Rh1AG283800

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009131
Physical Location & Seq
Forward (+)
51253668 .. 51256176
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG283800.1

Sequence Viewer

Length: 1251 bp
ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAATGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGGACGCGCCACCTCGGCGACGACGACGACTCCGTGCTCTCCTGCTCCGACGCGGCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCGTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGGGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCCGCCACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCCGTGGTGAAGAATGCCCAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGATAGTGATACAGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTTGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAAGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGCTTGTTCATACTGTTCAAGAATCTTTTCATACTGAGAAAAATGGCATGGTTGTACCATTGATTCAGGATGAGAAGATAACTATACCTTGTTCAGCTCCTGATGCTGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAATTGTGGAAGAATTAATCAGTCAACCTCAGAAGATTCCTAAGTCAGGTGATGGACAGGGAATTGAAAGTACATTGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGAGAACACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTATGCTTGTTGAAACTACTTTATCATGTCATTTTTAGGGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

416

Amino Acids

45.73

Weight (kDa)

5.73

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 89 - 192 2.4e-23 Splicing regulator SDE2, SDE2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccII CGCG 5 cut(s) 17, 175, 221, 302, 344
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 3 cut(s) 77, 648, 1168
AcuI CTGAAG 3 cut(s) 479, 1104, 1167
AcyI GRCGYC 2 cut(s) 305, 498
AfaI GTAC 2 cut(s) 909, 1090
AfiI CCNNNNNNNGG 3 cut(s) 301, 588, 1064
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 5 cut(s) 748, 872, 974, 1085, 1216
AjnI CCWGG 2 cut(s) 465, 542
AluBI AGCT 3 cut(s) 738, 758, 950
AluI AGCT 3 cut(s) 738, 758, 950
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 100, 797
AlwNI CAGNNNCTG 3 cut(s) 457, 782, 953
AoxI GGCC 4 cut(s) 463, 540, 579, 606
ApeKI GCWGC 3 cut(s) 250, 397, 1190
ApoI RAATTY 3 cut(s) 77, 648, 1168
AseI ATTAAT 1 cut(s) 1034
Asp700I GAANNNNTTC 1 cut(s) 879
AspLEI GCGC 5 cut(s) 159, 177, 226, 302, 821
AspS9I GGNCC 2 cut(s) 241, 463
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 6 cut(s) 124, 157, 583, 625, 812, 1079
AvaII GGWCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 3 cut(s) 254, 371, 759
BbvI GCAGC 3 cut(s) 237, 384, 1202
BccI CCATC 9 cut(s) 116, 427, 649, 697, 791, 988, 1009, 1064, 1147
BceAI ACGGC 1 cut(s) 593
BciT130I CCWGG 2 cut(s) 467, 544
BciVI GTATCC 1 cut(s) 1111
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 100, 797
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 1 cut(s) 1111
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 8 cut(s) 102, 222, 251, 303, 398, 501, 1163, 1191
BlsI GCNGC 8 cut(s) 103, 223, 252, 304, 399, 502, 1164, 1192
Bme1390I CCNGG 3 cut(s) 169, 467, 544
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 241, 463
BmrFI CCNGG 3 cut(s) 169, 467, 544
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 843, 946
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 818, 850
Bpu10I CCTNAGC 3 cut(s) 254, 371, 759
BpuEI CTTGAG 1 cut(s) 793
BpuMI CCSGG 1 cut(s) 169
BsaHI GRCGYC 2 cut(s) 305, 498
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 4 cut(s) 181, 295, 504, 609
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 588, 1064
Bse1I ACTGG 4 cut(s) 496, 787, 1128, 1133
