Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009131

Physical Location & Seq

Genomic Coordinates Forward (+)

38309217 .. 38311218

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAGTAGGAAGAGAGTTTTGATAGTTGGAGGCACAGGCTACTTGGGACAACATGTATTGCAAGGCTTTGCAGAGATTCAAGAAACCACTCCTTGTGATCTGGCATTTACCCATCACTCAAGTCCTCCTCCTCAAGCTTTGCTCAATGCATTTCGTAATGTGCTGCCTTTCTCTGTGGATTTGAAGACTGGCAACGGATTTGAAGCCATTTCTCATCAGTTTGGTCCGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCGGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCAGCTATGTCAGTTAATGTGCCATCTTCTCTTGTACTGATCAAGGAAGATGATGAAGTTGTTCCAGTAAATGTTTATGGGAAATCAAAAGTGGCAGCTGAGCAGTTCATTACTGAGAAATGCTCAAACTTTGCAATTTTGAGAAGCAGTATCATCTTTGGGCCACAGACAATCTCACCGGTTTCAAAATCTCTTCCGATTCAGTGGGTTGATGGTGTCCTCTCCAAAGGAAATACAACCGAATTCTTTCATGATGAGTTTCGATGCCCTGTGTATGTAAAGGATGTCGTAGCAATCATACTTGCTTTGTCCAAGACATGGATATCAGAGCCTAAGCAAAGAGAATTGCTACTGAATGACCGGACAGGGTATCCCATGTACAAATGGCTGAGACGGTTGCTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

232

Amino Acids

25.61

Weight (kDa)

