Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009131

Physical Location & Seq

Genomic Coordinates Forward (+)

21733239 .. 21735960

Gene Structure 2722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1148800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCGGAATCCACCGTCACCAAATCCAGCACCTACAACTTATTCGTGAAACTTTTGGAGGGCAAAACCCTAACCCTAAAATTCACAACCCCGAAGATCCCCGCCACTTCCATCAAGCACCTCTTATACAAAATCACCAAAATACCCCTCCATCACCAGCGCCTCGTCACCGGGACTCGCCAACTCAAGGATGATTCCGTCATCTCGTGTTCCTCCTCCGACGCGCCGTACTTCCCAACGGTGCATCTTCTGCTCCGGCTCGTCGGTGGAAAGGGCGGGTTCGGGTCGCTGCTGCGTGGGGCTGCGACGAAGGCCGGGCAGAAGAAGACGAGTAATTTCGACGCGTGTCGTGATATGAGTGGTCGGAGGCTGCGGCATGTTAATGCGGAGAAGAAGCTTGAGGAGTGGAGGGCTGAGGAAGAAGAGAGGATGCTCGAAAAGATGGCGGAGGATTATTTGAAGCGTATTGCGAAGAAGGGGAAAGTGGGAACTGGAGACGATAAGGCTGAGAAGTATGTGGCCAAGTATAGGGAGCAATCGGAACGCTGTGTTTCGGAGGTTTTGGATTCGGTTAAGGAGGCTGTTAAGGGAAAGCGTAGGGGGGCGGCCAAGGAACCAGTGGCAGATTCGAAAAGGCTGAAAATTTGGATGGGCAAGAGGAAAATGGGCGAAAGTGATTCAGAGGATGACGACAGTGATAATGAAGATAAAAATGAGAAATCCATTGTATTAAATAATGGGAATAACTCAGATTCAAGTAAAGAAACTGAGAGAAGTTTGGATTCTGTGACTGGTAGGAAACAAGATGGTGAGATCTCAGGTGGGGGCTCAAGTGAGAGTGGCTCGGAGGAAGAGAAAGAGATGGTTGTGCAGGGAGCACAACCTTTTGGTGGAGGCCCTGGTCAAGAATCTCTTGATAACGAGAAGAATGAGATGGTTGAACCAGTGATTCCTGAAGAGAAGATGGTTAGTAGTGCAAGTGTTACTTGTTCAGAGCTTGATACGGTTTCGGGAGTTGAAGCAGATCAAGATGGAAAGATAGGTTGCAGTGGACCTGAGATGGGAAATCTGAATGAAGTAGTTGGTCAATCCCAGAAGGTTCCTAGTTCAGGGCATGGGCAAGAAATTGAAAGTGCATCAGTCATTGCTGAAGCCAATGATTCAGGAGTTCAGGAGGAAACAGTTGCGAGTGGAAACACTCTAGAGATAGAGAAGCCACTGAATTTTGATGAGTACGGTTCAGCAGCTGAAATGGAGGTTCTTGGCCGGGAAAGGTTAAAGTCTGAACTGCAAACTCGTGGGCTAAAGTGCGGGGGTACTCTGCAGGAGCAAGCTGCGAGGCTTTTCATGCTAAAAGCTACCCCGATCGAGAAGATTCCAAAGAAGCTCCTTGCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

468

Amino Acids

50.91

Weight (kDa)

