Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000358.1

Orthogroup ID

OG0009131

Physical Location & Seq

Genomic Coordinates Forward (+)

338 .. 3485

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

atggcggacaccaccgcgaacccaaccacatacaatctcttcgtaaacctcttggaaggcaaaaccctaaacctaaaattcacgacccccaatgtctccgccgcctccatcaagcaccgcctatacgaaatcaccaaaatacccctccgccaccagcgcctcctcaccgggacgcggcacctcggcgacgactccgtactctcctgctcggacgcggcgcaccacttcccggcggtccacctgctgctgaggctcgtcggggggaagggcgggttcgggtcgctcctccgtggcgcggcgtcgaaggcggggcagaagaagacgagcaacttcgaggcgtgtcgggatatgagcgggcggaggctgaggcatgtgaatgcggagaataggctgcaggagtggagggcgttggaggagcagaggaagatggagaagaagggggagcagtttctgaagagcctggcgaagaagggcaagaagggaactggggacgccgccaccgagaagtatgtcaagaagtatagggaggagtcggccaggtgcgtttccgacgtgttggattccgtgaaggaggccatgagtgggaagaggaaggaggaagatgacagtgatgatgagatggagaaatcaaccatatcaaataatgggaatagctcagattggaataaggaagctgagggcagtttggattcagtgactggtgggaaccaagatggtgagacctcaggtagaggcgcatgtgagagtggctctgaggaagagaaagagatggttgttcatactgttcgagaatctatgcatactgagaaaaatggcatggttgaaccagtgattcaggatgagaagatagctataccttgttcagctcctgatgctgttctgggagttgaagcaatgctagatgaaaagatggattccaatggaactgagatgggaactgtggaagaattaattagtcaacctcagaagattcctaagtcaggtgatgggcagggaattgaaaatacgttgattgtatccgaagccaatggttcttcagagtccagtccagttgagaacactgaagagatggagaagccgctaaattttgatgagttcagttcagcagcagaaatggaggtatgcttgatgggaagaaatgatagtgatacagaggaagatgacagtgatgatgagatggagaaatcaaccatatcaaataatgggaatagctcagatttgaataaggaagctgagggcagtttggattcagtgactggtgggaaacaagatggtgagacctcaggtagaggcgcatgtgagagtggctctgaggaagagaaagagatggttgttcatactgttcaagaatcttttcatactgagaaaaatggcatggttgaaccagtgattcaggatgagaagatagctataccttgttcagctcctgatgctgttctgggaattgaagcaatgctagatgaaaagatggattccaatggaactgagatgggaattgtggtagaattaattagtcaacctcagaagattcctaagtcaggtgatgggcagggaattgaaagtacattgattgtatccgaagccaatggttcttcagagtccagtccagttgagaacactgaagagatggagaagccgctaaattttgatgagttcagttcagcagcagaaatggaggttcttggcgcggaaaggttgaagtcggaattgcaagctcgtgggttaaaatgtgggggtactttgcgagagcgtgctgccaggctttttatgcttaaatctacccctatagagaagattccaaagaagctgctcgcaaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

607

Amino Acids

65.94

Weight (kDa)

