FvH4_7g16340

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009131
Physical Location & Seq
Forward (+)
14009872 .. 14012179
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16340.t1

Sequence Viewer

Length: 1326 bp
ATGGCGGACACCACCACGAGCCCCGCCACATACAATCTCTTCGTCAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACAACCCCCAATGTCTCCGCCGCCTCCATCAAGCACCGCCTCCACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGCACCCGCCACCTCGCCGACTCCGACTCCCTAACCCCCGACGCGGCGGCGCAGCTCCCCACGGTCCACCTCCTGCTGAGGCTGGTCGGAGGGAAAGGCGGGTTCGGGTCGCTGCTCCGGGGGGCGGCGACGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAACGCGGAGAATAAGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAAGGGGAGGAGTTTCTGAAGAGCTTGGCGAAGAAGGGGAAGAAGGGGAGTGGGGACGTGGCGGCGGAGAAGTATGTGAAGAAATATAAGGAGGAGTCCGCGAGATGCGTTTCGGAGGTGGTGGATGCGGTGAAGGAGGCTATGAGTGGGAAGAGGAAGGGGAAGGGTTTGGAGCCCAAGTCGAAAAGGGTGAAACTTTGGGACAGTGATACAGAGGAAGATGACAGTGATAATGAAGATGAGAAGGAGAAATCAACTGTATCAAACAATGGGAATAGCTCAGATTCGAATAAGGAAGCTGGGGGAGGTAGTTTGGATTCAGTGACTGGTGGGAAACAAGAGGGTGAGTCCTCAGGTAGAGGCTCATCTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATATTGATCAAGAATCTATTCCTATTGAGAAGAATGACATGGTTGAGGATGAGAAGATAGCTACAAGTGCAAGTATACCTTGTTCAGCTGCTGATACTGTTCTGGGAGTTGAAGCAATGCAAGATGAAAATATAGATTGCAGTGGGATTGAGATGCAACCTCAGGAGATCTCTAAGTCAAGTGACGGGCAAGGAGTGGAAAGTACATCGATTGTATCGGAAGCCAATGGTTCTTTAGAGTCCAGTCCAGTTGTTCAGGAAGAAACAGTTGCTAATGGGAACACTGCAGAGATGGAGAAGCCGCTAAATTTTGATGACTTCAATTCAGCAGCAGAAATGGAGGTTCTTGGCGCGGAAAGATTGAAATTGGAACTGCAAGCTTATGGGTTAAAATGTGGTGGTACTCTGCGAGAGCGTGCTGCCAGGCTTTTTATGCTTAAATCTACCCCTATAGAGAAGATTCCGAAGAAGCTCCTGGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

442

Amino Acids

47.82

Weight (kDa)

