Rh1CG267900

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009131
Physical Location & Seq
Forward (+)
53288025 .. 53290559
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG267900.1

Sequence Viewer

Length: 1245 bp
ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAATGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGGACGCGCCACCTCGGCGACGACTCCGTACTCTCCTGCTCGGACGCGGCGCACCACTTCCCGGCGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCGTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGAGGCGTGTCGGGATATGAGCGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGAGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCCGCCACCGAGAAGTATGTCAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGACGTGTTGGATTCCGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGCAAGGCCGTGGTCAAGAATGCCCAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGATAGTGATACAGAGGAAGATGACAGTGATGATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTTGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAGTCTTTTCATACTGAGAAAAATGGCATGGTTGAACCAGTGATTCAGGATGAGAAGATAGCTATACCTTGTTCAGCTCCTGATGCTGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAATTGTGGAAGAATTAATTAGTCAACCTCAGAAGATTCCTAAGTCAGGTGATGGGCAGGGAATTGAAAATACATTGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGAGAACACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTATGCTTGTTGAAACTACTTTATCATGTCATTTTTAGGGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

414

Amino Acids

45.47

Weight (kDa)

5.73

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 87 - 190 4.1e-23 Splicing regulator SDE2, SDE2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 354
AccII CGCG 4 cut(s) 17, 175, 215, 296
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 3 cut(s) 77, 642, 1162
AcuI CTGAAG 3 cut(s) 473, 1098, 1161
AcyI GRCGYC 2 cut(s) 299, 492
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 6 cut(s) 742, 866, 902, 968, 1079, 1210
AjiI CACGTC 1 cut(s) 553
AjnI CCWGG 2 cut(s) 459, 536
AluBI AGCT 4 cut(s) 732, 752, 929, 944
AluI AGCT 4 cut(s) 732, 752, 929, 944
Alw26I GTCTC 2 cut(s) 100, 791
AlwNI CAGNNNCTG 3 cut(s) 451, 776, 947
AoxI GGCC 3 cut(s) 534, 573, 600
ApeKI GCWGC 3 cut(s) 244, 391, 1184
ApoI RAATTY 3 cut(s) 77, 642, 1162
AseI ATTAAT 1 cut(s) 1028
AspLEI GCGC 5 cut(s) 159, 177, 220, 296, 815
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 2 cut(s) 169, 230
AsuHPI GGTGA 4 cut(s) 124, 157, 806, 1073
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 802
BbsI GAAGAC 1 cut(s) 326
BbvCI CCTCAGC 3 cut(s) 248, 365, 753
BbvI GCAGC 3 cut(s) 231, 378, 1196
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 2 cut(s) 461, 538
BciVI GTATCC 1 cut(s) 1105
BcnI CCSGG 2 cut(s) 169, 230
BcoDI GTCTC 2 cut(s) 100, 791
BfaI CTAG 1 cut(s) 977
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 249
BfuI GTATCC 1 cut(s) 1105
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 8 cut(s) 102, 216, 245, 297, 392, 495, 1157, 1185
BlsI GCNGC 8 cut(s) 103, 217, 246, 298, 393, 496, 1158, 1186
Bme1390I CCNGG 4 cut(s) 169, 230, 461, 538
Bme18I GGWCC 1 cut(s) 235
BmgBI CACGTC 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 4 cut(s) 169, 230, 461, 538
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 940
BmuI ACTGGG 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 812, 844
Bpu10I CCTNAGC 3 cut(s) 248, 365, 753
BpuMI CCSGG 2 cut(s) 169, 230
BsaHI GRCGYC 2 cut(s) 299, 492
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 181, 289, 603
