Rh1BG250000

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009131
Physical Location & Seq
Forward (+)
37891459 .. 37894048
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG250000.1

Sequence Viewer

Length: 1248 bp
ATGGCGGACACCACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAACGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCGCCAGCGCCTCCTCACCGGGACGCGCCAACTCGGCGACGACGACTCCGTACTCTCCTGCTCCGACGCGCCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTTCGTGGCGCGGCGTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCATTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGAGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCTGCGACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCTGTGGTGAAGAATGCCCAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGATAGTGATACCGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTCAAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAATCTATTCATACTGAGAAAAATGGCATGGTTGAACCAGTGATTCAGAATGAGAAGATAGCTATATCTTGTTCAGCTCCTGATGCGGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAAATATGGAAGAATTAGTTAGTCAACCTCAGAAGATTTCTAAGTCAGATGATGGGCAAGGAGTTGAAAGTACATCGATTGTATTCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGTTCAGGAAGAAACAGTTGCTAATGAGAAAACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTATTTGTTGAAACTACTTTATCATGTCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

415

Amino Acids

45.59

Weight (kDa)

5.4

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 84 - 187 1.4e-23 Splicing regulator SDE2, SDE2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 240
AccII CGCG 4 cut(s) 163, 206, 287, 329
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 3 cut(s) 65, 633, 1177
AcuI CTGAAG 3 cut(s) 464, 1089, 1176
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 2 cut(s) 189, 1075
AfiI CCNNNNNNNGG 1 cut(s) 573
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 6 cut(s) 732, 857, 893, 959, 1070, 1223
AjnI CCWGG 2 cut(s) 450, 527
AluBI AGCT 4 cut(s) 723, 743, 920, 935
AluI AGCT 4 cut(s) 723, 743, 920, 935
Alw26I GTCTC 2 cut(s) 88, 782
AlwNI CAGNNNCTG 3 cut(s) 442, 767, 938
AoxI GGCC 2 cut(s) 525, 564
ApeKI GCWGC 4 cut(s) 235, 382, 485, 1199
ApoI RAATTY 3 cut(s) 65, 633, 1177
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 5 cut(s) 147, 165, 208, 287, 806
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 5 cut(s) 112, 145, 568, 610, 797
AsuII TTCGAA 1 cut(s) 1089
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 317
BbvCI CCTCAGC 3 cut(s) 239, 356, 744
BbvI GCAGC 4 cut(s) 222, 369, 472, 1211
BciT130I CCWGG 2 cut(s) 452, 529
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 88, 782
BfaI CTAG 1 cut(s) 968
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 148
BfuAI ACCTGC 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
BlsI GCNGC 9 cut(s) 91, 140, 210, 237, 289, 384, 487, 1173, 1201
Bme1390I CCNGG 3 cut(s) 157, 452, 529
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmrFI CCNGG 3 cut(s) 157, 452, 529
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 931
BmuI ACTGGG 1 cut(s) 486
BoxI GACNNNNGTC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 803, 835
Bpu10I CCTNAGC 3 cut(s) 239, 356, 744
Bpu14I TTCGAA 1 cut(s) 1089
BpuMI CCSGG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 1079
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 5 cut(s) 481, 772, 896, 1113, 1118
Bse21I CCTNAGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 2 cut(s) 452, 529