6.95

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	5 - 107	3.5e-07	RmlD substrate binding domain
Epimerase	PF01370	6 - 111	4.6e-07	NAD dependent epimerase/dehydratase family
RmlD_sub_bind	PF04321	112 - 210	1.3e-12	RmlD substrate binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06455 AT4G01000 AT4G01000
fragaria_vesca	FvH4_7g16340 FvH4_7g16340
malus_domestica	MD01G1080000.v1.1 MD07G1148800.v1.1
prunus_persica	Prupe.2G187300_v2.0.a1
pyrus_communis	pycom01g10820 pycom01g10830 pycom07g14780
rosa_chinensis	RchiOBHm_Chr1g0359351
rosa_laevigata	RLG00000027877
rosa_multiflora	Rmu_ssc0000358.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297060
rosa_rugosa	Rorug01G0270300 Rorug01G0270400
rosa_samantha	Rh1AG283800 Rh1BG250000 Rh1CG267900 Rh1DG278900
rosa_wichuraiana	Rw1G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	609
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	278, 291
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	2 cut(s)	327, 671
AfiI	CCNNNNNNNGG	1 cut(s)	609
AflIII	ACRYGT	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	80, 184, 203, 477
AluBI	AGCT	3 cut(s)	137, 296, 389
AluI	AGCT	3 cut(s)	137, 296, 389
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	2 cut(s)	278, 291
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	5 cut(s)	163, 251, 290, 293, 386
ApoI	RAATTY	1 cut(s)	533
AsiGI	ACCGGT	1 cut(s)	469
Asp700I	GAANNNNTTC	2 cut(s)	351, 537
AspS9I	GGNCC	2 cut(s)	224, 452
AsuHPI	GGTGA	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	5 cut(s)	150, 238, 277, 305, 398
BccI	CCATC	3 cut(s)	120, 322, 497
BciVI	GTATCC	1 cut(s)	672
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	676
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	672
BisI	GCNGC	5 cut(s)	164, 252, 291, 294, 387
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	5 cut(s)	165, 253, 292, 295, 388
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	224, 452
BmiI	GGNNCC	2 cut(s)	264, 285
BmsI	GCATC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	103, 117
BsaWI	WCCGGW	2 cut(s)	469, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	193, 356
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	381, 396, 671
BseNI	ACTGG	2 cut(s)	193, 356
BseRI	GAGGAG	2 cut(s)	117, 120
BseXI	GCAGC	5 cut(s)	150, 238, 277, 305, 398
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	454
BshTI	ACCGGT	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	470, 652
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	676
BsmBI	CGTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	97, 283, 330
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	3 cut(s)	382, 397, 672
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	264, 285
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	2 cut(s)	278, 291
BsrFI	RCCGGY	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	193, 356
BssAI	RCCGGY	1 cut(s)	469
BssMI	GATC	3 cut(s)	97, 283, 330
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	248, 687
Bst6I	CTCTTC	2 cut(s)	5, 489
BstAUI	TGTACA	1 cut(s)	669
BstDEI	CTNAG	4 cut(s)	390, 405, 624, 680
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	3 cut(s)	100, 286, 333
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	3 cut(s)	97, 283, 330
BstNSI	RCATGY	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	150, 238, 277, 305, 398
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	224, 452
Csp6I	GTAC	2 cut(s)	326, 670
CspAI	ACCGGT	1 cut(s)	469
CviAII	CATG	4 cut(s)	53, 542, 609, 667
CviJI	RGCY	9 cut(s)	39, 66, 137, 206, 296, 389, 454, 622, 679
CviKI_1	RGCY	9 cut(s)	39, 66, 137, 206, 296, 389, 454, 622, 679
CviQI	GTAC	2 cut(s)	326, 670
DdeI	CTNAG	4 cut(s)	390, 405, 624, 680
DpnI	GATC	3 cut(s)	99, 285, 332
DpnII	GATC	3 cut(s)	97, 283, 330
Eam1104I	CTCTTC	2 cut(s)	5, 489
EarI	CTCTTC	2 cut(s)	5, 489
EciI	GGCGGA	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	676
FaeI	CATG	4 cut(s)	56, 545, 612, 670
FaiI	YATR	9 cut(s)	54, 299, 369, 543, 567, 590, 610, 668, 697
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	52, 541, 608, 666
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	5 cut(s)	164, 252, 291, 294, 387
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	5 cut(s)	164, 252, 291, 294, 387
GluI	GCNGC	5 cut(s)	164, 252, 291, 294, 387
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	2 cut(s)	470, 652
Hin1II	CATG	4 cut(s)	56, 545, 612, 670
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	76, 490
HpaII	CCGG	2 cut(s)	470, 652
HphI	GGTGA	1 cut(s)	459
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	489, 619
Hpy188III	TCNNGA	2 cut(s)	80, 542
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	248, 687
HpyCH4V	TGCA	6 cut(s)	61, 71, 149, 254, 293, 425
HpyF3I	CTNAG	4 cut(s)	390, 405, 624, 680
Hsp92II	CATG	4 cut(s)	56, 545, 612, 670
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	97, 283, 330
Lsp1109I	GCAGC	5 cut(s)	150, 238, 277, 305, 398
LweI	GCATC	1 cut(s)	545
MalI	GATC	3 cut(s)	99, 285, 332
MboI	GATC	3 cut(s)	97, 283, 330
MboII	GAAGA	5 cut(s)	22, 196, 309, 350, 476
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	3 cut(s)	426, 533, 635
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	6 cut(s)	23, 135, 138, 141, 276, 521
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	2 cut(s)	351, 537
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	470, 652
NdeII	GATC	3 cut(s)	97, 283, 330
NlaIII	CATG	4 cut(s)	56, 545, 612, 670
NlaIV	GGNNCC	2 cut(s)	264, 285
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	541
PciI	ACATGT	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	351, 537
PfeI	GAWTC	2 cut(s)	76, 490
PflMI	CCANNNNNTGG	1 cut(s)	609
PinAI	ACCGGT	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	165, 253, 292, 295, 388
PscI	ACATGT	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	264, 285
PspPI	GGNCC	2 cut(s)	224, 452
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	327, 671
RsaNI	GTAC	2 cut(s)	326, 670
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	5 cut(s)	164, 252, 291, 294, 387
Sau3AI	GATC	3 cut(s)	97, 283, 330
Sau96I	GGNCC	2 cut(s)	224, 452
SetI	ASST	3 cut(s)	139, 298, 391
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	118, 132
SmoI	CTYRAG	2 cut(s)	118, 132
Sse9I	AATT	3 cut(s)	426, 533, 635
SsiI	CCGC	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	248, 687
TaqI	TCGA	1 cut(s)	553
TasI	AATT	3 cut(s)	426, 533, 635
TatI	WGTACW	2 cut(s)	325, 669
TfiI	GAWTC	2 cut(s)	76, 490
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	500
TseI	GCWGC	5 cut(s)	163, 251, 290, 293, 386
TspDTI	ATGAA	3 cut(s)	360, 388, 530
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	500
Van91I	CCANNNNNTGG	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	351, 537
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.