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 467, 544
BseDI CCNNGG 4 cut(s) 181, 295, 504, 609
BseGI GGATG 3 cut(s) 648, 660, 928
BseLI CCNNNNNNNGG 3 cut(s) 301, 588, 1064
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 8 cut(s) 245, 362, 750, 753, 828, 879, 1002, 1061
BseNI ACTGG 4 cut(s) 496, 787, 1128, 1133
BseRI GAGGAG 4 cut(s) 152, 281, 434, 548
BseXI GCAGC 3 cut(s) 237, 384, 1202
BseYI CCCAGC 1 cut(s) 624
Bsh1236I CGCG 5 cut(s) 17, 175, 221, 302, 344
BshFI GGCC 4 cut(s) 465, 542, 581, 608
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 184, 509
BslI CCNNNNNNNGG 3 cut(s) 301, 588, 1064
BsmAI GTCTC 2 cut(s) 100, 797
BsmFI GGGAC 2 cut(s) 184, 509
BsmI GAATGC 2 cut(s) 388, 625
BsnI GGCC 4 cut(s) 465, 542, 581, 608
Bso31I GGTCTC 1 cut(s) 797
Bsp1286I GDGCHC 1 cut(s) 207
BspANI GGCC 4 cut(s) 465, 542, 581, 608
BspCNI CTCAG 8 cut(s) 246, 363, 751, 752, 829, 880, 1003, 1060
BspFNI CGCG 5 cut(s) 17, 175, 221, 302, 344
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 4 cut(s) 496, 787, 1128, 1133
BssECI CCNNGG 4 cut(s) 181, 295, 504, 609
BssNI GRCGYC 2 cut(s) 305, 498
Bst2UI CCWGG 2 cut(s) 467, 544
Bst4CI ACNGT 3 cut(s) 241, 692, 868
Bst6I CTCTTC 4 cut(s) 44, 587, 837, 1143
BstACI GRCGYC 2 cut(s) 305, 498
BstDEI CTNAG 9 cut(s) 254, 371, 739, 759, 837, 888, 1011, 1047, 1059
BstDSI CCRYGG 3 cut(s) 295, 504, 609
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 3 cut(s) 648, 660, 928
BstFNI CGCG 5 cut(s) 17, 175, 221, 302, 344
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 5 cut(s) 159, 177, 226, 302, 821
BstMAI GTCTC 2 cut(s) 100, 797
BstMWI GCNNNNNNNGC 5 cut(s) 156, 183, 256, 311, 956
BstNI CCWGG 2 cut(s) 467, 544
BstNSI RCATGY 2 cut(s) 380, 825
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 167, 465, 542
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 5 cut(s) 17, 175, 221, 302, 344
BstV1I GCAGC 3 cut(s) 237, 384, 1202
BstV2I GAAGAC 1 cut(s) 332
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 4 cut(s) 465, 542, 581, 608
BtgI CCRYGG 3 cut(s) 295, 504, 609
BtsCI GGATG 3 cut(s) 648, 660, 928
BtsIMutI CAGTG 3 cut(s) 697, 783, 1143
BveI ACCTGC 1 cut(s) 255
CaiI CAGNNNCTG 3 cut(s) 457, 782, 953
CfoI GCGC 5 cut(s) 159, 177, 226, 302, 821
Cfr13I GGNCC 2 cut(s) 241, 463
CseI GACGC 5 cut(s) 181, 227, 294, 350, 506
Csp6I GTAC 2 cut(s) 908, 1089
CviAII CATG 5 cut(s) 377, 583, 822, 901, 1229
CviQI GTAC 2 cut(s) 908, 1089
DdeI CTNAG 9 cut(s) 254, 371, 739, 759, 837, 888, 1011, 1047, 1059
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 4 cut(s) 44, 587, 837, 1143
EarI CTCTTC 4 cut(s) 44, 587, 837, 1143
EciI GGCGGA 4 cut(s) 20, 88, 137, 379
Eco31I GGTCTC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 3 cut(s) 479, 1104, 1167
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 465, 542
FaeI CATG 5 cut(s) 380, 586, 825, 904, 1232
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 2 cut(s) 184, 509
FatI CATG 5 cut(s) 376, 582, 821, 900, 1228
FauI CCCGC 2 cut(s) 269, 307
Fnu4HI GCNGC 8 cut(s) 102, 222, 251, 303, 398, 501, 1163, 1191
FokI GGATG 3 cut(s) 655, 667, 935
Fsp4HI GCNGC 8 cut(s) 102, 222, 251, 303, 398, 501, 1163, 1191
FspBI CTAG 1 cut(s) 983
GlaI GCGC 5 cut(s) 158, 176, 225, 301, 820
GluI GCNGC 8 cut(s) 102, 222, 251, 303, 398, 501, 1163, 1191
GsaI CCCAGC 1 cut(s) 628
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 4 cut(s) 465, 542, 581, 608
HapII CCGG 1 cut(s) 168
HgaI GACGC 5 cut(s) 181, 227, 294, 350, 506
HhaI GCGC 5 cut(s) 159, 177, 226, 302, 821
Hin1I GRCGYC 2 cut(s) 305, 498
Hin1II CATG 5 cut(s) 380, 586, 825, 904, 1232
Hin6I GCGC 5 cut(s) 157, 175, 224, 300, 819