BseCI ATCGAT 1 cut(s) 1079
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 2 cut(s) 633, 645
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 9 cut(s) 230, 347, 735, 738, 807, 813, 864, 987, 1046
BseNI ACTGG 5 cut(s) 481, 772, 896, 1113, 1118
BseRI GAGGAG 3 cut(s) 140, 419, 533
BseXI GCAGC 4 cut(s) 222, 369, 472, 1211
BseYI CCCAGC 1 cut(s) 609
Bsh1236I CGCG 4 cut(s) 163, 206, 287, 329
BshFI GGCC 2 cut(s) 527, 566
BshVI ATCGAT 1 cut(s) 1079
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 172, 494
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 2 cut(s) 88, 782
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 172, 494
BsmI GAATGC 2 cut(s) 373, 610
BsnI GGCC 2 cut(s) 527, 566
Bso31I GGTCTC 1 cut(s) 782
Bsp119I TTCGAA 1 cut(s) 1089
BspANI GGCC 2 cut(s) 527, 566
BspCNI CTCAG 9 cut(s) 231, 348, 736, 737, 806, 814, 865, 988, 1045
BspDI ATCGAT 1 cut(s) 1079
BspFNI CGCG 4 cut(s) 163, 206, 287, 329
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 1089
BspTNI GGTCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 5 cut(s) 481, 772, 896, 1113, 1118
BssECI CCNNGG 1 cut(s) 663
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 452, 529
Bst4CI ACNGT 4 cut(s) 226, 677, 853, 1138
Bst6I CTCTTC 5 cut(s) 32, 440, 572, 822, 1152
BstACI GRCGYC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 1089
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 633, 645
BstFNI CGCG 4 cut(s) 163, 206, 287, 329
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 5 cut(s) 147, 165, 208, 287, 806
BstMAI GTCTC 2 cut(s) 88, 782
BstMWI GCNNNNNNNGC 5 cut(s) 144, 171, 241, 296, 941
BstNI CCWGG 2 cut(s) 452, 529
BstNSI RCATGY 2 cut(s) 365, 810
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 155, 450, 527
BstSFI CTRYAG 1 cut(s) 383
BstUI CGCG 4 cut(s) 163, 206, 287, 329
BstV1I GCAGC 4 cut(s) 222, 369, 472, 1211
BstV2I GAAGAC 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 1079
Bsu36I CCTNAGG 1 cut(s) 793
BsuRI GGCC 2 cut(s) 527, 566
BsuTUI ATCGAT 1 cut(s) 1079
BtsCI GGATG 2 cut(s) 633, 645
BtsIMutI CAGTG 3 cut(s) 682, 768, 903
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 3 cut(s) 442, 767, 938
CfoI GCGC 5 cut(s) 147, 165, 208, 287, 806
Cfr13I GGNCC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 1079
CseI GACGC 5 cut(s) 169, 212, 279, 335, 491
Csp6I GTAC 2 cut(s) 188, 1074
CviAII CATG 5 cut(s) 362, 568, 807, 886, 1236
CviQI GTAC 2 cut(s) 188, 1074
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 5 cut(s) 32, 440, 572, 822, 1152
EarI CTCTTC 5 cut(s) 32, 440, 572, 822, 1152
EciI GGCGGA 4 cut(s) 20, 76, 125, 364
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 3 cut(s) 464, 1089, 1176
Eco81I CCTNAGG 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 450, 527
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 5 cut(s) 365, 571, 810, 889, 1239
FaqI GGGAC 2 cut(s) 172, 494
FatI CATG 5 cut(s) 361, 567, 806, 885, 1235
FauI CCCGC 2 cut(s) 254, 292
Fnu4HI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
FokI GGATG 2 cut(s) 640, 652
Fsp4HI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
FspBI CTAG 1 cut(s) 968
GlaI GCGC 5 cut(s) 146, 164, 207, 286, 805
GluI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
GsaI CCCAGC 1 cut(s) 613
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 2 cut(s) 527, 566
HapII CCGG 1 cut(s) 156
HgaI GACGC 5 cut(s) 169, 212, 279, 335, 491
HhaI GCGC 5 cut(s) 147, 165, 208, 287, 806