5.83

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDE2	PF22782	89 - 192	9.1e-25	Splicing regulator SDE2, SDE2 domain
SDE2_2C	PF13297	389 - 466	9e-26	Replication stress response SDE2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06455 AT4G01000 AT4G01000
fragaria_vesca	FvH4_7g16340 FvH4_7g16340
malus_domestica	MD01G1080000.v1.1 MD07G1148800.v1.1
prunus_persica	Prupe.2G187300_v2.0.a1
pyrus_communis	pycom01g10820 pycom01g10830 pycom07g14780
rosa_chinensis	RchiOBHm_Chr1g0359351
rosa_laevigata	RLG00000027877
rosa_multiflora	Rmu_ssc0000358.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297060
rosa_rugosa	Rorug01G0270300 Rorug01G0270400
rosa_samantha	Rh1AG283800 Rh1BG250000 Rh1CG267900 Rh1DG278900
rosa_wichuraiana	Rw1G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	224, 344
AciI	CCGC	8 cut(s)	5, 102, 276, 373, 386, 446, 605, 1311
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	3 cut(s)	519, 606, 1264
AcsI	RAATTY	3 cut(s)	80, 642, 1222
AcuI	CTGAAG	2 cut(s)	975, 1170
AfaI	GTAC	3 cut(s)	230, 1235, 1318
AfiI	CCNNNNNNNGG	5 cut(s)	187, 528, 890, 1061, 1109
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	460, 756, 941, 1019, 1130
AjnI	CCWGG	1 cut(s)	898
AluBI	AGCT	6 cut(s)	397, 997, 1247, 1334, 1358, 1387
AluI	AGCT	6 cut(s)	397, 997, 1247, 1334, 1358, 1387
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	1247
AoxI	GGCC	5 cut(s)	312, 519, 606, 895, 1264
ApeKI	GCWGC	6 cut(s)	289, 292, 302, 370, 1244, 1334
ApoI	RAATTY	3 cut(s)	80, 642, 1222
AspLEI	GCGC	2 cut(s)	162, 226
AspS9I	GGNCC	2 cut(s)	896, 1052
AsuC2I	CCSGG	3 cut(s)	172, 316, 1268
AsuHPI	GGTGA	5 cut(s)	10, 127, 146, 160, 821
AsuII	TTCGAA	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	1052
BalI	TGGCCA	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	830
BauI	CACGAG	2 cut(s)	205, 1296
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	880
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	6 cut(s)	276, 279, 289, 357, 1256, 1321
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	900
BcnI	CCSGG	3 cut(s)	172, 316, 1268
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	2 cut(s)	1104, 1202
BfmI	CTRYAG	1 cut(s)	1322
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	813
BisI	GCNGC	8 cut(s)	290, 293, 303, 371, 374, 606, 1245, 1335
BlsI	GCNGC	8 cut(s)	291, 294, 304, 372, 375, 607, 1246, 1336
Bme1390I	CCNGG	4 cut(s)	172, 316, 900, 1268
Bme18I	GGWCC	1 cut(s)	1052
BmgT120I	GGNCC	2 cut(s)	896, 1052
BmiI	GGNNCC	2 cut(s)	615, 1101
BmrFI	CCNGG	4 cut(s)	172, 316, 900, 1268
BmsI	GCATC	3 cut(s)	253, 420, 1145
BoxI	GACNNNNGTC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	3 cut(s)	170, 419, 814
BpuMI	CCSGG	3 cut(s)	172, 316, 1268
BsaJI	CCNNGG	2 cut(s)	609, 898
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 528, 890, 1061, 1109
Bse1I	ACTGG	4 cut(s)	496, 617, 796, 944
Bse3DI	GCAATG	1 cut(s)	1143
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	2 cut(s)	609, 898
BseGI	GGATG	4 cut(s)	196, 435, 654, 691
BseLI	CCNNNNNNNGG	5 cut(s)	187, 528, 890, 1061, 1109
BseMI	GCAATG	1 cut(s)	1143
BseMII	CTCAG	6 cut(s)	405, 498, 759, 762, 831, 1047
BseNI	ACTGG	4 cut(s)	496, 617, 796, 944
BseRI	GAGGAG	2 cut(s)	205, 416
BseXI	GCAGC	6 cut(s)	276, 279, 289, 357, 1256, 1321
BsgI	GTGCAG	1 cut(s)	890
Bsh1236I	CGCG	2 cut(s)	224, 344
Bsh1285I	CGRYCG	1 cut(s)	1368
BshFI	GGCC	5 cut(s)	314, 521, 608, 897, 1266
BsiEI	CGRYCG	1 cut(s)	1368
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	4 cut(s)	171, 256, 315, 1267
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	5 cut(s)	187, 528, 890, 1061, 1109
