Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009131

Physical Location & Seq

Genomic Coordinates Forward (+)

1980542 .. 1982162

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06455.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGGATCAAAGTTGTAAGCCGTTGCAGTTTTTCGTGAGACTACTCGACGGAAAATCAGTAACCCTAACCTTTTCCTCTCCGATAGCGTGTGGCGAGCAGATCAAGCAGCGGATCTTCGAGCAAACGAAGATTCCGACGCATCTACAGAGATTGATAAGCGGAGGATTCCAAATCCCCGGCGCATCCGCGATTTCTCAGTCTGACACCACCATGAATCTTGTCCTGTCCCTCCGTGGAGGCAAAGGTGGACTCGGATCGTTACTTCGTAATGTGGTTATGAAAGCTGGACAGAAGAAGACAAACAATTTCGATTCGTGTGTTGGAGATGGAGCTACGCAGAAGAATGTCAACAAGTATAAGGGGGGATCTGATAAGTGTATTTTGGCTGTGCATTTGGCTTTGAACGAAACTTTCAAGAATGGGAATAAGAGAAAAGGGAAGAAGATGGGTACTGCAGAATCTGAAAAATCGAAACGAATCAAAATATGGAATGGAAAGAGAGCTGTTGAAGATAGTGACAGTGATGATAGCAGTGACGAGGAAGATGAGAAATCTGTTGTTGGTGGTCAAGTTGATTCAGATCATAAGGATACTGATGAAAGCTCAGGCTCTGTTTTGGATGGATCCCATGATGGTGAGAACGACTTTGTAGTGCACCAAAGTTCAGATGTAGTTAAGGGAGAGATCACGGTTGTTCAAAGAATTAACGAAGAGAAGATGGATGATTTTGCTGTTGCTGATGCAATGGATCAACTTGAAAAGGTGGAGAAATCAAGTGGAAACGATGATTTTGTCGTAAAGAGAGGAGGAACTGCGAAAGAAAGAGTGTGTTGCAAACCTGTTGAACCGCTTAACTTTGCTGAGTTCAAAGCAGCCACAGATATGGAGGTTTTGGGGATGGAGAGATTGAAGACTGAGCTTCAGTCACGCGGTCTGAAATGCAGAGGGACATTGCGAGAGCGAGCTGCGAGGCTATTTTTACTTAAATCAACGCCCCTCGATAAGCTCCCGAAGAAATTACTGGCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

345

Amino Acids

37.73

Weight (kDa)