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 5 cut(s) 365, 571, 810, 889, 1239
Hin6I GCGC 5 cut(s) 145, 163, 206, 285, 804
HinP1I GCGC 5 cut(s) 145, 163, 206, 285, 804
HincII GTYRAC 1 cut(s) 1028
HindII GTYRAC 1 cut(s) 1028
HinfI GANTC 9 cut(s) 182, 521, 551, 728, 758, 860, 901, 983, 1109
HpaII CCGG 1 cut(s) 156
HphI GGTGA 5 cut(s) 112, 145, 568, 610, 797
Hpy166II GTNNAC 3 cut(s) 34, 229, 1028
Hpy188I TCNGA 9 cut(s) 202, 444, 541, 727, 823, 906, 1035, 1051, 1108
Hpy188III TCNNGA 6 cut(s) 70, 220, 335, 857, 938, 1127
Hpy8I GTNNAC 3 cut(s) 34, 229, 1028
Hpy99I CGWCG 8 cut(s) 179, 182, 206, 226, 251, 295, 329, 493
HpyAV CCTTC 9 cut(s) 38, 250, 287, 289, 421, 454, 463, 553, 577
HpyCH4III ACNGT 4 cut(s) 226, 677, 853, 1138
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 171, 241, 296, 941
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 5 cut(s) 365, 571, 810, 889, 1239
HspAI GCGC 5 cut(s) 145, 163, 206, 285, 804
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 5 cut(s) 203, 279, 406, 433, 940
Lsp1109I GCAGC 4 cut(s) 222, 369, 472, 1211
LweI GCATC 1 cut(s) 931
MaeI CTAG 1 cut(s) 968
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 763
MluCI AATT 4 cut(s) 65, 633, 1016, 1177
MluI ACGCGT 1 cut(s) 327
MlyI GAGTC 3 cut(s) 176, 530, 1118
MmeI TCCRAC 2 cut(s) 225, 528
MroXI GAANNNNTTC 1 cut(s) 864
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 3 cut(s) 157, 452, 529
Mva1269I GAATGC 2 cut(s) 373, 610
MvaI CCWGG 2 cut(s) 452, 529
MvnI CGCG 4 cut(s) 163, 206, 287, 329
MwoI GCNNNNNNNGC 5 cut(s) 144, 171, 241, 296, 941
NciI CCSGG 1 cut(s) 157
NlaIII CATG 5 cut(s) 365, 571, 810, 889, 1239
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 2 cut(s) 365, 810
NspV TTCGAA 1 cut(s) 1089
PaqCI CACCTGC 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 183
PctI GAATGC 2 cut(s) 373, 610
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 6 cut(s) 551, 728, 758, 860, 901, 983
PkrI GCNGC 9 cut(s) 91, 140, 210, 237, 289, 384, 487, 1173, 1201
PleI GAGTC 3 cut(s) 176, 529, 1117
PpsI GAGTC 3 cut(s) 176, 529, 1117
PshAI GACNNNNGTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 450, 527
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 2 cut(s) 450, 527
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 387
PstNI CAGNNNCTG 3 cut(s) 442, 767, 938
RsaI GTAC 2 cut(s) 189, 1075
RsaNI GTAC 2 cut(s) 188, 1074
RseI CAYNNNNRTG 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 440
SatI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 3 cut(s) 176, 530, 1118
ScrFI CCNGG 3 cut(s) 157, 452, 529
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 1089
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 4 cut(s) 65, 633, 1016, 1177
SspMI CTAG 1 cut(s) 968
StyD4I CCNGG 3 cut(s) 155, 450, 527
TaaI ACNGT 4 cut(s) 226, 677, 853, 1138
TaiI ACGT 1 cut(s) 84
TaqI TCGA 5 cut(s) 293, 324, 620, 1079, 1089
TasI AATT 4 cut(s) 65, 633, 1016, 1177
TatI WGTACW 1 cut(s) 1073
TauI GCSGC 5 cut(s) 92, 141, 211, 290, 1174
TfiI GAWTC 6 cut(s) 551, 728, 758, 860, 901, 983
TscAI CASTG 3 cut(s) 682, 768, 903
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 4 cut(s) 235, 382, 485, 1199
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 4 cut(s) 644, 836, 857, 987
TspGWI ACGGA 2 cut(s) 175, 506
TspRI CASTG 3 cut(s) 682, 768, 903
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 3 cut(s) 65, 633, 1177
XceI RCATGY 2 cut(s) 365, 810
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.