5.59

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 86 - 189 8.1e-24 Splicing regulator SDE2, SDE2 domain
SDE2_2C PF13297 362 - 440 3.4e-27 Replication stress response SDE2 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 913
AccII CGCG 5 cut(s) 212, 335, 377, 533, 1190
AcsI RAATTY 2 cut(s) 77, 1144
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 2 cut(s) 1042, 1240
AfiI CCNNNNNNNGG 2 cut(s) 211, 292
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 950, 1159, 1201
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 2 cut(s) 1259, 1311
AluBI AGCT 9 cut(s) 223, 388, 456, 711, 731, 899, 926, 1217, 1309
AluI AGCT 9 cut(s) 223, 388, 456, 711, 731, 899, 926, 1217, 1309
Alw26I GTCTC 1 cut(s) 100
AlwNI CAGNNNCTG 2 cut(s) 758, 929
ApeKI GCWGC 6 cut(s) 220, 280, 388, 926, 1166, 1256
ApoI RAATTY 2 cut(s) 77, 1144
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 3 cut(s) 159, 220, 1190
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 5 cut(s) 124, 157, 574, 634, 788
AsuII TTCGAA 1 cut(s) 719
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 2 cut(s) 784, 999
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 23, 609
BauI CACGAG 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 323
BbvCI CCTCAGC 2 cut(s) 245, 362
BbvI GCAGC 6 cut(s) 232, 267, 375, 913, 1178, 1243
BccI CCATC 4 cut(s) 116, 418, 823, 1123
BciT130I CCWGG 2 cut(s) 1261, 1313
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 100
BfmI CTRYAG 3 cut(s) 389, 1122, 1287
BfoI RGCGCY 1 cut(s) 160
BglII AGATCT 1 cut(s) 1005
Bme1390I CCNGG 3 cut(s) 287, 1261, 1313
Bme18I GGWCC 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 172, 606
BmrFI CCNGG 3 cut(s) 287, 1261, 1313
BmsI GCATC 3 cut(s) 527, 547, 981
BoxI GACNNNNGTC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 794, 826
Bpu10I CCTNAGC 2 cut(s) 245, 362
Bpu14I TTCGAA 1 cut(s) 719
BpuMI CCSGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 1046
BsaJI CCNNGG 2 cut(s) 228, 286
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 292
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 763, 1080, 1085
Bse21I CCTNAGG 2 cut(s) 784, 999
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 2 cut(s) 1261, 1313
BseCI ATCGAT 1 cut(s) 1046
BseDI CCNNGG 2 cut(s) 228, 286
BseGI GGATG 2 cut(s) 562, 892
BseLI CCNNNNNNNGG 2 cut(s) 211, 292
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 7 cut(s) 236, 353, 726, 792, 798, 804, 1013
BseNI ACTGG 3 cut(s) 763, 1080, 1085
BseRI GAGGAG 4 cut(s) 152, 425, 455, 539
BseXI GCAGC 6 cut(s) 232, 267, 375, 913, 1178, 1243
BseYI CCCAGC 1 cut(s) 731
Bsh1236I CGCG 5 cut(s) 212, 335, 377, 533, 1190
BshNI GGYRCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 1046
BsiSI CCGG 2 cut(s) 168, 286
BslFI GGGAC 2 cut(s) 500, 647
BslI CCNNNNNNNGG 2 cut(s) 211, 292
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 500, 647
Bsp119I TTCGAA 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 23, 609
Bsp143I GATC 2 cut(s) 844, 1005
BspCNI CTCAG 7 cut(s) 237, 354, 725, 793, 797, 805, 1012
BspDI ATCGAT 1 cut(s) 1046
BspFNI CGCG 5 cut(s) 212, 335, 377, 533, 1190
BspLI GGNNCC 2 cut(s) 172, 606
BspMAI CTGCAG 2 cut(s) 393, 1126
BspQI GCTCTTC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 719
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 960