4.8

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06455 AT4G01000 AT4G01000
fragaria_vesca	FvH4_7g16340 FvH4_7g16340
malus_domestica	MD01G1080000.v1.1 MD07G1148800.v1.1
prunus_persica	Prupe.2G187300_v2.0.a1
pyrus_communis	pycom01g10820 pycom01g10830 pycom07g14780
rosa_chinensis	RchiOBHm_Chr1g0359351
rosa_laevigata	RLG00000027877
rosa_multiflora	Rmu_ssc0000358.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297060
rosa_rugosa	Rorug01G0270300 Rorug01G0270400
rosa_samantha	Rh1AG283800 Rh1BG250000 Rh1CG267900 Rh1DG278900
rosa_wichuraiana	Rw1G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	354
AccII	CGCG	5 cut(s)	17, 175, 215, 296, 1688
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	3 cut(s)	77, 1084, 1642
AcuI	CTGAAG	5 cut(s)	473, 1020, 1083, 1578, 1641
AcyI	GRCGYC	2 cut(s)	299, 492
AfaI	GTAC	3 cut(s)	198, 1564, 1738
AfiI	CCNNNNNNNGG	6 cut(s)	174, 229, 295, 582, 980, 1538
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	9 cut(s)	824, 890, 1001, 1222, 1346, 1382, 1448, 1559, 1699
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	3 cut(s)	459, 536, 1757
Alw26I	GTCTC	3 cut(s)	100, 713, 1271
AlwNI	CAGNNNCTG	5 cut(s)	451, 698, 869, 1256, 1427
AoxI	GGCC	2 cut(s)	534, 573
ApeKI	GCWGC	6 cut(s)	244, 391, 1106, 1664, 1754, 1807
ApoI	RAATTY	3 cut(s)	77, 1084, 1642
AseI	ATTAAT	2 cut(s)	950, 1508
Asp700I	GAANNNNTTC	1 cut(s)	1353
AspLEI	GCGC	6 cut(s)	159, 220, 296, 737, 1295, 1688
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	2 cut(s)	169, 230
AsuHPI	GGTGA	6 cut(s)	124, 157, 728, 995, 1286, 1553
AvaII	GGWCC	1 cut(s)	235
AxyI	CCTNAGG	2 cut(s)	724, 1282
BanI	GGYRCC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	1716
BbsI	GAAGAC	1 cut(s)	326
BbvCI	CCTCAGC	4 cut(s)	248, 365, 675, 1233
BbvI	GCAGC	6 cut(s)	231, 378, 1118, 1676, 1741, 1794
BciT130I	CCWGG	3 cut(s)	461, 538, 1759
BciVI	GTATCC	2 cut(s)	1027, 1585
BcnI	CCSGG	2 cut(s)	169, 230
BcoDI	GTCTC	3 cut(s)	100, 713, 1271
BfaI	CTAG	2 cut(s)	899, 1457
BfmI	CTRYAG	2 cut(s)	392, 1785
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	249
BfuI	GTATCC	2 cut(s)	1027, 1585
Bme1390I	CCNGG	5 cut(s)	169, 230, 461, 538, 1759
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	179, 707
BmrFI	CCNGG	5 cut(s)	169, 230, 461, 538, 1759
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	862, 1420
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	326
BplI	GAGNNNNNCTC	4 cut(s)	734, 766, 1292, 1324
Bpu10I	CCTNAGC	4 cut(s)	248, 365, 675, 1233
BpuMI	CCSGG	2 cut(s)	169, 230
BsaHI	GRCGYC	2 cut(s)	299, 492
BsaI	GGTCTC	2 cut(s)	713, 1271
BsaJI	CCNNGG	2 cut(s)	181, 289
Bsc4I	CCNNNNNNNGG	6 cut(s)	174, 229, 295, 582, 980, 1538
Bse1I	ACTGG	9 cut(s)	490, 703, 827, 1044, 1049, 1261, 1385, 1602, 1607
Bse21I	CCTNAGG	2 cut(s)	724, 1282
Bse3DI	GCAATG	2 cut(s)	900, 1458
BseBI	CCWGG	3 cut(s)	461, 538, 1759
BseDI	CCNNGG	2 cut(s)	181, 289
BseGI	GGATG	2 cut(s)	844, 1402
BseLI	CCNNNNNNNGG	6 cut(s)	174, 229, 295, 582, 980, 1538
BseMI	GCAATG	2 cut(s)	900, 1458
BseNI	ACTGG	9 cut(s)	490, 703, 827, 1044, 1049, 1261, 1385, 1602, 1607
BseRI	GAGGAG	4 cut(s)	152, 275, 428, 542
BseXI	GCAGC	6 cut(s)	231, 378, 1118, 1676, 1741, 1794
Bsh1236I	CGCG	5 cut(s)	17, 175, 215, 296, 1688
BshFI	GGCC	2 cut(s)	536, 575
BshNI	GGYRCC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	168, 230
BslFI	GGGAC	2 cut(s)	184, 503
BslI	CCNNNNNNNGG	6 cut(s)	174, 229, 295, 582, 980, 1538
