Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

47293112 .. 47294776

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCCGTCGGCAAGAACAAGCGGATTTCGAAGGGGAAGAAGGCTGGGAAAAAGAAGGCAGCTGACCCTTTTGCGAAGAAGGATTGGTATGATATCAAGGCACCTAATCTCTTCCATGTGAGGCAGGTTGGCAAAACCCTCGTCACCAGAACTCAGGGAACTAAGGATGTGCAAGGGAAGGATGTACTAACAAACTTCTGGGGGATAGATTTCACCACTGACAAGCTGAGGTCATTGGTCCGAAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTAAAGACTACCGATAACTATACCCTTAGGATGTTCTGTATTGCTTTTACCAAGAGACGCGCAAATCAGGTCAAGCGTACCTGCTATGCTCAATCCAGTCAGATTCGTCAGATTCGCCGCAAGATGAGAGAAATTATGGTAAACCAAGCTTCAGCCTGTGATCTGAAGGAGTTGGTGCAAAAATTCATTCCTGAGATGATTGGTAGAGAGATTGAAAAGGCTACATCCAGCATCTACCCACTGCAGAATGTTTTCATTCGAAAAGTCAAGATCTTGAAAGCTCCCAAATTCGATCTTGGCAAGTTGATGGAGGTTCATGAGAAAAAAGAGGATGTTGGTGTGAAAATTGAGAGACCAGCTGAAGAAATTGTGCCCGAGGAGACCACCATTGTTGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

226

Amino Acids

25.88

Weight (kDa)

