Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009131

Physical Location & Seq

Genomic Coordinates Reverse (-)

17066250 .. 17068825

Gene Structure 2576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACAACCCCCAATGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGGCTCCTCACCGGCACGCGCCAACTCGGCGACGGCGACTCCGTACTCTCCTGCTCCGACGCGCCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCGTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGTTGCAGGAGTGGAGGGCTTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGGAGTTTCTGAAGGGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCCGCGACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCTGTGGTGAAGAATGCCGGACCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGACAGTGATACAGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTTGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAACAGATGGTTGTTCATACTGTTCAAGAATCTATTCATACTGAGAAGAATGTCATGGTTGAACCAGTGATTCAGGATGAGAAGATAGCTACAAGTCCAAGTATACCTTGTTCAGCTCCTGATGCTGTTCTGGGAGTTGAAGCAATGCAAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAAATATGGAAGAATTAGTTAGTCAACCTCAGAAGATTTCTAAGTCAGATGATGGGCAAGGAGTTGAAAGTACATCGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGTTCAGGAAGAAACATTTGCTAATGAGAAAACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTTCTTGGCGCGGAAAGGTTGAAATCGGAATTGCAAGCTCGTGGGTTAAAATGTGGGGGTACTCTGCGAGAGCGTGCTGCCAGGCTTTTTATGCTTAAATCTACCCCTATAGAGAAGATTCCAAAGAAGCTGCTAGCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

460

Amino Acids

50.32

Weight (kDa)