BsmAI	GTCTC	3 cut(s)	100, 713, 1271
BsmFI	GGGAC	2 cut(s)	184, 503
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	536, 575
Bso31I	GGTCTC	2 cut(s)	713, 1271
BspANI	GGCC	2 cut(s)	536, 575
BspFNI	CGCG	5 cut(s)	17, 175, 215, 296, 1688
BspLI	GGNNCC	2 cut(s)	179, 707
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	2 cut(s)	713, 1271
BsrBI	CCGCTC	1 cut(s)	354
BsrDI	GCAATG	2 cut(s)	900, 1458
BsrI	ACTGG	9 cut(s)	490, 703, 827, 1044, 1049, 1261, 1385, 1602, 1607
BssECI	CCNNGG	2 cut(s)	181, 289
BssNI	GRCGYC	2 cut(s)	299, 492
BssSI	CACGAG	1 cut(s)	1716
Bst2BI	CACGAG	1 cut(s)	1716
Bst2UI	CCWGG	3 cut(s)	461, 538, 1759
Bst4CI	ACNGT	5 cut(s)	608, 784, 940, 1166, 1342
Bst6I	CTCTTC	7 cut(s)	44, 449, 581, 753, 1059, 1311, 1617
BstACI	GRCGYC	2 cut(s)	299, 492
BstC8I	GCNNGC	4 cut(s)	356, 1713, 1752, 1812
BstDSI	CCRYGG	1 cut(s)	289
BstENI	CCTNNNNNAGG	2 cut(s)	978, 1536
BstF5I	GGATG	2 cut(s)	844, 1402
BstFNI	CGCG	5 cut(s)	17, 175, 215, 296, 1688
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	6 cut(s)	159, 220, 296, 737, 1295, 1688
BstMAI	GTCTC	3 cut(s)	100, 713, 1271
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 250, 305, 872, 1430, 1768
BstNI	CCWGG	3 cut(s)	461, 538, 1759
BstNSI	RCATGY	3 cut(s)	374, 741, 1299
BstSCI	CCNGG	5 cut(s)	167, 228, 459, 536, 1757
BstSFI	CTRYAG	2 cut(s)	392, 1785
BstUI	CGCG	5 cut(s)	17, 175, 215, 296, 1688
BstV1I	GCAGC	6 cut(s)	231, 378, 1118, 1676, 1741, 1794
BstV2I	GAAGAC	1 cut(s)	326
Bsu36I	CCTNAGG	2 cut(s)	724, 1282
BsuI	GTATCC	2 cut(s)	1027, 1585
BsuRI	GGCC	2 cut(s)	536, 575
BtgI	CCRYGG	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	844, 1402
BtsIMutI	CAGTG	8 cut(s)	613, 699, 834, 1059, 1171, 1257, 1392, 1617
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	4 cut(s)	356, 1713, 1752, 1812
CaiI	CAGNNNCTG	5 cut(s)	451, 698, 869, 1256, 1427
CfoI	GCGC	6 cut(s)	159, 220, 296, 737, 1295, 1688
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	4 cut(s)	181, 221, 288, 500
Csp6I	GTAC	3 cut(s)	197, 1563, 1737
CviAII	CATG	6 cut(s)	371, 577, 738, 817, 1296, 1375
CviQI	GTAC	3 cut(s)	197, 1563, 1737
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	7 cut(s)	44, 449, 581, 753, 1059, 1311, 1617
EarI	CTCTTC	7 cut(s)	44, 449, 581, 753, 1059, 1311, 1617
EciI	GGCGGA	4 cut(s)	20, 88, 137, 373
Eco31I	GGTCTC	2 cut(s)	713, 1271
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	5 cut(s)	473, 1020, 1083, 1578, 1641
Eco81I	CCTNAGG	2 cut(s)	724, 1282
EcoNI	CCTNNNNNAGG	2 cut(s)	978, 1536
EcoRII	CCWGG	3 cut(s)	459, 536, 1757
EcoT22I	ATGCAT	1 cut(s)	801
FaeI	CATG	6 cut(s)	374, 580, 741, 820, 1299, 1378
FaqI	GGGAC	2 cut(s)	184, 503
FatI	CATG	6 cut(s)	370, 576, 737, 816, 1295, 1374
FauI	CCCGC	3 cut(s)	263, 301, 347
FokI	GGATG	2 cut(s)	851, 1409
FspBI	CTAG	2 cut(s)	899, 1457
GlaI	GCGC	6 cut(s)	158, 219, 295, 736, 1294, 1687
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	536, 575
HapII	CCGG	2 cut(s)	168, 230
HgaI	GACGC	4 cut(s)	181, 221, 288, 500
HhaI	GCGC	6 cut(s)	159, 220, 296, 737, 1295, 1688
Hin1I	GRCGYC	2 cut(s)	299, 492
Hin1II	CATG	6 cut(s)	374, 580, 741, 820, 1299, 1378
Hin6I	GCGC	6 cut(s)	157, 218, 294, 735, 1293, 1686
HinP1I	GCGC	6 cut(s)	157, 218, 294, 735, 1293, 1686
HincII	GTYRAC	2 cut(s)	959, 1517
HindII	GTYRAC	2 cut(s)	959, 1517
HpaII	CCGG	2 cut(s)	168, 230
HphI	GGTGA	6 cut(s)	124, 157, 728, 995, 1286, 1553
Hpy166II	GTNNAC	4 cut(s)	46, 238, 959, 1517