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 3 cut(s) 763, 1080, 1085
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 228, 286
BssMI GATC 2 cut(s) 844, 1005
BssNAI GTATAC 1 cut(s) 914
BssSI CACGAG 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 914
Bst2BI CACGAG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 1261, 1313
Bst4CI ACNGT 6 cut(s) 232, 638, 659, 691, 937, 1105
Bst6I CTCTTC 4 cut(s) 44, 446, 578, 813
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 2 cut(s) 1215, 1254
BstDEI CTNAG 8 cut(s) 245, 362, 712, 784, 801, 813, 999, 1011
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 562, 892
BstFNI CGCG 5 cut(s) 212, 335, 377, 533, 1190
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 3 cut(s) 159, 220, 1190
BstKTI GATC 2 cut(s) 847, 1008
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 844, 1005
BstMWI GCNNNNNNNGC 4 cut(s) 156, 302, 905, 1270
BstNI CCWGG 2 cut(s) 1261, 1313
BstNSI RCATGY 1 cut(s) 371
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 3 cut(s) 285, 1259, 1311
BstSFI CTRYAG 3 cut(s) 389, 1122, 1287
BstUI CGCG 5 cut(s) 212, 335, 377, 533, 1190
BstV1I GCAGC 6 cut(s) 232, 267, 375, 913, 1178, 1243
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 1005
BstYI RGATCY 1 cut(s) 1005
BstZ17I GTATAC 1 cut(s) 914
Bsu15I ATCGAT 1 cut(s) 1046
Bsu36I CCTNAGG 2 cut(s) 784, 999
BsuTUI ATCGAT 1 cut(s) 1046
BtgI CCRYGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 2 cut(s) 562, 892
BtsI GCAGTG 2 cut(s) 985, 1119
BtsIMutI CAGTG 5 cut(s) 643, 664, 759, 985, 1119
Cac8I GCNNGC 2 cut(s) 1215, 1254
CaiI CAGNNNCTG 2 cut(s) 758, 929
CfoI GCGC 3 cut(s) 159, 220, 1190
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 1046
CseI GACGC 2 cut(s) 218, 341
Csp6I GTAC 2 cut(s) 1041, 1239
CviAII CATG 2 cut(s) 368, 877
CviQI GTAC 2 cut(s) 1041, 1239
DdeI CTNAG 8 cut(s) 245, 362, 712, 784, 801, 813, 999, 1011
DpnI GATC 2 cut(s) 846, 1007
DpnII GATC 2 cut(s) 844, 1005
Eam1104I CTCTTC 4 cut(s) 44, 446, 578, 813
EarI CTCTTC 4 cut(s) 44, 446, 578, 813
EciI GGCGGA 5 cut(s) 20, 88, 137, 370, 512
Eco24I GRGCYC 2 cut(s) 23, 609
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 470
Eco81I CCTNAGG 2 cut(s) 784, 999
EcoRII CCWGG 2 cut(s) 1259, 1311
EcoT38I GRGCYC 2 cut(s) 23, 609
FaeI CATG 2 cut(s) 371, 880
FalI AAGNNNNNCTT 2 cut(s) 901, 933
FaqI GGGAC 2 cut(s) 500, 647
FatI CATG 2 cut(s) 367, 876
FauI CCCGC 4 cut(s) 31, 182, 260, 298
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 1 cut(s) 913
FokI GGATG 2 cut(s) 569, 899
FriOI GRGCYC 2 cut(s) 23, 609
GlaI GCGC 3 cut(s) 158, 219, 1189
GsaI CCCAGC 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 160
HapII CCGG 2 cut(s) 168, 286
HgaI GACGC 2 cut(s) 218, 341
HhaI GCGC 3 cut(s) 159, 220, 1190
Hin1II CATG 2 cut(s) 371, 880
Hin6I GCGC 3 cut(s) 157, 218, 1188
HinP1I GCGC 3 cut(s) 157, 218, 1188
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 1215
HinfI GANTC 9 cut(s) 188, 194, 527, 716, 749, 779, 851, 1076, 1297
HpaII CCGG 2 cut(s) 168, 286
HphI GGTGA 5 cut(s) 124, 157, 574, 634, 788
Hpy166II GTNNAC 4 cut(s) 46, 235, 373, 914
Hpy188I TCNGA 9 cut(s) 193, 257, 450, 547, 715, 802, 814, 1057, 1302
Hpy188III TCNNGA 4 cut(s) 341, 848, 1001, 1094
Hpy8I GTNNAC 4 cut(s) 46, 235, 373, 914
Hpy99I CGWCG 3 cut(s) 212, 301, 335
