Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0004695

Physical Location & Seq

Genomic Coordinates Reverse (-)

214263 .. 216936

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAAAACACAGAAGCGACGACGGCGGAGAACCAGAACGACGTCGTTGACAAGTTGAAGATGGAGGATCTTGAAGATGACACGGATCTTGAGGAACAATTTTGCAAAAATATGGTTGTGTTGAATGAATCGTTTTCCCTGTTTGTTGCGTCCTTTTCCGAGTCCTTTAGGACGCCCAAGAACAAGCGCATTTCGAAGGGGAAGAAGACTGGGAAGAAGAAGGCAGCTGACCCTTTTGCGAAGAAGGATTGGTATGATATCAAGGCACCTAATCTCTTCCATGTGAGGCAGGTCGGCAAAACCCTCGTCACCAGAACTCAGGGAACTAAGGGAATGGTTGAGGATGGGATAGATTTCACCACTGACAAGCTGAGGTCATTGGTCCGAAAGTGGCAGACACTGATTGAGGCTCATGTGGATGTAAAGACCACCGACAACTCTACCCTTAGGATGTTCTGTATTGCTTTTACCAAGAGACGCGTAAATCAGGTCAAGCGTACCTGCTATGCTCAATCCAGTCAGATTCGTCAGATTCGCCGCAAGATGAGAGAAATTATGGTAAACCAGGCTTCAGCCTGTGATCTGAAGGAGTTGGTGCAAAAATTCATTCCTGAGATGATTGGCAGAGAGATTGAAAAGGCTACGTCCAGCATCTACCCACTGCAGAATGTTTTCATTCGAAAAGTCAAGATCTTGAAAGCTCCCAAATTCGATCTTGGCAAGTTGATGGAGGTTCATGAGAAAAAAGAGGACGTTGGTGTGAAAATTGAGAGACCAGCTGAAGAAATTGTGCCCGAGGAGACCACCATTGTTAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03010 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03010

Pfam Domains

Protein Families

Ribosomal_S3Ae

Protein Analysis

273

Amino Acids

31.5

Weight (kDa)