BsmAI	GTCTC	1 cut(s)	489
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	5 cut(s)	314, 521, 608, 897, 1266
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	830, 880
Bsp143I	GATC	4 cut(s)	96, 813, 1024, 1365
BspACI	CCGC	8 cut(s)	5, 102, 276, 373, 386, 446, 605, 1311
BspANI	GGCC	5 cut(s)	314, 521, 608, 897, 1266
BspCNI	CTCAG	6 cut(s)	406, 499, 760, 761, 830, 1048
BspFNI	CGCG	2 cut(s)	224, 344
BspLI	GGNNCC	2 cut(s)	615, 1101
BspMAI	CTGCAG	1 cut(s)	1326
BspPI	GGATC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	1143
BsrI	ACTGG	4 cut(s)	496, 617, 796, 944
BssECI	CCNNGG	2 cut(s)	609, 898
BssMI	GATC	4 cut(s)	96, 813, 1024, 1365
BssSI	CACGAG	2 cut(s)	205, 1296
BssT1I	CCWWGG	1 cut(s)	609
Bst2BI	CACGAG	2 cut(s)	205, 1296
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	6 cut(s)	16, 241, 695, 1006, 1183, 1238
Bst6I	CTCTTC	3 cut(s)	417, 846, 951
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	1332
BstDEI	CTNAG	6 cut(s)	414, 507, 748, 768, 817, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	1107
BstF5I	GGATG	4 cut(s)	196, 435, 654, 691
BstFNI	CGCG	2 cut(s)	224, 344
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	162, 226
BstKTI	GATC	4 cut(s)	99, 816, 1027, 1368
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	4 cut(s)	96, 813, 1024, 1365
BstMCI	CGRYCG	1 cut(s)	1368
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 311, 1348
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	1 cut(s)	380
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSCI	CCNGG	4 cut(s)	170, 314, 898, 1266
BstSFI	CTRYAG	1 cut(s)	1322
BstUI	CGCG	2 cut(s)	224, 344
BstV1I	GCAGC	6 cut(s)	276, 279, 289, 357, 1256, 1321
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	96, 813
BstYI	RGATCY	2 cut(s)	96, 813
BsuRI	GGCC	5 cut(s)	314, 521, 608, 897, 1266
BtsCI	GGATG	4 cut(s)	196, 435, 654, 691
BtsI	GCAGTG	1 cut(s)	1054
BtsIMutI	CAGTG	5 cut(s)	624, 700, 951, 1054, 1217
Cac8I	GCNNGC	1 cut(s)	1332
CaiI	CAGNNNCTG	1 cut(s)	1247
CfoI	GCGC	2 cut(s)	162, 226
Cfr13I	GGNCC	2 cut(s)	896, 1052
CseI	GACGC	2 cut(s)	230, 350
Csp6I	GTAC	3 cut(s)	229, 1234, 1317
CviAII	CATG	3 cut(s)	377, 1115, 1348
CviQI	GTAC	3 cut(s)	229, 1234, 1317
DdeI	CTNAG	6 cut(s)	414, 507, 748, 768, 817, 1056
DpnI	GATC	4 cut(s)	98, 815, 1026, 1367
DpnII	GATC	4 cut(s)	96, 813, 1024, 1365
EaeI	YGGCCR	3 cut(s)	519, 606, 1264
Eam1104I	CTCTTC	3 cut(s)	417, 846, 951
EarI	CTCTTC	3 cut(s)	417, 846, 951
EciI	GGCGGA	2 cut(s)	20, 461
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	830
Eco47I	GGWCC	1 cut(s)	1052
Eco57I	CTGAAG	2 cut(s)	975, 1170
EcoNI	CCTNNNNNAGG	1 cut(s)	1107
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	3 cut(s)	380, 1118, 1351
FaiI	YATR	7 cut(s)	127, 356, 378, 516, 528, 1116, 1349
FalI	AAGNNNNNCTT	6 cut(s)	107, 139, 897, 929, 970, 1002
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	376, 1114, 1347
FauI	CCCGC	3 cut(s)	109, 269, 1304
Fnu4HI	GCNGC	8 cut(s)	290, 293, 303, 371, 374, 606, 1245, 1335
FokI	GGATG	4 cut(s)	203, 442, 661, 698
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	8 cut(s)	290, 293, 303, 371, 374, 606, 1245, 1335
FspBI	CTAG	2 cut(s)	1104, 1202
GlaI	GCGC	2 cut(s)	161, 225
GluI	GCNGC	8 cut(s)	290, 293, 303, 371, 374, 606, 1245, 1335
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	5 cut(s)	314, 521, 608, 897, 1266
HapII	CCGG	4 cut(s)	171, 256, 315, 1267
HgaI	GACGC	2 cut(s)	230, 350
HhaI	GCGC	2 cut(s)	162, 226
Hin1II	CATG	3 cut(s)	380, 1118, 1351
Hin6I	GCGC	2 cut(s)	160, 224
HinP1I	GCGC	2 cut(s)	160, 224
HindIII	AAGCTT	1 cut(s)	395
HpaII	CCGG	4 cut(s)	171, 256, 315, 1267