9.98

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	16 - 53	1.5e-09	Ribosomal S3Ae family
Ribosomal_S3Ae	PF01015	55 - 187	2e-52	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	115, 365
AccB1I	GGYRCC	1 cut(s)	100
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	22, 394
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	458, 563
AcuI	CTGAAG	3 cut(s)	411, 461, 657
AfaI	GTAC	2 cut(s)	186, 355
AgsI	TTSAA	2 cut(s)	491, 553
AluBI	AGCT	5 cut(s)	62, 226, 425, 557, 635
AluI	AGCT	5 cut(s)	62, 226, 425, 557, 635
Alw26I	GTCTC	3 cut(s)	325, 622, 650
AlwNI	CAGNNNCTG	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	458, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	136, 205
AsuII	TTCGAA	2 cut(s)	29, 535
AvaI	CYCGRG	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	577
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BcoDI	GTCTC	3 cut(s)	325, 622, 650
BfmI	CTRYAG	1 cut(s)	518
BfuAI	ACCTGC	2 cut(s)	115, 365
BglII	AGATCT	1 cut(s)	546
BisI	GCNGC	2 cut(s)	60, 394
BlsI	GCNGC	2 cut(s)	61, 395
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	227
Bpu14I	TTCGAA	2 cut(s)	29, 535
BsaI	GGTCTC	2 cut(s)	622, 650
BsaJI	CCNNGG	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	372
Bse21I	CCTNAGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	6 cut(s)	172, 187, 280, 312, 500, 613
BseMII	CTCAG	3 cut(s)	167, 218, 459
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	650
BsmAI	GTCTC	3 cut(s)	325, 622, 650
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	622, 650
BsoBI	CYCGRG	1 cut(s)	650
Bsp119I	TTCGAA	2 cut(s)	29, 535
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	3 cut(s)	436, 546, 568
BspACI	CCGC	2 cut(s)	22, 394
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	166, 219, 460
BspFNI	CGCG	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	522
BspMI	ACCTGC	2 cut(s)	115, 365
BspT104I	TTCGAA	2 cut(s)	29, 535
BspT107I	GGYRCC	1 cut(s)	100
BspTNI	GGTCTC	2 cut(s)	622, 650
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	3 cut(s)	436, 546, 568
Bst6I	CTCTTC	1 cut(s)	116
BstBI	TTCGAA	2 cut(s)	29, 535
BstDEI	CTNAG	5 cut(s)	153, 162, 227, 302, 468
BstF5I	GGATG	6 cut(s)	172, 187, 280, 312, 500, 613
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	439, 549, 571
BstMAI	GTCTC	3 cut(s)	325, 622, 650
BstMBI	GATC	3 cut(s)	436, 546, 568
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	6 cut(s)	172, 187, 280, 312, 500, 613
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	3 cut(s)	216, 254, 515
BveI	ACCTGC	2 cut(s)	115, 365
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	185, 354
CspCI	CAANNNNNGTGG	1 cut(s)	649
CviAII	CATG	4 cut(s)	116, 269, 593, 675
CviQI	GTAC	2 cut(s)	185, 354
DdeI	CTNAG	5 cut(s)	153, 162, 227, 302, 468
DpnI	GATC	3 cut(s)	438, 548, 570
DpnII	GATC	3 cut(s)	436, 546, 568
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco31I	GGTCTC	2 cut(s)	622, 650
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	3 cut(s)	411, 461, 657
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	650
EcoRV	GATATC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	4 cut(s)	119, 272, 596, 678
FaiI	YATR	8 cut(s)	90, 117, 270, 297, 363, 413, 594, 676
FatI	CATG	4 cut(s)	115, 268, 592, 674
Fnu4HI	GCNGC	2 cut(s)	60, 394
FokI	GGATG	6 cut(s)	179, 194, 287, 319, 487, 620
Fsp4HI	GCNGC	2 cut(s)	60, 394
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	2 cut(s)	60, 394
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	119, 272, 596, 678
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	379, 388
HphI	GGTGA	2 cut(s)	136, 205
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	242, 378, 387, 441
Hpy188III	TCNNGA	4 cut(s)	467, 544, 550, 593
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	25, 34, 49, 73, 172, 436
HpyCH4V	TGCA	3 cut(s)	172, 454, 520
HpyF3I	CTNAG	5 cut(s)	153, 162, 227, 302, 468
Hsp92II	CATG	4 cut(s)	119, 272, 596, 678
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	436, 546, 568
LmnI	GCTCC	2 cut(s)	562, 671
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	438, 548, 570
MboI	GATC	3 cut(s)	436, 546, 568
MboII	GAAGA	4 cut(s)	49, 88, 103, 650
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	5 cut(s)	408, 458, 563, 621, 642
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	7 cut(s)	114, 149, 222, 256, 580, 598, 646
MroXI	GAANNNNTTC	1 cut(s)	527
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	62, 635
MvnI	CGCG	1 cut(s)	336
NdeII	GATC	3 cut(s)	436, 546, 568
NlaIII	CATG	4 cut(s)	119, 272, 596, 678
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	142
NspV	TTCGAA	2 cut(s)	29, 535
PagI	TCATGA	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	379, 388
PkrI	GCNGC	2 cut(s)	61, 395
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	546
PvuII	CAGCTG	2 cut(s)	62, 635
RsaI	GTAC	2 cut(s)	186, 355
RsaNI	GTAC	2 cut(s)	185, 354
RseI	CAYNNNNRTG	1 cut(s)	273
SatI	GCNGC	2 cut(s)	60, 394
Sau3AI	GATC	3 cut(s)	436, 546, 568
Sau96I	GGNCC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	518
SfuI	TTCGAA	2 cut(s)	29, 535
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	5 cut(s)	408, 458, 563, 621, 642
SsiI	CCGC	2 cut(s)	22, 394
TaqI	TCGA	3 cut(s)	29, 535, 567
TasI	AATT	5 cut(s)	408, 458, 563, 621, 642
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	379, 388
TscAI	CASTG	3 cut(s)	223, 261, 522
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	451, 520, 581
TspRI	CASTG	3 cut(s)	223, 261, 522
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	2 cut(s)	458, 563
XmnI	GAANNNNTTC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.