6.34

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDE2	PF22782	88 - 191	3.1e-23	Splicing regulator SDE2, SDE2 domain
SDE2_2C	PF13297	381 - 459	2.3e-28	Replication stress response SDE2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06455 AT4G01000 AT4G01000
fragaria_vesca	FvH4_7g16340 FvH4_7g16340
malus_domestica	MD01G1080000.v1.1 MD07G1148800.v1.1
prunus_persica	Prupe.2G187300_v2.0.a1
pyrus_communis	pycom01g10820 pycom01g10830 pycom07g14780
rosa_chinensis	RchiOBHm_Chr1g0359351
rosa_laevigata	RLG00000027877
rosa_multiflora	Rmu_ssc0000358.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297060
rosa_rugosa	Rorug01G0270300 Rorug01G0270400
rosa_samantha	Rh1AG283800 Rh1BG250000 Rh1CG267900 Rh1DG278900
rosa_wichuraiana	Rw1G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	946
AccII	CGCG	7 cut(s)	17, 175, 218, 299, 341, 500, 1247
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	77, 645, 1201
AcuI	CTGAAG	3 cut(s)	476, 1113, 1200
AcyI	GRCGYC	2 cut(s)	302, 495
AfaI	GTAC	3 cut(s)	201, 1099, 1297
AfiI	CCNNNNNNNGG	2 cut(s)	298, 585
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	6 cut(s)	745, 869, 905, 983, 1094, 1258
AjnI	CCWGG	3 cut(s)	462, 539, 1316
AluBI	AGCT	6 cut(s)	735, 755, 932, 959, 1274, 1366
AluI	AGCT	6 cut(s)	735, 755, 932, 959, 1274, 1366
Alw26I	GTCTC	2 cut(s)	100, 794
AlwNI	CAGNNNCTG	2 cut(s)	779, 962
AoxI	GGCC	3 cut(s)	460, 537, 576
ApeKI	GCWGC	4 cut(s)	247, 1223, 1313, 1366
ApoI	RAATTY	3 cut(s)	77, 645, 1201
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	5 cut(s)	177, 220, 299, 818, 1247
AspS9I	GGNCC	3 cut(s)	238, 460, 623
AsuHPI	GGTGA	5 cut(s)	124, 157, 580, 622, 809
AsuNHI	GCTAGC	1 cut(s)	1369
AvaII	GGWCC	2 cut(s)	238, 623
AxyI	CCTNAGG	1 cut(s)	805
BauI	CACGAG	1 cut(s)	1275
BbsI	GAAGAC	1 cut(s)	329
BbvCI	CCTCAGC	3 cut(s)	251, 368, 756
BbvI	GCAGC	4 cut(s)	234, 1235, 1300, 1353
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	464, 541, 1318
BciVI	GTATCC	1 cut(s)	1120
BcoDI	GTCTC	2 cut(s)	100, 794
BfaI	CTAG	1 cut(s)	1370
BfmI	CTRYAG	1 cut(s)	1344
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	1120
BglI	GCCNNNNNGGC	1 cut(s)	183
Bme1390I	CCNGG	3 cut(s)	464, 541, 1318
Bme18I	GGWCC	2 cut(s)	238, 623
BmgT120I	GGNCC	3 cut(s)	238, 460, 623
BmiI	GGNNCC	2 cut(s)	161, 625
BmrFI	CCNGG	3 cut(s)	464, 541, 1318
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	955
BmtI	GCTAGC	1 cut(s)	1373
BmuI	ACTGGG	1 cut(s)	498
BoxI	GACNNNNGTC	2 cut(s)	342, 628
BpiI	GAAGAC	1 cut(s)	329
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
Bpu10I	CCTNAGC	3 cut(s)	251, 368, 756
Bsa29I	ATCGAT	1 cut(s)	1103
BsaHI	GRCGYC	2 cut(s)	302, 495
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 585
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	5 cut(s)	493, 784, 908, 1137, 1142
Bse21I	CCTNAGG	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	993
BseBI	CCWGG	3 cut(s)	464, 541, 1318
BseCI	ATCGAT	1 cut(s)	1103
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	3 cut(s)	645, 657, 925
BseLI	CCNNNNNNNGG	2 cut(s)	298, 585
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	9 cut(s)	242, 359, 747, 750, 819, 825, 876, 1011, 1070
BseNI	ACTGG	5 cut(s)	493, 784, 908, 1137, 1142
BseRI	GAGGAG	5 cut(s)	152, 278, 431, 461, 545
BseXI	GCAGC	4 cut(s)	234, 1235, 1300, 1353
Bsh1236I	CGCG	7 cut(s)	17, 175, 218, 299, 341, 500, 1247
BshFI	GGCC	3 cut(s)	462, 539, 578