Hpy188III	TCNNGA	9 cut(s)	82, 344, 514, 788, 836, 869, 1346, 1394, 1427
Hpy8I	GTNNAC	4 cut(s)	46, 238, 959, 1517
Hpy99I	CGWCG	4 cut(s)	191, 260, 304, 554
HpyAV	CCTTC	8 cut(s)	50, 259, 298, 430, 463, 472, 562, 586
HpyCH4III	ACNGT	5 cut(s)	608, 784, 940, 1166, 1342
HpyCH4IV	ACGT	2 cut(s)	552, 1007
HpyCH4V	TGCA	3 cut(s)	394, 799, 1711
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 250, 305, 872, 1430, 1768
HpySE526I	ACGT	2 cut(s)	552, 1007
Hsp92I	GRCGYC	2 cut(s)	299, 492
Hsp92II	CATG	6 cut(s)	374, 580, 741, 820, 1299, 1378
HspAI	GCGC	6 cut(s)	157, 218, 294, 735, 1293, 1686
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	5 cut(s)	288, 415, 442, 871, 1429
Lsp1109I	GCAGC	6 cut(s)	231, 378, 1118, 1676, 1741, 1794
LweI	GCATC	2 cut(s)	862, 1420
MaeI	CTAG	2 cut(s)	899, 1457
MaeII	ACGT	2 cut(s)	552, 1007
MaeIII	GTNAC	2 cut(s)	694, 1252
MbiI	CCGCTC	1 cut(s)	354
MlyI	GAGTC	4 cut(s)	185, 539, 1049, 1607
MmeI	TCCRAC	4 cut(s)	390, 537, 573, 1683
Mph1103I	ATGCAT	1 cut(s)	801
MroXI	GAANNNNTTC	1 cut(s)	1353
MseI	TTAA	4 cut(s)	950, 1508, 1724, 1773
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	2 cut(s)	168, 230
MspR9I	CCNGG	5 cut(s)	169, 230, 461, 538, 1759
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	3 cut(s)	461, 538, 1759
MvnI	CGCG	5 cut(s)	17, 175, 215, 296, 1688
MwoI	GCNNNNNNNGC	6 cut(s)	156, 250, 305, 872, 1430, 1768
NciI	CCSGG	2 cut(s)	169, 230
NlaIII	CATG	6 cut(s)	374, 580, 741, 820, 1299, 1378
NlaIV	GGNNCC	2 cut(s)	179, 707
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	694, 1252
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	3 cut(s)	374, 741, 1299
PaqCI	CACCTGC	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	1353
PleI	GAGTC	4 cut(s)	185, 538, 1048, 1606
PpsI	GAGTC	4 cut(s)	185, 538, 1048, 1606
PshBI	ATTAAT	2 cut(s)	950, 1508
Psp6I	CCWGG	3 cut(s)	459, 536, 1757
PspGI	CCWGG	3 cut(s)	459, 536, 1757
PspN4I	GGNNCC	2 cut(s)	179, 707
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	5 cut(s)	451, 698, 869, 1256, 1427
RsaI	GTAC	3 cut(s)	198, 1564, 1738
RsaNI	GTAC	3 cut(s)	197, 1563, 1737
RseI	CAYNNNNRTG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	4 cut(s)	950, 1508, 1724, 1773
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	4 cut(s)	185, 539, 1049, 1607
ScrFI	CCNGG	5 cut(s)	169, 230, 461, 538, 1759
SfaNI	GCATC	2 cut(s)	862, 1420
SfcI	CTRYAG	2 cut(s)	392, 1785
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	375
SspMI	CTAG	2 cut(s)	899, 1457
StyD4I	CCNGG	5 cut(s)	167, 228, 459, 536, 1757
TaaI	ACNGT	5 cut(s)	608, 784, 940, 1166, 1342
TaiI	ACGT	2 cut(s)	555, 1010
TaqI	TCGA	3 cut(s)	302, 333, 787
TatI	WGTACW	1 cut(s)	1562
TauI	GCSGC	7 cut(s)	104, 178, 218, 299, 497, 1081, 1639
Tru1I	TTAA	4 cut(s)	950, 1508, 1724, 1773
Tru9I	TTAA	4 cut(s)	950, 1508, 1724, 1773
TscAI	CASTG	8 cut(s)	613, 699, 834, 1066, 1171, 1257, 1392, 1624
TseFI	GTSAC	2 cut(s)	694, 1252
TseI	GCWGC	6 cut(s)	244, 391, 1106, 1664, 1754, 1807
Tsp45I	GTSAC	2 cut(s)	694, 1252
TspDTI	ATGAA	5 cut(s)	767, 918, 1325, 1346, 1476
TspGWI	ACGGA	3 cut(s)	184, 278, 553
TspRI	CASTG	8 cut(s)	613, 699, 834, 1066, 1171, 1257, 1392, 1624
VpaK11BI	GGWCC	1 cut(s)	235
VspI	ATTAAT	2 cut(s)	950, 1508
XagI	CCTNNNNNAGG	2 cut(s)	978, 1536
XapI	RAATTY	3 cut(s)	77, 1084, 1642
XceI	RCATGY	3 cut(s)	374, 741, 1299
XmnI	GAANNNNTTC	1 cut(s)	1353
XspI	CTAG	2 cut(s)	899, 1457
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.