8.67

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	12 - 69	5.8e-06	Ubiquitin family
SDE2_2C	PF13297	282 - 344	9.3e-23	Replication stress response SDE2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06455 AT4G01000 AT4G01000
fragaria_vesca	FvH4_7g16340 FvH4_7g16340
malus_domestica	MD01G1080000.v1.1 MD07G1148800.v1.1
prunus_persica	Prupe.2G187300_v2.0.a1
pyrus_communis	pycom01g10820 pycom01g10830 pycom07g14780
rosa_chinensis	RchiOBHm_Chr1g0359351
rosa_laevigata	RLG00000027877
rosa_multiflora	Rmu_ssc0000358.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297060
rosa_rugosa	Rorug01G0270300 Rorug01G0270400
rosa_samantha	Rh1AG283800 Rh1BG250000 Rh1CG267900 Rh1DG278900
rosa_wichuraiana	Rw1G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	191, 933
AciI	CCGC	6 cut(s)	5, 112, 162, 189, 851, 933
AclWI	GGATC	7 cut(s)	15, 122, 265, 376, 621, 634, 759
AcoI	YGGCCR	1 cut(s)	1026
AcuI	CTGAAG	1 cut(s)	908
AfaI	GTAC	1 cut(s)	454
AgsI	TTSAA	8 cut(s)	406, 418, 512, 701, 761, 848, 871, 913
AluBI	AGCT	7 cut(s)	287, 335, 506, 606, 922, 968, 1009
AluI	AGCT	7 cut(s)	287, 335, 506, 606, 922, 968, 1009
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	7 cut(s)	15, 122, 265, 376, 621, 634, 759
AlwNI	CAGNNNCTG	2 cut(s)	464, 614
AoxI	GGCC	1 cut(s)	1026
ApaLI	GTGCAC	1 cut(s)	656
ApeKI	GCWGC	3 cut(s)	109, 875, 968
AspLEI	GCGC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	1028
BamHI	GGATCC	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	305, 920
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	121, 887, 955
BccI	CCATC	6 cut(s)	323, 442, 617, 629, 715, 895
BceAI	ACGGC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	2 cut(s)	146, 456
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	3 cut(s)	110, 876, 969
BlsI	GCNGC	3 cut(s)	111, 877, 970
Bme1390I	CCNGG	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	3 cut(s)	151, 194, 733
BpiI	GAAGAC	2 cut(s)	305, 920
Bpu10I	CCTNAGC	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	178, 235
Bse1I	ACTGG	1 cut(s)	1029
Bse3DI	GCAATG	2 cut(s)	753, 953
Bse8I	GATNNNNATC	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	178, 235
BseGI	GGATG	4 cut(s)	185, 628, 730, 906
BseJI	GATNNNNATC	1 cut(s)	582
BseMI	GCAATG	2 cut(s)	753, 953
BseMII	CTCAG	4 cut(s)	212, 621, 855, 909
BseNI	ACTGG	1 cut(s)	1029
BseRI	GAGGAG	1 cut(s)	822
BseSI	GKGCMC	1 cut(s)	660
BseXI	GCAGC	3 cut(s)	121, 887, 955
Bsh1236I	CGCG	2 cut(s)	191, 933
BshFI	GGCC	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	214, 964
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	214, 964
BsnI	GGCC	1 cut(s)	1028
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
BspACI	CCGC	6 cut(s)	5, 112, 162, 189, 851, 933
BspANI	GGCC	1 cut(s)	1028
BspCNI	CTCAG	4 cut(s)	211, 620, 856, 910
BspFNI	CGCG	2 cut(s)	191, 933
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	7 cut(s)	15, 122, 265, 376, 621, 634, 759
BsrDI	GCAATG	2 cut(s)	753, 953
BsrI	ACTGG	1 cut(s)	1029
BssECI	CCNNGG	2 cut(s)	178, 235
BssMI	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
Bst4CI	ACNGT	2 cut(s)	524, 694
Bst6I	CTCTTC	1 cut(s)	708
BstC8I	GCNNGC	2 cut(s)	98, 966
BstDEI	CTNAG	4 cut(s)	198, 607, 864, 918
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	4 cut(s)	185, 628, 730, 906
BstFNI	CGCG	2 cut(s)	191, 933
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	9 cut(s)	10, 105, 117, 260, 371, 586, 629, 690, 754
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	2 cut(s)	146, 456
BstSLI	GKGCMC	1 cut(s)	660
BstUI	CGCG	2 cut(s)	191, 933
BstV1I	GCAGC	3 cut(s)	121, 887, 955
BstV2I	GAAGAC	2 cut(s)	305, 920
BstX2I	RGATCY	3 cut(s)	114, 368, 626
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstYI	RGATCY	3 cut(s)	114, 368, 626
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	1028