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
Bse1I ACTGG 5 cut(s) 490, 781, 905, 1122, 1127
Bse21I CCTNAGG 1 cut(s) 802
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 2 cut(s) 461, 538
BseDI CCNNGG 3 cut(s) 181, 289, 603
BseGI GGATG 3 cut(s) 642, 654, 922
BseLI CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 9 cut(s) 239, 356, 744, 747, 816, 822, 873, 996, 1055
BseNI ACTGG 5 cut(s) 490, 781, 905, 1122, 1127
BseRI GAGGAG 4 cut(s) 152, 275, 428, 542
BseXI GCAGC 3 cut(s) 231, 378, 1196
BseYI CCCAGC 1 cut(s) 618
Bsh1236I CGCG 4 cut(s) 17, 175, 215, 296
BshFI GGCC 3 cut(s) 536, 575, 602
BsiSI CCGG 2 cut(s) 168, 230
BslFI GGGAC 2 cut(s) 184, 503
BslI CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
BsmAI GTCTC 2 cut(s) 100, 791
BsmFI GGGAC 2 cut(s) 184, 503
BsmI GAATGC 2 cut(s) 382, 619
BsnI GGCC 3 cut(s) 536, 575, 602
Bso31I GGTCTC 1 cut(s) 791
BspANI GGCC 3 cut(s) 536, 575, 602
BspCNI CTCAG 9 cut(s) 240, 357, 745, 746, 815, 823, 874, 997, 1054
BspFNI CGCG 4 cut(s) 17, 175, 215, 296
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 791
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 5 cut(s) 490, 781, 905, 1122, 1127
BssECI CCNNGG 3 cut(s) 181, 289, 603
BssNI GRCGYC 2 cut(s) 299, 492
Bst2UI CCWGG 2 cut(s) 461, 538
Bst4CI ACNGT 2 cut(s) 686, 862
Bst6I CTCTTC 5 cut(s) 44, 449, 581, 831, 1137
BstACI GRCGYC 2 cut(s) 299, 492
BstC8I GCNNGC 1 cut(s) 356
BstDSI CCRYGG 2 cut(s) 289, 603
BstENI CCTNNNNNAGG 1 cut(s) 1056
BstF5I GGATG 3 cut(s) 642, 654, 922
BstFNI CGCG 4 cut(s) 17, 175, 215, 296
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 5 cut(s) 159, 177, 220, 296, 815
BstMAI GTCTC 2 cut(s) 100, 791
BstMWI GCNNNNNNNGC 5 cut(s) 156, 183, 250, 305, 950
BstNI CCWGG 2 cut(s) 461, 538
BstNSI RCATGY 2 cut(s) 374, 819
BstSCI CCNGG 4 cut(s) 167, 228, 459, 536
BstSFI CTRYAG 1 cut(s) 392
BstUI CGCG 4 cut(s) 17, 175, 215, 296
BstV1I GCAGC 3 cut(s) 231, 378, 1196
BstV2I GAAGAC 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 802
BsuI GTATCC 1 cut(s) 1105
BsuRI GGCC 3 cut(s) 536, 575, 602
BtgI CCRYGG 2 cut(s) 289, 603
BtrI CACGTC 1 cut(s) 553
BtsCI GGATG 3 cut(s) 642, 654, 922
BtsIMutI CAGTG 4 cut(s) 691, 777, 912, 1137
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 356
CaiI CAGNNNCTG 3 cut(s) 451, 776, 947
CfoI GCGC 5 cut(s) 159, 177, 220, 296, 815
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 4 cut(s) 181, 221, 288, 500
Csp6I GTAC 1 cut(s) 197
CviAII CATG 5 cut(s) 371, 577, 816, 895, 1223
CviQI GTAC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 5 cut(s) 44, 449, 581, 831, 1137
EarI CTCTTC 5 cut(s) 44, 449, 581, 831, 1137
EciI GGCGGA 4 cut(s) 20, 88, 137, 373
Eco31I GGTCTC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 3 cut(s) 473, 1098, 1161
Eco81I CCTNAGG 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 1056
EcoRII CCWGG 2 cut(s) 459, 536
FaeI CATG 5 cut(s) 374, 580, 819, 898, 1226
FaqI GGGAC 2 cut(s) 184, 503
FatI CATG 5 cut(s) 370, 576, 815, 894, 1222
FauI CCCGC 3 cut(s) 263, 301, 347
Fnu4HI GCNGC 8 cut(s) 102, 216, 245, 297, 392, 495, 1157, 1185
FokI GGATG 3 cut(s) 649, 661, 929
Fsp4HI GCNGC 8 cut(s) 102, 216, 245, 297, 392, 495, 1157, 1185
FspBI CTAG 1 cut(s) 977
GlaI GCGC 5 cut(s) 158, 176, 219, 295, 814
GluI GCNGC 8 cut(s) 102, 216, 245, 297, 392, 495, 1157, 1185
GsaI CCCAGC 1 cut(s) 622
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 3 cut(s) 536, 575, 602
HapII CCGG 2 cut(s) 168, 230
HgaI GACGC 4 cut(s) 181, 221, 288, 500
HhaI GCGC 5 cut(s) 159, 177, 220, 296, 815