HinP1I GCGC 5 cut(s) 157, 175, 224, 300, 819
HincII GTYRAC 1 cut(s) 1043
HindII GTYRAC 1 cut(s) 1043
HinfI GANTC 9 cut(s) 197, 536, 566, 773, 875, 916, 998, 1054, 1124
HpaII CCGG 1 cut(s) 168
HphI GGTGA 6 cut(s) 124, 157, 583, 625, 812, 1079
Hpy166II GTNNAC 3 cut(s) 46, 244, 1043
Hpy188I TCNGA 8 cut(s) 217, 459, 556, 742, 838, 1050, 1105, 1123
Hpy188III TCNNGA 6 cut(s) 82, 235, 350, 872, 920, 953
Hpy8I GTNNAC 3 cut(s) 46, 244, 1043
Hpy99I CGWCG 8 cut(s) 191, 194, 197, 221, 241, 266, 310, 344
HpyAV CCTTC 9 cut(s) 50, 265, 304, 436, 454, 469, 478, 568, 592
HpyCH4III ACNGT 3 cut(s) 241, 692, 868
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 183, 256, 311, 956
HpyF3I CTNAG 9 cut(s) 254, 371, 739, 759, 837, 888, 1011, 1047, 1059
Hsp92I GRCGYC 2 cut(s) 305, 498
Hsp92II CATG 5 cut(s) 380, 586, 825, 904, 1232
HspAI GCGC 5 cut(s) 157, 175, 224, 300, 819
LmnI GCTCC 5 cut(s) 218, 294, 421, 448, 955
Lsp1109I GCAGC 3 cut(s) 237, 384, 1202
LweI GCATC 2 cut(s) 843, 946
MaeI CTAG 1 cut(s) 983
MaeIII GTNAC 1 cut(s) 778
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 6 cut(s) 77, 648, 1020, 1031, 1080, 1168
MluI ACGCGT 1 cut(s) 342
MlyI GAGTC 3 cut(s) 191, 545, 1133
MmeI TCCRAC 3 cut(s) 240, 396, 543
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 1 cut(s) 1034
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 3 cut(s) 169, 467, 544
Mva1269I GAATGC 2 cut(s) 388, 625
MvaI CCWGG 2 cut(s) 467, 544
MvnI CGCG 5 cut(s) 17, 175, 221, 302, 344
MwoI GCNNNNNNNGC 5 cut(s) 156, 183, 256, 311, 956
NciI CCSGG 1 cut(s) 169
NlaIII CATG 5 cut(s) 380, 586, 825, 904, 1232
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 2 cut(s) 380, 825
PaqCI CACCTGC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 198
PctI GAATGC 2 cut(s) 388, 625
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 6 cut(s) 566, 773, 875, 916, 998, 1054
PkrI GCNGC 8 cut(s) 103, 223, 252, 304, 399, 502, 1164, 1192
PleI GAGTC 3 cut(s) 191, 544, 1132
PpsI GAGTC 3 cut(s) 191, 544, 1132
PshAI GACNNNNGTC 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 1034
Psp6I CCWGG 2 cut(s) 465, 542
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 2 cut(s) 465, 542
PspPI GGNCC 2 cut(s) 241, 463
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 3 cut(s) 457, 782, 953
RsaI GTAC 2 cut(s) 909, 1090
RsaNI GTAC 2 cut(s) 908, 1089
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 1034
SatI GCNGC 8 cut(s) 102, 222, 251, 303, 398, 501, 1163, 1191
Sau96I GGNCC 2 cut(s) 241, 463
SchI GAGTC 3 cut(s) 191, 545, 1133
ScrFI CCNGG 3 cut(s) 169, 467, 544
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 2 cut(s) 843, 946
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 6 cut(s) 77, 648, 1020, 1031, 1080, 1168
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 3 cut(s) 167, 465, 542
TaaI ACNGT 3 cut(s) 241, 692, 868
TaqI TCGA 3 cut(s) 308, 339, 635
TasI AATT 6 cut(s) 77, 648, 1020, 1031, 1080, 1168
TatI WGTACW 1 cut(s) 1088
TauI GCSGC 5 cut(s) 104, 224, 305, 503, 1165
TfiI GAWTC 6 cut(s) 566, 773, 875, 916, 998, 1054
Tru1I TTAA 1 cut(s) 1034
Tru9I TTAA 1 cut(s) 1034
TscAI CASTG 3 cut(s) 697, 783, 1150
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 3 cut(s) 250, 397, 1190
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 659, 851, 872, 1002
TspGWI ACGGA 3 cut(s) 190, 284, 521
TspRI CASTG 3 cut(s) 697, 783, 1150
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 1034
XagI CCTNNNNNAGG 1 cut(s) 1062
XapI RAATTY 3 cut(s) 77, 648, 1168
XceI RCATGY 2 cut(s) 380, 825
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.