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	4 cut(s)	185, 628, 730, 906
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	529, 541
Cac8I	GCNNGC	2 cut(s)	98, 966
CaiI	CAGNNNCTG	2 cut(s)	464, 614
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	214, 632
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	4 cut(s)	198, 607, 864, 918
DpnI	GATC	9 cut(s)	9, 104, 116, 259, 370, 585, 628, 689, 753
DpnII	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
EaeI	YGGCCR	1 cut(s)	1026
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	908
FaeI	CATG	2 cut(s)	217, 635
FaiI	YATR	7 cut(s)	215, 281, 360, 490, 588, 633, 887
FaqI	GGGAC	2 cut(s)	214, 964
FatI	CATG	2 cut(s)	213, 631
Fnu4HI	GCNGC	3 cut(s)	110, 876, 969
FokI	GGATG	4 cut(s)	172, 635, 737, 913
Fsp4HI	GCNGC	3 cut(s)	110, 876, 969
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	110, 876, 969
HaeIII	GGCC	1 cut(s)	1028
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	217, 635
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	8 cut(s)	133, 168, 217, 252, 314, 461, 480, 578
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	3 cut(s)	251, 352, 658
Hpy188I	TCNGA	9 cut(s)	84, 138, 205, 257, 373, 466, 583, 670, 939
Hpy188III	TCNNGA	3 cut(s)	37, 418, 1012
Hpy8I	GTNNAC	3 cut(s)	251, 352, 658
Hpy99I	CGWCG	2 cut(s)	53, 142
HpyCH4III	ACNGT	2 cut(s)	524, 694
HpyCH4V	TGCA	7 cut(s)	28, 394, 458, 658, 746, 837, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	4 cut(s)	198, 607, 864, 918
Hsp92II	CATG	2 cut(s)	217, 635
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
LmnI	GCTCC	2 cut(s)	332, 1014
LpnPI	CCDG	6 cut(s)	193, 239, 273, 594, 855, 1010
Lsp1109I	GCAGC	3 cut(s)	121, 887, 955
LweI	GCATC	3 cut(s)	151, 194, 733
MaeIII	GTNAC	5 cut(s)	61, 261, 518, 536, 927
MalI	GATC	9 cut(s)	9, 104, 116, 259, 370, 585, 628, 689, 753
MboI	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
MflI	RGATCY	3 cut(s)	114, 368, 626
MhlI	GDGCHC	1 cut(s)	660
MlsI	TGGCCA	1 cut(s)	1028
MluCI	AATT	3 cut(s)	307, 705, 1019
MluNI	TGGCCA	1 cut(s)	1028
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	161, 304
Mox20I	TGGCCA	1 cut(s)	1028
MscI	TGGCCA	1 cut(s)	1028
MseI	TTAA	4 cut(s)	678, 708, 855, 987
MslI	CAYNNNNRTG	3 cut(s)	212, 636, 884
Msp20I	TGGCCA	1 cut(s)	1028
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	180
MvnI	CGCG	2 cut(s)	191, 933
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
NlaIII	CATG	2 cut(s)	217, 635
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	3 cut(s)	518, 536, 927
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	7 cut(s)	133, 168, 217, 314, 461, 480, 578
PkrI	GCNGC	3 cut(s)	111, 877, 970
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	628
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	2 cut(s)	464, 614
PsuI	RGATCY	3 cut(s)	114, 368, 626
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	3 cut(s)	212, 636, 884
SaqAI	TTAA	4 cut(s)	678, 708, 855, 987
SatI	GCNGC	3 cut(s)	110, 876, 969
Sau3AI	GATC	9 cut(s)	7, 102, 114, 257, 368, 583, 626, 687, 751
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	3 cut(s)	151, 194, 733
SfcI	CTRYAG	2 cut(s)	146, 456
SmiMI	CAYNNNNRTG	3 cut(s)	212, 636, 884
Sse9I	AATT	3 cut(s)	307, 705, 1019
SsiI	CCGC	6 cut(s)	5, 112, 162, 189, 851, 933
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	524, 694
TaqI	TCGA	5 cut(s)	48, 120, 312, 473, 1002
TasI	AATT	3 cut(s)	307, 705, 1019
TfiI	GAWTC	7 cut(s)	133, 168, 217, 314, 461, 480, 578
Tru1I	TTAA	4 cut(s)	678, 708, 855, 987
Tru9I	TTAA	4 cut(s)	678, 708, 855, 987
TscAI	CASTG	2 cut(s)	529, 541
TseFI	GTSAC	3 cut(s)	518, 536, 927
TseI	GCWGC	3 cut(s)	109, 875, 968
Tsp45I	GTSAC	3 cut(s)	518, 536, 927
TspDTI	ATGAA	3 cut(s)	230, 296, 615
TspGWI	ACGGA	2 cut(s)	66, 224
TspRI	CASTG	2 cut(s)	529, 541
VneI	GTGCAC	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.