HpyAV CCTTC 8 cut(s) 50, 295, 460, 469, 559, 583, 589, 670
HpyCH4III ACNGT 6 cut(s) 232, 638, 659, 691, 937, 1105
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 7 cut(s) 391, 908, 958, 978, 994, 1124, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 302, 905, 1270
HpyF3I CTNAG 8 cut(s) 245, 362, 712, 784, 801, 813, 999, 1011
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 2 cut(s) 371, 880
HspAI GCGC 3 cut(s) 157, 218, 1188
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 2 cut(s) 844, 1005
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 5 cut(s) 228, 288, 412, 604, 1314
Lsp1109I GCAGC 6 cut(s) 232, 267, 375, 913, 1178, 1243
LweI GCATC 3 cut(s) 527, 547, 981
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 754, 1019
MalI GATC 2 cut(s) 846, 1007
MboI GATC 2 cut(s) 844, 1005
MflI RGATCY 1 cut(s) 1005
MhlI GDGCHC 2 cut(s) 23, 609
MluCI AATT 4 cut(s) 77, 1144, 1159, 1202
MluI ACGCGT 1 cut(s) 333
MlyI GAGTC 5 cut(s) 182, 188, 536, 788, 1085
MmeI TCCRAC 3 cut(s) 216, 235, 387
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 2 cut(s) 1226, 1275
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 2 cut(s) 168, 286
MspR9I CCNGG 3 cut(s) 287, 1261, 1313
MvaI CCWGG 2 cut(s) 1261, 1313
MvnI CGCG 5 cut(s) 212, 335, 377, 533, 1190
MwoI GCNNNNNNNGC 4 cut(s) 156, 302, 905, 1270
NciI CCSGG 1 cut(s) 287
NdeII GATC 2 cut(s) 844, 1005
NlaIII CATG 2 cut(s) 371, 880
NlaIV GGNNCC 2 cut(s) 172, 606
NmuCI GTSAC 2 cut(s) 754, 1019
NspI RCATGY 1 cut(s) 371
NspV TTCGAA 1 cut(s) 719
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 4 cut(s) 716, 749, 851, 1297
PleI GAGTC 5 cut(s) 182, 188, 535, 787, 1084
PpsI GAGTC 5 cut(s) 182, 188, 535, 787, 1084
PshAI GACNNNNGTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 1259, 1311
PspFI CCCAGC 1 cut(s) 731
PspGI CCWGG 2 cut(s) 1259, 1311
PspN4I GGNNCC 2 cut(s) 172, 606
PspPI GGNCC 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 904, 936
PstI CTGCAG 2 cut(s) 393, 1126
PstNI CAGNNNCTG 2 cut(s) 758, 929
PsuI RGATCY 1 cut(s) 1005
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 2 cut(s) 1042, 1240
RsaNI GTAC 2 cut(s) 1041, 1239
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 2 cut(s) 1226, 1275
Sau3AI GATC 2 cut(s) 844, 1005
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 5 cut(s) 182, 188, 536, 788, 1085
ScrFI CCNGG 3 cut(s) 287, 1261, 1313
SduI GDGCHC 2 cut(s) 23, 609
SfaNI GCATC 3 cut(s) 527, 547, 981
SfcI CTRYAG 3 cut(s) 389, 1122, 1287
SfuI TTCGAA 1 cut(s) 719
SinI GGWCC 1 cut(s) 232
Sse9I AATT 4 cut(s) 77, 1144, 1159, 1202
StyD4I CCNGG 3 cut(s) 285, 1259, 1311
TaaI ACNGT 6 cut(s) 232, 638, 659, 691, 937, 1105
TaiI ACGT 1 cut(s) 492
TaqI TCGA 4 cut(s) 330, 614, 719, 1046
TasI AATT 4 cut(s) 77, 1144, 1159, 1202
TatI WGTACW 1 cut(s) 1040
TauI GCSGC 6 cut(s) 104, 215, 218, 296, 497, 1141
TfiI GAWTC 4 cut(s) 716, 749, 851, 1297
Tru1I TTAA 2 cut(s) 1226, 1275
Tru9I TTAA 2 cut(s) 1226, 1275
TscAI CASTG 5 cut(s) 643, 664, 759, 985, 1126
TseFI GTSAC 2 cut(s) 754, 1019
TseI GCWGC 6 cut(s) 220, 280, 388, 926, 1166, 1256
Tsp45I GTSAC 2 cut(s) 754, 1019
TspDTI ATGAA 3 cut(s) 681, 827, 978
TspRI CASTG 5 cut(s) 643, 664, 759, 985, 1126
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 77, 1144
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.