BshVI	ATCGAT	1 cut(s)	1103
BsiSI	CCGG	2 cut(s)	168, 621
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	298, 585
BsmAI	GTCTC	2 cut(s)	100, 794
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	2 cut(s)	385, 622
BsnI	GGCC	3 cut(s)	462, 539, 578
Bso31I	GGTCTC	1 cut(s)	794
BspANI	GGCC	3 cut(s)	462, 539, 578
BspCNI	CTCAG	9 cut(s)	243, 360, 748, 749, 818, 826, 877, 1012, 1069
BspDI	ATCGAT	1 cut(s)	1103
BspFNI	CGCG	7 cut(s)	17, 175, 218, 299, 341, 500, 1247
BspLI	GGNNCC	2 cut(s)	161, 625
BspMI	ACCTGC	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	1373
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	993
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	5 cut(s)	493, 784, 908, 1137, 1142
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	292
BssNAI	GTATAC	1 cut(s)	947
BssNI	GRCGYC	2 cut(s)	302, 495
BssSI	CACGAG	1 cut(s)	1275
Bst1107I	GTATAC	1 cut(s)	947
Bst2BI	CACGAG	1 cut(s)	1275
Bst2UI	CCWGG	3 cut(s)	464, 541, 1318
Bst4CI	ACNGT	4 cut(s)	238, 668, 689, 865
Bst6I	CTCTTC	4 cut(s)	44, 584, 834, 1176
BstACI	GRCGYC	2 cut(s)	302, 495
BstC8I	GCNNGC	4 cut(s)	173, 1272, 1311, 1371
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	645, 657, 925
BstFNI	CGCG	7 cut(s)	17, 175, 218, 299, 341, 500, 1247
BstHHI	GCGC	5 cut(s)	177, 220, 299, 818, 1247
BstMAI	GTCTC	2 cut(s)	100, 794
BstMWI	GCNNNNNNNGC	5 cut(s)	183, 253, 308, 965, 1327
BstNI	CCWGG	3 cut(s)	464, 541, 1318
BstNSI	RCATGY	2 cut(s)	377, 822
BstPAI	GACNNNNGTC	2 cut(s)	342, 628
BstSCI	CCNGG	3 cut(s)	462, 539, 1316
BstSFI	CTRYAG	1 cut(s)	1344
BstUI	CGCG	7 cut(s)	17, 175, 218, 299, 341, 500, 1247
BstV1I	GCAGC	4 cut(s)	234, 1235, 1300, 1353
BstV2I	GAAGAC	1 cut(s)	329
BstZ17I	GTATAC	1 cut(s)	947
Bsu15I	ATCGAT	1 cut(s)	1103
Bsu36I	CCTNAGG	1 cut(s)	805
BsuI	GTATCC	1 cut(s)	1120
BsuRI	GGCC	3 cut(s)	462, 539, 578
BsuTUI	ATCGAT	1 cut(s)	1103
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	3 cut(s)	645, 657, 925
BtsIMutI	CAGTG	4 cut(s)	673, 694, 780, 915
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	173, 1272, 1311, 1371
CaiI	CAGNNNCTG	2 cut(s)	779, 962
CfoI	GCGC	5 cut(s)	177, 220, 299, 818, 1247
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	238, 460, 623
ClaI	ATCGAT	1 cut(s)	1103
CseI	GACGC	4 cut(s)	224, 291, 347, 503
Csp6I	GTAC	3 cut(s)	200, 1098, 1296
CviAII	CATG	4 cut(s)	374, 580, 819, 898
CviQI	GTAC	3 cut(s)	200, 1098, 1296
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	4 cut(s)	44, 584, 834, 1176
EarI	CTCTTC	4 cut(s)	44, 584, 834, 1176
EciI	GGCGGA	4 cut(s)	20, 88, 137, 376
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	2 cut(s)	238, 623
Eco57I	CTGAAG	3 cut(s)	476, 1113, 1200
Eco81I	CCTNAGG	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	3 cut(s)	462, 539, 1316
FaeI	CATG	4 cut(s)	377, 583, 822, 901
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	4 cut(s)	373, 579, 818, 897
FauI	CCCGC	2 cut(s)	266, 304
FblI	GTMKAC	1 cut(s)	946
FokI	GGATG	3 cut(s)	652, 664, 932
FspBI	CTAG	1 cut(s)	1370
GlaI	GCGC	5 cut(s)	176, 219, 298, 817, 1246
HaeIII	GGCC	3 cut(s)	462, 539, 578
HapII	CCGG	2 cut(s)	168, 621
HgaI	GACGC	4 cut(s)	224, 291, 347, 503
HhaI	GCGC	5 cut(s)	177, 220, 299, 818, 1247
Hin1I	GRCGYC	2 cut(s)	302, 495
Hin1II	CATG	4 cut(s)	377, 583, 822, 901
Hin6I	GCGC	5 cut(s)	175, 218, 297, 816, 1245
HinP1I	GCGC	5 cut(s)	175, 218, 297, 816, 1245
HincII	GTYRAC	1 cut(s)	1052
HindII	GTYRAC	1 cut(s)	1052