HphI	GGTGA	5 cut(s)	10, 127, 146, 160, 821
Hpy166II	GTNNAC	1 cut(s)	1052
Hpy8I	GTNNAC	1 cut(s)	1052
Hpy99I	CGWCG	4 cut(s)	224, 266, 310, 344
HpyAV	CCTTC	3 cut(s)	304, 469, 1090
HpyCH4III	ACNGT	6 cut(s)	16, 241, 695, 1006, 1183, 1238
HpyCH4V	TGCA	8 cut(s)	244, 871, 977, 1047, 1136, 1291, 1324, 1394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 311, 1348
HpyF3I	CTNAG	6 cut(s)	414, 507, 748, 768, 817, 1056
Hsp92II	CATG	3 cut(s)	380, 1118, 1351
HspAI	GCGC	2 cut(s)	160, 224
Kzo9I	GATC	4 cut(s)	96, 813, 1024, 1365
LmnI	GCTCC	5 cut(s)	258, 532, 875, 1327, 1392
Lsp1109I	GCAGC	6 cut(s)	276, 279, 289, 357, 1256, 1321
LweI	GCATC	3 cut(s)	253, 420, 1145
MaeI	CTAG	2 cut(s)	1104, 1202
MaeIII	GTNAC	4 cut(s)	16, 166, 787, 982
MalI	GATC	4 cut(s)	98, 815, 1026, 1367
MboI	GATC	4 cut(s)	96, 813, 1024, 1365
MflI	RGATCY	2 cut(s)	96, 813
MhlI	GDGCHC	2 cut(s)	830, 880
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	5 cut(s)	80, 334, 642, 1125, 1222
MluI	ACGCGT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	243, 344
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	5 cut(s)	381, 573, 585, 731, 1277
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	1247
MspI	CCGG	4 cut(s)	171, 256, 315, 1267
MspR9I	CCNGG	4 cut(s)	172, 316, 900, 1268
MvaI	CCWGG	1 cut(s)	900
MvnI	CGCG	2 cut(s)	224, 344
MwoI	GCNNNNNNNGC	3 cut(s)	250, 311, 1348
NciI	CCSGG	3 cut(s)	172, 316, 1268
NdeII	GATC	4 cut(s)	96, 813, 1024, 1365
NlaIII	CATG	3 cut(s)	380, 1118, 1351
NlaIV	GGNNCC	2 cut(s)	615, 1101
NmuCI	GTSAC	3 cut(s)	16, 166, 787
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	629
PkrI	GCNGC	8 cut(s)	291, 294, 304, 372, 375, 607, 1246, 1336
Ple19I	CGATCG	1 cut(s)	1368
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	2 cut(s)	615, 1101
PspPI	GGNCC	2 cut(s)	896, 1052
PstI	CTGCAG	1 cut(s)	1326
PstNI	CAGNNNCTG	1 cut(s)	1247
PsuI	RGATCY	2 cut(s)	96, 813
PvuI	CGATCG	1 cut(s)	1368
PvuII	CAGCTG	1 cut(s)	1247
RsaI	GTAC	3 cut(s)	230, 1235, 1318
RsaNI	GTAC	3 cut(s)	229, 1234, 1317
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	5 cut(s)	381, 573, 585, 731, 1277
SatI	GCNGC	8 cut(s)	290, 293, 303, 371, 374, 606, 1245, 1335
Sau3AI	GATC	4 cut(s)	96, 813, 1024, 1365
Sau96I	GGNCC	2 cut(s)	896, 1052
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	4 cut(s)	172, 316, 900, 1268
SduI	GDGCHC	2 cut(s)	830, 880
SfaNI	GCATC	3 cut(s)	253, 420, 1145
SfcI	CTRYAG	1 cut(s)	1322
SfuI	TTCGAA	1 cut(s)	629
SinI	GGWCC	1 cut(s)	1052
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	3 cut(s)	185, 398, 829
SmoI	CTYRAG	3 cut(s)	185, 398, 829
Sse9I	AATT	5 cut(s)	80, 334, 642, 1125, 1222
SsiI	CCGC	8 cut(s)	5, 102, 276, 373, 386, 446, 605, 1311
SspMI	CTAG	2 cut(s)	1104, 1202
StyD4I	CCNGG	4 cut(s)	170, 314, 898, 1266
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	6 cut(s)	16, 241, 695, 1006, 1183, 1238
TaqI	TCGA	4 cut(s)	339, 435, 629, 1368
TasI	AATT	5 cut(s)	80, 334, 642, 1125, 1222
TauI	GCSGC	2 cut(s)	376, 608
Tru1I	TTAA	5 cut(s)	381, 573, 585, 731, 1277
Tru9I	TTAA	5 cut(s)	381, 573, 585, 731, 1277
TscAI	CASTG	5 cut(s)	624, 700, 951, 1054, 1224
TseFI	GTSAC	3 cut(s)	16, 166, 787
TseI	GCWGC	6 cut(s)	289, 292, 302, 370, 1244, 1334
Tsp45I	GTSAC	3 cut(s)	16, 166, 787
TspDTI	ATGAA	3 cut(s)	717, 1089, 1336
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	5 cut(s)	624, 700, 951, 1054, 1224
VpaK11BI	GGWCC	1 cut(s)	1052
XagI	CCTNNNNNAGG	1 cut(s)	1107
XapI	RAATTY	3 cut(s)	80, 642, 1222
XbaI	TCTAGA	1 cut(s)	1201
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XspI	CTAG	2 cut(s)	1104, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.