Hin1I GRCGYC 2 cut(s) 299, 492
Hin1II CATG 5 cut(s) 374, 580, 819, 898, 1226
Hin6I GCGC 5 cut(s) 157, 175, 218, 294, 813
HinP1I GCGC 5 cut(s) 157, 175, 218, 294, 813
HincII GTYRAC 1 cut(s) 1037
HindII GTYRAC 1 cut(s) 1037
HinfI GANTC 9 cut(s) 191, 530, 560, 767, 869, 910, 992, 1048, 1118
HpaII CCGG 2 cut(s) 168, 230
HphI GGTGA 4 cut(s) 124, 157, 806, 1073
Hpy166II GTNNAC 3 cut(s) 46, 238, 1037
Hpy188I TCNGA 8 cut(s) 211, 453, 550, 736, 832, 1044, 1099, 1117
Hpy188III TCNNGA 7 cut(s) 82, 344, 514, 610, 866, 914, 947
Hpy8I GTNNAC 3 cut(s) 46, 238, 1037
Hpy99I CGWCG 3 cut(s) 191, 260, 304
HpyAV CCTTC 8 cut(s) 50, 259, 298, 430, 463, 472, 562, 586
HpyCH4III ACNGT 2 cut(s) 686, 862
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 183, 250, 305, 950
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 2 cut(s) 299, 492
Hsp92II CATG 5 cut(s) 374, 580, 819, 898, 1226
HspAI GCGC 5 cut(s) 157, 175, 218, 294, 813
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 4 cut(s) 288, 415, 442, 949
Lsp1109I GCAGC 3 cut(s) 231, 378, 1196
LweI GCATC 1 cut(s) 940
MaeI CTAG 1 cut(s) 977
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 772
MbiI CCGCTC 1 cut(s) 354
MluCI AATT 7 cut(s) 77, 642, 1014, 1025, 1029, 1074, 1162
MlyI GAGTC 4 cut(s) 185, 539, 878, 1127
MmeI TCCRAC 2 cut(s) 390, 537
MseI TTAA 1 cut(s) 1028
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 2 cut(s) 168, 230
MspR9I CCNGG 4 cut(s) 169, 230, 461, 538
Mva1269I GAATGC 2 cut(s) 382, 619
MvaI CCWGG 2 cut(s) 461, 538
MvnI CGCG 4 cut(s) 17, 175, 215, 296
MwoI GCNNNNNNNGC 5 cut(s) 156, 183, 250, 305, 950
NciI CCSGG 2 cut(s) 169, 230
NlaIII CATG 5 cut(s) 374, 580, 819, 898, 1226
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 2 cut(s) 374, 819
PaqCI CACCTGC 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PctI GAATGC 2 cut(s) 382, 619
PfeI GAWTC 5 cut(s) 560, 767, 910, 992, 1048
PkrI GCNGC 8 cut(s) 103, 217, 246, 298, 393, 496, 1158, 1186
PleI GAGTC 4 cut(s) 185, 538, 877, 1126
PpsI GAGTC 4 cut(s) 185, 538, 877, 1126
PshBI ATTAAT 1 cut(s) 1028
Psp6I CCWGG 2 cut(s) 459, 536
PspFI CCCAGC 1 cut(s) 618
PspGI CCWGG 2 cut(s) 459, 536
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 396
PstNI CAGNNNCTG 3 cut(s) 451, 776, 947
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 1028
SatI GCNGC 8 cut(s) 102, 216, 245, 297, 392, 495, 1157, 1185
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 4 cut(s) 185, 539, 878, 1127
ScrFI CCNGG 4 cut(s) 169, 230, 461, 538
SfaNI GCATC 1 cut(s) 940
SfcI CTRYAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 7 cut(s) 77, 642, 1014, 1025, 1029, 1074, 1162
SspMI CTAG 1 cut(s) 977
StyD4I CCNGG 4 cut(s) 167, 228, 459, 536
TaaI ACNGT 2 cut(s) 686, 862
TaiI ACGT 1 cut(s) 555
TaqI TCGA 3 cut(s) 302, 333, 629
TasI AATT 7 cut(s) 77, 642, 1014, 1025, 1029, 1074, 1162
TauI GCSGC 5 cut(s) 104, 218, 299, 497, 1159
TfiI GAWTC 5 cut(s) 560, 767, 910, 992, 1048
Tru1I TTAA 1 cut(s) 1028
Tru9I TTAA 1 cut(s) 1028
TscAI CASTG 4 cut(s) 691, 777, 912, 1144
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 3 cut(s) 244, 391, 1184
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 4 cut(s) 653, 845, 866, 996
TspGWI ACGGA 3 cut(s) 184, 278, 553
TspRI CASTG 4 cut(s) 691, 777, 912, 1144
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 1 cut(s) 1028
XagI CCTNNNNNAGG 1 cut(s) 1056
XapI RAATTY 3 cut(s) 77, 642, 1162
XceI RCATGY 2 cut(s) 374, 819
XspI CTAG 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.