716
HpyAV	CCTTC	9 cut(s)	25, 34, 49, 73, 114, 170, 217, 538, 715
HpyCH4IV	ACGT	2 cut(s)	285, 711
HpyCH4V	TGCA	5 cut(s)	274, 417, 422, 530, 622
HpyF3I	CTNAG	7 cut(s)	153, 162, 257, 329, 404, 570, 753
HpySE526I	ACGT	2 cut(s)	285, 711
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	4 cut(s)	239, 374, 517, 698
HspAI	GCGC	1 cut(s)	749
Kzo9I	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
LmnI	GCTCC	3 cut(s)	106, 232, 664
Lsp1109I	GCAGC	2 cut(s)	71, 514
LweI	GCATC	3 cut(s)	196, 539, 618
MabI	ACCWGGT	1 cut(s)	444
MaeII	ACGT	2 cut(s)	285, 711
MalI	GATC	6 cut(s)	216, 251, 540, 650, 672, 733
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
MboII	GAAGA	6 cut(s)	61, 64, 103, 259, 665, 752
MflI	RGATCY	2 cut(s)	249, 648
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	4 cut(s)	560, 588, 665, 680
MlyI	GAGTC	2 cut(s)	174, 489
MmeI	TCCRAC	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	629
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	62, 737
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	446, 524
MvaI	CCWGG	2 cut(s)	446, 524
NdeII	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
NlaIII	CATG	4 cut(s)	239, 374, 517, 698
NlaIV	GGNNCC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	2 cut(s)	29, 637
PaeI	GCATGC	1 cut(s)	239
PagI	TCATGA	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	481, 490
PkrI	GCNGC	2 cut(s)	61, 529
PleI	GAGTC	2 cut(s)	174, 489
PpsI	GAGTC	2 cut(s)	174, 489
Psp6I	CCWGG	2 cut(s)	444, 522
PspGI	CCWGG	2 cut(s)	444, 522
PspN4I	GGNNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	624
PstNI	CAGNNNCTG	2 cut(s)	358, 752
PsuI	RGATCY	2 cut(s)	249, 648
PvuII	CAGCTG	2 cut(s)	62, 737
RsaI	GTAC	2 cut(s)	288, 439
RsaNI	GTAC	2 cut(s)	287, 438
RseI	CAYNNNNRTG	1 cut(s)	375
SatI	GCNGC	2 cut(s)	60, 528
Sau3AI	GATC	6 cut(s)	214, 249, 538, 648, 670, 731
SchI	GAGTC	2 cut(s)	174, 489
ScrFI	CCNGG	2 cut(s)	446, 524
SduI	GDGCHC	1 cut(s)	161
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	3 cut(s)	196, 539, 618
SfcI	CTRYAG	1 cut(s)	620
SfuI	TTCGAA	2 cut(s)	29, 637
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	182, 497
SmoI	CTYRAG	2 cut(s)	182, 497
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	4 cut(s)	560, 588, 665, 680
SsiI	CCGC	2 cut(s)	263, 699
StyD4I	CCNGG	2 cut(s)	444, 522
TaiI	ACGT	2 cut(s)	288, 714
TaqI	TCGA	4 cut(s)	29, 190, 493, 637
TaqII	GACCGA	1 cut(s)	779
TasI	AATT	4 cut(s)	560, 588, 665, 680
TfiI	GAWTC	2 cut(s)	481, 490
TscAI	CASTG	2 cut(s)	363, 624
TseI	GCWGC	2 cut(s)	59, 527
TspDTI	ATGAA	2 cut(s)	622, 683
TspRI	CASTG	2 cut(s)	363, 624
XapI	RAATTY	2 cut(s)	560, 665
XceI	RCATGY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	629
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.