Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009131

Physical Location & Seq

Genomic Coordinates Reverse (-)

16313850 .. 16315982

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAACGTCTCCGCAGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGCACGCGCCACCTCGGCGACGGCGGCGACTCCGTACTCTCCTGCTCCTCCGACGCGCCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCGACGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGGAGTTTCTGAAGAGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCCGCGACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCTGTGGTGAAGAAAGCCGAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGACAGTGATACTGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTCGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAATCTATTCATGCTGAGAAAAATGTCATGGTTGAACCAGTGATTCAGGATGAGAAGATAGCTACAAGTCCAAGTATACCTTGTTCAGCTTCTGATGCTGTTCTGGGAGATGAAGCAATGGTTCCTAAGTCAGGTGATGGGCAGGGAATTGAAAGTGCATTGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGAGAACACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTTCTTGGCGCGGAAAGGTTGAAATTGGAATTGCAAGCTCGTGGGTTAAAATGTGGGGGTACTCTGCGAGAGCGTGCTGCCAGGCTTTTTATACTTAAATCTACCCCTATAGAGAAGATTCCAAAGAAGCTGCTAGCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

431

Amino Acids

46.87

Weight (kDa)

7.62

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDE2	PF22782	90 - 193	1.7e-23	Splicing regulator SDE2, SDE2 domain
SDE2_2C	PF13297	356 - 429	2.8e-27	Replication stress response SDE2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06455 AT4G01000 AT4G01000
fragaria_vesca	FvH4_7g16340 FvH4_7g16340
malus_domestica	MD01G1080000.v1.1 MD07G1148800.v1.1
prunus_persica	Prupe.2G187300_v2.0.a1
pyrus_communis	pycom01g10820 pycom01g10830 pycom07g14780
rosa_chinensis	RchiOBHm_Chr1g0359351
rosa_laevigata	RLG00000027877
rosa_multiflora	Rmu_ssc0000358.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297060
rosa_rugosa	Rorug01G0270300 Rorug01G0270400
rosa_samantha	Rh1AG283800 Rh1BG250000 Rh1CG267900 Rh1DG278900
rosa_wichuraiana	Rw1G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	952
AccII	CGCG	7 cut(s)	17, 175, 224, 305, 347, 506, 1157
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	3 cut(s)	77, 651, 1111
AcuI	CTGAAG	3 cut(s)	482, 1047, 1110
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	204, 1207
AfiI	CCNNNNNNNGG	3 cut(s)	304, 591, 1007
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	4 cut(s)	875, 911, 1028, 1168
AjnI	CCWGG	3 cut(s)	468, 545, 1226
AluBI	AGCT	6 cut(s)	741, 761, 938, 965, 1184, 1276
AluI	AGCT	6 cut(s)	741, 761, 938, 965, 1184, 1276
Alw26I	GTCTC	2 cut(s)	100, 800
AlwNI	CAGNNNCTG	2 cut(s)	785, 968
AoxI	GGCC	2 cut(s)	543, 582
ApeKI	GCWGC	6 cut(s)	101, 253, 400, 1133, 1223, 1276
ApoI	RAATTY	3 cut(s)	77, 651, 1111
Asp700I	GAANNNNTTC	1 cut(s)	882
AspLEI	GCGC	6 cut(s)	159, 177, 226, 305, 824, 1157
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	6 cut(s)	124, 157, 586, 628, 815, 1022
AsuII	TTCGAA	1 cut(s)	749
AsuNHI	GCTAGC	1 cut(s)	1279