9.32

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3Ae	PF01015	71 - 112	4.9e-10	Ribosomal S3Ae family
Ribosomal_S3Ae	PF01015	116 - 235	2.5e-44	Ribosomal S3Ae family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04840 AT4G34670
fragaria_vesca	FvH4_4g00850 FvH4_6g03341
malus_domestica	MD13G1198000.v1.1 MD16G1198000.v1.1
prunus_persica	Prupe.1G019500_v2.0.a1 Prupe.6G340700_v2.0.a1
pyrus_communis	pycom16g16690
rosa_chinensis	RchiOBHm_Chr3g0451851 RchiOBHm_Chr4g0387481
rosa_laevigata	RLG00000010119 RLG00000025643
rosa_multiflora	Rmu_sc0002901.1_g000009 Rmu_sc0006510.1_g000011 Rmu_sc0009161.1_g000004 Rmu_sc0011414.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436260 Rroxscaffold_5G00334160 Rroxscaffold_6G00429030
rosa_rugosa	Rorug02G0636600 Rorug03G0309800
rosa_samantha	Rh3AG038500 Rh3BG039800 Rh3CG038300 Rh3DG039100 Rh4BG010800 Rh4CG017300 Rh4DG012000
rosa_wichuraiana	Rw3G002870 Rw4G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	2 cut(s)	280, 509
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	1 cut(s)	480
AciI	CCGC	2 cut(s)	26, 538
AclWI	GGATC	2 cut(s)	75, 93
AcsI	RAATTY	2 cut(s)	602, 707
AcuI	CTGAAG	3 cut(s)	555, 605, 801
AcyI	GRCGYC	2 cut(s)	42, 173
AfaI	GTAC	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	58, 74, 124, 635, 697
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	4 cut(s)	227, 370, 701, 779
AluI	AGCT	4 cut(s)	227, 370, 701, 779
Alw26I	GTCTC	3 cut(s)	469, 766, 794
AlwI	GGATC	2 cut(s)	75, 93
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	794
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	602, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	301, 349
AsuII	TTCGAA	2 cut(s)	194, 679
AvaI	CYCGRG	1 cut(s)	794
AvaII	GGWCC	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	55, 338, 721
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	3 cut(s)	469, 766, 794
BfmI	CTRYAG	1 cut(s)	662
BfuAI	ACCTGC	2 cut(s)	280, 509
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	2 cut(s)	225, 538
BlsI	GCNGC	2 cut(s)	226, 539
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	566
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	660
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	2 cut(s)	194, 679
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	42, 173
BsaI	GGTCTC	2 cut(s)	766, 794
BsaJI	CCNNGG	1 cut(s)	795
Bse1I	ACTGG	2 cut(s)	214, 516
Bse21I	CCTNAGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	795
BseGI	GGATG	3 cut(s)	349, 424, 456
BseMII	CTCAG	3 cut(s)	332, 362, 603
BseNI	ACTGG	2 cut(s)	214, 516
BseRI	GAGGAG	1 cut(s)	812
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	469, 766, 794
BsmBI	CGTCTC	1 cut(s)	469
Bso31I	GGTCTC	2 cut(s)	766, 794
BsoBI	CYCGRG	1 cut(s)	794
Bsp119I	TTCGAA	2 cut(s)	194, 679
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	5 cut(s)	67, 85, 580, 690, 712
BspACI	CCGC	2 cut(s)	26, 538
BspCNI	CTCAG	3 cut(s)	331, 363, 604
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	666
BspMI	ACCTGC	2 cut(s)	280, 509
BspPI	GGATC	2 cut(s)	75, 93
BspT104I	TTCGAA	2 cut(s)	194, 679
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	2 cut(s)	766, 794
BsrI	ACTGG	2 cut(s)	214, 516
BssECI	CCNNGG	1 cut(s)	795
BssMI	GATC	5 cut(s)	67, 85, 580, 690, 712
BssNI	GRCGYC	2 cut(s)	42, 173
Bst2UI	CCWGG	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	42, 173
BstBI	TTCGAA	2 cut(s)	194, 679
BstDEI	CTNAG	5 cut(s)	318, 327, 371, 446, 612
BstF5I	GGATG	3 cut(s)	349, 424, 456
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	5 cut(s)	70, 88, 583, 693, 715
BstMAI	GTCTC	3 cut(s)	469, 766, 794
BstMBI	GATC	5 cut(s)	67, 85, 580, 690, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	662
BstSLI	GKGCMC	1 cut(s)	795
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	3 cut(s)	67, 85, 690
BstYI	RGATCY	3 cut(s)	67, 85, 690
Bsu36I	CCTNAGG	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	349, 424, 456
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	3 cut(s)	360, 398, 659
BveI	ACCTGC	2 cut(s)	280, 509
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	3 cut(s)	138, 181, 486
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	4 cut(s)	281, 413, 737, 819
CviJI	RGCY	8 cut(s)	227, 370, 410, 569, 575, 641, 701, 779
CviKI_1	RGCY	8 cut(s)	227, 370, 410, 569, 575, 641, 701, 779
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	5 cut(s)	318, 327, 371, 446, 612
DpnI	GATC	5 cut(s)	69, 87, 582, 692, 714
DpnII	GATC	5 cut(s)	67, 85, 580, 690, 712
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	766, 794
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	3 cut(s)	555, 605, 801
Eco81I	CCTNAGG	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	4 cut(s)	284, 416, 740, 822
FaiI	YATR	8 cut(s)	113, 255, 282, 414, 507, 557, 738, 820
FatI	CATG	4 cut(s)	280, 412, 736, 818
Fnu4HI	GCNGC	2 cut(s)	225, 538
FokI	GGATG	3 cut(s)	356, 431, 463
Fsp4HI	GCNGC	2 cut(s)	225, 538
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	225, 538
HgaI	GACGC	3 cut(s)	138, 181, 486
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	2 cut(s)	42, 173
Hin1II	CATG	4 cut(s)	284, 416, 740, 822
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	128, 161, 523, 532
HphI	GGTGA	2 cut(s)	301, 349
Hpy166II	GTNNAC	2 cut(s)	49, 562
Hpy188I	TCNGA	5 cut(s)	160, 386, 522, 531, 585
Hpy188III	TCNNGA	6 cut(s)	71, 89, 611, 688, 694, 737
Hpy8I	GTNNAC	2 cut(s)	49, 562
Hpy99I	CGWCG	4 cut(s)	22, 25, 44, 47
HpyAV	CCTTC	4 cut(s)	190, 214, 238, 580
HpyCH4IV	ACGT	3 cut(s)	42, 644, 753
HpyCH4V	TGCA	3 cut(s)	105, 598, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	5 cut(s)	318, 327, 371, 446, 612
HpySE526I	ACGT	3 cut(s)	42, 644, 753
Hsp92I	GRCGYC	2 cut(s)	42, 173
Hsp92II	CATG	4 cut(s)	284, 416, 740, 822
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	67, 85, 580, 690, 712
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	660
MaeII	ACGT	3 cut(s)	42, 644, 753
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	69, 87, 582, 692, 714
MboI	GATC	5 cut(s)	67, 85, 580, 690, 712
MboII	GAAGA	9 cut(s)	70, 86, 214, 217, 226, 229, 253, 268, 794
MflI	RGATCY	3 cut(s)	67, 85, 690
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	6 cut(s)	98, 552, 602, 707, 765, 786
MluI	ACGCGT	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	671
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	2 cut(s)	227, 779
MspR9I	CCNGG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	5 cut(s)	67, 85, 580, 690, 712
NlaIII	CATG	4 cut(s)	284, 416, 740, 822
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	2 cut(s)	194, 679
PagI	TCATGA	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	128, 523, 532
PkrI	GCNGC	2 cut(s)	226, 539
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	67, 85, 690
PvuII	CAGCTG	2 cut(s)	227, 779
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	417
SatI	GCNGC	2 cut(s)	225, 538
Sau3AI	GATC	5 cut(s)	67, 85, 580, 690, 712
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	1 cut(s)	662
SfuI	TTCGAA	2 cut(s)	194, 679
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	6 cut(s)	98, 552, 602, 707, 765, 786
SsiI	CCGC	2 cut(s)	26, 538
StyD4I	CCNGG	1 cut(s)	564
TaiI	ACGT	3 cut(s)	45, 647, 756
TaqI	TCGA	3 cut(s)	194, 679, 711
TasI	AATT	6 cut(s)	98, 552, 602, 707, 765, 786
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	128, 523, 532
TscAI	CASTG	3 cut(s)	367, 405, 666
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	141, 595, 664, 725
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	3 cut(s)	367, 405, 666
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	602, 707
XmnI	GAANNNNTTC	1 cut(s)	671
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.