HinfI	GANTC	9 cut(s)	194, 533, 563, 770, 872, 913, 1007, 1133, 1354
HpaII	CCGG	2 cut(s)	168, 621
HphI	GGTGA	5 cut(s)	124, 157, 580, 622, 809
Hpy166II	GTNNAC	4 cut(s)	46, 241, 947, 1052
Hpy188III	TCNNGA	6 cut(s)	232, 347, 869, 917, 962, 1151
Hpy8I	GTNNAC	4 cut(s)	46, 241, 947, 1052
Hpy99I	CGWCG	7 cut(s)	191, 218, 238, 263, 307, 341, 505
HpyAV	CCTTC	9 cut(s)	50, 262, 301, 433, 451, 466, 475, 565, 589
HpyCH4III	ACNGT	4 cut(s)	238, 668, 689, 865
HpyCH4V	TGCA	3 cut(s)	397, 991, 1270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	183, 253, 308, 965, 1327
Hsp92I	GRCGYC	2 cut(s)	302, 495
Hsp92II	CATG	4 cut(s)	377, 583, 822, 901
HspAI	GCGC	5 cut(s)	175, 218, 297, 816, 1245
LmnI	GCTCC	5 cut(s)	165, 215, 291, 418, 964
Lsp1109I	GCAGC	4 cut(s)	234, 1235, 1300, 1353
LweI	GCATC	1 cut(s)	955
MaeI	CTAG	1 cut(s)	1370
MaeIII	GTNAC	1 cut(s)	775
MluCI	AATT	5 cut(s)	77, 645, 1040, 1201, 1265
MluI	ACGCGT	1 cut(s)	339
MlyI	GAGTC	3 cut(s)	188, 542, 1142
MmeI	TCCRAC	2 cut(s)	237, 540
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	2 cut(s)	1283, 1332
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	2 cut(s)	168, 621
MspR9I	CCNGG	3 cut(s)	464, 541, 1318
Mva1269I	GAATGC	2 cut(s)	385, 622
MvaI	CCWGG	3 cut(s)	464, 541, 1318
MvnI	CGCG	7 cut(s)	17, 175, 218, 299, 341, 500, 1247
MwoI	GCNNNNNNNGC	5 cut(s)	183, 253, 308, 965, 1327
NheI	GCTAGC	1 cut(s)	1369
NlaIII	CATG	4 cut(s)	377, 583, 822, 901
NlaIV	GGNNCC	2 cut(s)	161, 625
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	2 cut(s)	377, 822
PaqCI	CACCTGC	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 195
PctI	GAATGC	2 cut(s)	385, 622
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	6 cut(s)	563, 770, 872, 913, 1007, 1354
PleI	GAGTC	3 cut(s)	188, 541, 1141
PpsI	GAGTC	3 cut(s)	188, 541, 1141
PshAI	GACNNNNGTC	2 cut(s)	342, 628
Psp6I	CCWGG	3 cut(s)	462, 539, 1316
PspGI	CCWGG	3 cut(s)	462, 539, 1316
PspN4I	GGNNCC	2 cut(s)	161, 625
PspPI	GGNCC	3 cut(s)	238, 460, 623
PsrI	GAACNNNNNNTAC	2 cut(s)	937, 969
PstNI	CAGNNNCTG	2 cut(s)	779, 962
RsaI	GTAC	3 cut(s)	201, 1099, 1297
RsaNI	GTAC	3 cut(s)	200, 1098, 1296
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	1283, 1332
Sau96I	GGNCC	3 cut(s)	238, 460, 623
SchI	GAGTC	3 cut(s)	188, 542, 1142
ScrFI	CCNGG	3 cut(s)	464, 541, 1318
SfaNI	GCATC	1 cut(s)	955
SfcI	CTRYAG	1 cut(s)	1344
SinI	GGWCC	2 cut(s)	238, 623
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	5 cut(s)	77, 645, 1040, 1201, 1265
SspMI	CTAG	1 cut(s)	1370
StyD4I	CCNGG	3 cut(s)	462, 539, 1316
TaaI	ACNGT	4 cut(s)	238, 668, 689, 865
TaqI	TCGA	4 cut(s)	305, 336, 632, 1103
TasI	AATT	5 cut(s)	77, 645, 1040, 1201, 1265
TatI	WGTACW	1 cut(s)	1097
TauI	GCSGC	6 cut(s)	104, 160, 223, 302, 500, 1198
TfiI	GAWTC	6 cut(s)	563, 770, 872, 913, 1007, 1354
Tru1I	TTAA	2 cut(s)	1283, 1332
Tru9I	TTAA	2 cut(s)	1283, 1332
TscAI	CASTG	4 cut(s)	673, 694, 780, 915
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	4 cut(s)	247, 1223, 1313, 1366
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	4 cut(s)	656, 848, 869, 1011
TspGWI	ACGGA	3 cut(s)	187, 281, 518
TspRI	CASTG	4 cut(s)	673, 694, 780, 915
VpaK11BI	GGWCC	2 cut(s)	238, 623
XapI	RAATTY	3 cut(s)	77, 645, 1201
XceI	RCATGY	2 cut(s)	377, 822
XmiI	GTMKAC	1 cut(s)	946
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	1 cut(s)	1370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.