AvaII	GGWCC	1 cut(s)	244
AxyI	CCTNAGG	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	633
BauI	CACGAG	1 cut(s)	1185
BbsI	GAAGAC	1 cut(s)	335
BbvCI	CCTCAGC	3 cut(s)	257, 374, 762
BbvI	GCAGC	6 cut(s)	113, 240, 387, 1145, 1210, 1263
BccI	CCATC	8 cut(s)	116, 430, 652, 700, 794, 850, 1007, 1090
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	470, 547, 1228
BciVI	GTATCC	1 cut(s)	1054
BcoDI	GTCTC	2 cut(s)	100, 800
BfaI	CTAG	1 cut(s)	1280
BfmI	CTRYAG	2 cut(s)	401, 1254
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	1054
BglI	GCCNNNNNGGC	1 cut(s)	183
Bme1390I	CCNGG	3 cut(s)	470, 547, 1228
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	3 cut(s)	470, 547, 1228
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	961
BmtI	GCTAGC	1 cut(s)	1283
BmuI	ACTGGG	1 cut(s)	504
BoxI	GACNNNNGTC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
Bpu10I	CCTNAGC	3 cut(s)	257, 374, 762
Bpu14I	TTCGAA	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	2 cut(s)	181, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 591, 1007
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	5 cut(s)	499, 790, 914, 1071, 1076
Bse21I	CCTNAGG	1 cut(s)	811
Bse3DI	GCAATG	1 cut(s)	999
BseBI	CCWGG	3 cut(s)	470, 547, 1228
BseDI	CCNNGG	2 cut(s)	181, 298
BseGI	GGATG	3 cut(s)	651, 663, 931
BseLI	CCNNNNNNNGG	3 cut(s)	304, 591, 1007
BseMI	GCAATG	1 cut(s)	999
BseMII	CTCAG	8 cut(s)	248, 365, 672, 753, 756, 825, 831, 882
BseNI	ACTGG	5 cut(s)	499, 790, 914, 1071, 1076
BseRI	GAGGAG	6 cut(s)	152, 205, 284, 437, 467, 551
BseXI	GCAGC	6 cut(s)	113, 240, 387, 1145, 1210, 1263
Bsh1236I	CGCG	7 cut(s)	17, 175, 224, 305, 347, 506, 1157
BshFI	GGCC	2 cut(s)	545, 584
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	3 cut(s)	304, 591, 1007
BsmAI	GTCTC	2 cut(s)	100, 800
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	545, 584
Bso31I	GGTCTC	1 cut(s)	800
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	633
BspANI	GGCC	2 cut(s)	545, 584
BspCNI	CTCAG	8 cut(s)	249, 366, 673, 754, 755, 824, 832, 883
BspFNI	CGCG	7 cut(s)	17, 175, 224, 305, 347, 506, 1157
BspLI	GGNNCC	1 cut(s)	999
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	258
BspOI	GCTAGC	1 cut(s)	1283
BspQI	GCTCTTC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	999
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	5 cut(s)	499, 790, 914, 1071, 1076
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	181, 298
BssNAI	GTATAC	1 cut(s)	953
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	1185
Bst1107I	GTATAC	1 cut(s)	953
Bst2BI	CACGAG	1 cut(s)	1185
Bst2UI	CCWGG	3 cut(s)	470, 547, 1228
Bst4CI	ACNGT	4 cut(s)	244, 674, 695, 871
Bst6I	CTCTTC	5 cut(s)	44, 458, 590, 840, 1086
BstACI	GRCGYC	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	749
BstC8I	GCNNGC	4 cut(s)	173, 1182, 1221, 1281
BstDEI	CTNAG	9 cut(s)	257, 374, 681, 742, 762, 811, 840, 891, 1002
BstDSI	CCRYGG	1 cut(s)	298
BstENI	CCTNNNNNAGG	1 cut(s)	1005
BstF5I	GGATG	3 cut(s)	651, 663, 931
BstFNI	CGCG	7 cut(s)	17, 175, 224, 305, 347, 506, 1157
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	6 cut(s)	159, 177, 226, 305, 824, 1157
BstMAI	GTCTC	2 cut(s)	100, 800
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 183, 192, 259, 314, 971
BstNI	CCWGG	3 cut(s)	470, 547, 1228
BstNSI	RCATGY	2 cut(s)	383, 828
BstPAI	GACNNNNGTC	1 cut(s)	348
BstSCI	CCNGG	3 cut(s)	468, 545, 1226
BstSFI	CTRYAG	2 cut(s)	401, 1254
BstUI	CGCG	7 cut(s)	17, 175, 224, 305, 347, 506, 1157
BstV1I	GCAGC	6 cut(s)	113, 240, 387, 1145, 1210, 1263
BstV2I	GAAGAC	1 cut(s)	335
BstZ17I	GTATAC	1 cut(s)	953
Bsu36I	CCTNAGG	1 cut(s)	811
BsuI	GTATCC	1 cut(s)	1054
BsuRI	GGCC	2 cut(s)	545, 584
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	651, 663, 931
BtsIMutI	CAGTG	5 cut(s)	679, 700, 786, 921, 1086
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	173, 1182, 1221, 1281
CaiI	CAGNNNCTG	2 cut(s)	785, 968
CfoI	GCGC	6 cut(s)	159, 177, 226, 305, 824, 1157
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	3 cut(s)	230, 353, 509
Csp6I	GTAC	2 cut(s)	203, 1206
CviAII	CATG	5 cut(s)	380, 586, 825, 887, 904
CviQI	GTAC	2 cut(s)	203, 1206
DdeI	CTNAG	9 cut(s)	257, 374, 681, 742, 762, 811, 840, 891, 1002
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	5 cut(s)	44, 458, 590, 840, 1086
EarI	CTCTTC	5 cut(s)	44, 458, 590, 840, 1086
EciI	GGCGGA	3 cut(s)	20, 137, 382
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	3 cut(s)	482, 1047, 1110
Eco81I	CCTNAGG	1 cut(s)	811
EcoNI	CCTNNNNNAGG	1 cut(s)	1005
EcoRII	CCWGG	3 cut(s)	468, 545, 1226
EcoT38I	GRGCYC	1 cut(s)	633
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	5 cut(s)	383, 589, 828, 890, 907
FalI	AAGNNNNNCTT	2 cut(s)	940, 972
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	5 cut(s)	379, 585, 824, 886, 903
FauI	CCCGC	2 cut(s)	272, 310
FblI	GTMKAC	1 cut(s)	952
FokI	GGATG	3 cut(s)	658, 670, 938
FriOI	GRGCYC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	1280
GlaI	GCGC	6 cut(s)	158, 176, 225, 304, 823, 1156
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	545, 584
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	3 cut(s)	230, 353, 509
HhaI	GCGC	6 cut(s)	159, 177, 226, 305, 824, 1157
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	5 cut(s)	383, 589, 828, 890, 907
Hin6I	GCGC	6 cut(s)	157, 175, 224, 303, 822, 1155
HinP1I	GCGC	6 cut(s)	157, 175, 224, 303, 822, 1155
HinfI	GANTC	9 cut(s)	197, 539, 569, 746, 776, 878, 919, 1067, 1264
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	6 cut(s)	124, 157, 586, 628, 815, 1022
Hpy166II	GTNNAC	3 cut(s)	46, 247, 953
Hpy188I	TCNGA	8 cut(s)	220, 462, 559, 745, 841, 970, 1048, 1066
Hpy188III	TCNNGA	5 cut(s)	82, 238, 353, 875, 923
Hpy8I	GTNNAC	3 cut(s)	46, 247, 953
Hpy99I	CGWCG	7 cut(s)	191, 224, 244, 269, 313, 347, 511
HpyAV	CCTTC	8 cut(s)	50, 268, 307, 439, 472, 481, 571, 595
HpyCH4III	ACNGT	4 cut(s)	244, 674, 695, 871
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	403, 1034, 1180
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 183, 192, 259, 314, 971
HpyF3I	CTNAG	9 cut(s)	257, 374, 681, 742, 762, 811, 840, 891, 1002
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	5 cut(s)	383, 589, 828, 890, 907
HspAI	GCGC	6 cut(s)	157, 175, 224, 303, 822, 1155
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	3 cut(s)	218, 297, 424
Lsp1109I	GCAGC	6 cut(s)	113, 240, 387, 1145, 1210, 1263
LweI	GCATC	1 cut(s)	961
MaeI	CTAG	1 cut(s)	1280
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	6 cut(s)	77, 651, 1023, 1111, 1169, 1175
MluI	ACGCGT	1 cut(s)	345
MlyI	GAGTC	3 cut(s)	191, 548, 1076
MmeI	TCCRAC	3 cut(s)	243, 399, 546
MroXI	GAANNNNTTC	1 cut(s)	882
MseI	TTAA	2 cut(s)	1193, 1242
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	3 cut(s)	470, 547, 1228
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	3 cut(s)	470, 547, 1228
MvnI	CGCG	7 cut(s)	17, 175, 224, 305, 347, 506, 1157
MwoI	GCNNNNNNNGC	6 cut(s)	156, 183, 192, 259, 314, 971
NheI	GCTAGC	1 cut(s)	1279
NlaIII	CATG	5 cut(s)	383, 589, 828, 890, 907
NlaIV	GGNNCC	1 cut(s)	999
NmeAIII	GCCGAG	2 cut(s)	162, 652
NmuCI	GTSAC	1 cut(s)	781
NspI	RCATGY	2 cut(s)	383, 828
NspV	TTCGAA	1 cut(s)	749
PaqCI	CACCTGC	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	6 cut(s)	569, 746, 776, 878, 919, 1264
PleI	GAGTC	3 cut(s)	191, 547, 1075
PpsI	GAGTC	3 cut(s)	191, 547, 1075
PshAI	GACNNNNGTC	1 cut(s)	348
Psp6I	CCWGG	3 cut(s)	468, 545, 1226
PspGI	CCWGG	3 cut(s)	468, 545, 1226
PspN4I	GGNNCC	1 cut(s)	999
PspPI	GGNCC	1 cut(s)	244
PsrI	GAACNNNNNNTAC	2 cut(s)	943, 975
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	2 cut(s)	785, 968
RsaI	GTAC	2 cut(s)	204, 1207
RsaNI	GTAC	2 cut(s)	203, 1206
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	1193, 1242
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	3 cut(s)	191, 548, 1076
ScrFI	CCNGG	3 cut(s)	470, 547, 1228
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	1 cut(s)	961
SfcI	CTRYAG	2 cut(s)	401, 1254
SfuI	TTCGAA	1 cut(s)	749
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	6 cut(s)	77, 651, 1023, 1111, 1169, 1175
SspMI	CTAG	1 cut(s)	1280
StyD4I	CCNGG	3 cut(s)	468, 545, 1226
TaaI	ACNGT	4 cut(s)	244, 674, 695, 871
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	342, 638, 749
TasI	AATT	6 cut(s)	77, 651, 1023, 1111, 1169, 1175
TauI	GCSGC	5 cut(s)	195, 229, 308, 506, 1108
TfiI	GAWTC	6 cut(s)	569, 746, 776, 878, 919, 1264
Tru1I	TTAA	2 cut(s)	1193, 1242
Tru9I	TTAA	2 cut(s)	1193, 1242
TscAI	CASTG	5 cut(s)	679, 700, 786, 921, 1093
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	6 cut(s)	101, 253, 400, 1133, 1223, 1276
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	4 cut(s)	662, 854, 875, 1002
TspGWI	ACGGA	3 cut(s)	190, 287, 524
TspRI	CASTG	5 cut(s)	679, 700, 786, 921, 1093
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	1005
XapI	RAATTY	3 cut(s)	77, 651, 1111
XceI	RCATGY	2 cut(s)	383, 828
XmiI	GTMKAC	1 cut(s)	952
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	1 cut(s)	1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.