Rw1G025200

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009131
Physical Location & Seq
Forward (+)
51798685 .. 51801188
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025200.1

Sequence Viewer

Length: 1344 bp
ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAATGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGGACGCGCCACCTCGGCGACGACTCCGTACTCTCCTGCTCGGACGCGGCGCACCACTTCCCGGCGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCGTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGAGGCGTGTCGGGATATGAGCGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGAGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCCGCCACCGAGAAGTATGTCAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCCGACGTGTTGGATTCCGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCCGTGGTCAAGAATGCCCAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGATAGTGATACAGAGGAAGATGACAGTGATGATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTTGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAGTCTTTTCATACTGAGAAAAATGGCATGGTTGAACCAGTGATTCAGGATGAGAAGATAGCTATACCTTGTTCAGCTCCTGATGCTGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAATTGTGGAAGAATTAATTAGTCAACCTCAGAAGATTCCTAAGTCAGGTGATGGGCAGGGAATTGAAAATACATTGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGAGAACACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTTCTTGGCGCGGACAGGTTGAAGTCGGAATTGCAAGCTCGTGGGTTAAAATGTGGGGGTACTTTGCGAGAGCGTGCTGCCAGGCTTTTTATGCTTAAATCTACCCCTATAGAGAAGATTCCAAAGAAGCTGCTCGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

447

Amino Acids

48.97

Weight (kDa)

6.56

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 87 - 190 4.1e-23 Splicing regulator SDE2, SDE2 domain
SDE2_2C PF13297 373 - 446 2.6e-28 Replication stress response SDE2 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 354
AccII CGCG 5 cut(s) 17, 175, 215, 296, 1208
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 3 cut(s) 77, 642, 1162
AcuI CTGAAG 3 cut(s) 473, 1098, 1161
AcyI GRCGYC 2 cut(s) 299, 492
AfaI GTAC 2 cut(s) 198, 1258
AfiI CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 6 cut(s) 742, 866, 902, 968, 1079, 1219
AjiI CACGTC 1 cut(s) 553
AjnI CCWGG 3 cut(s) 459, 536, 1277
AluBI AGCT 6 cut(s) 732, 752, 929, 944, 1235, 1327
AluI AGCT 6 cut(s) 732, 752, 929, 944, 1235, 1327
Alw26I GTCTC 2 cut(s) 100, 791
AlwNI CAGNNNCTG 3 cut(s) 451, 776, 947
AoxI GGCC 3 cut(s) 534, 573, 600
ApeKI GCWGC 5 cut(s) 244, 391, 1184, 1274, 1327
ApoI RAATTY 3 cut(s) 77, 642, 1162
AseI ATTAAT 1 cut(s) 1028
AspLEI GCGC 6 cut(s) 159, 177, 220, 296, 815, 1208
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 2 cut(s) 169, 230
AsuHPI GGTGA 4 cut(s) 124, 157, 806, 1073
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 802
BauI CACGAG 1 cut(s) 1236
BbsI GAAGAC 1 cut(s) 326
BbvCI CCTCAGC 3 cut(s) 248, 365, 753
BbvI GCAGC 5 cut(s) 231, 378, 1196, 1261, 1314
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 3 cut(s) 461, 538, 1279
BciVI GTATCC 1 cut(s) 1105
BcnI CCSGG 2 cut(s) 169, 230
BcoDI GTCTC 2 cut(s) 100, 791
BfaI CTAG 1 cut(s) 977
BfmI CTRYAG 2 cut(s) 392, 1305
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 249
BfuI GTATCC 1 cut(s) 1105
BglI GCCNNNNNGGC 1 cut(s) 183
Bme1390I CCNGG 5 cut(s) 169, 230, 461, 538, 1279
Bme18I GGWCC 1 cut(s) 235
BmgBI CACGTC 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 5 cut(s) 169, 230, 461, 538, 1279
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 940
BmuI ACTGGG 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 812, 844
Bpu10I CCTNAGC 3 cut(s) 248, 365, 753
BpuMI CCSGG 2 cut(s) 169, 230
BsaHI GRCGYC 2 cut(s) 299, 492
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 181, 289, 603
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
Bse1I ACTGG 5 cut(s) 490, 781, 905, 1122, 1127
Bse21I CCTNAGG 1 cut(s) 802
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 3 cut(s) 461, 538, 1279
BseDI CCNNGG 3 cut(s) 181, 289, 603
BseGI GGATG 3 cut(s) 642, 654, 922
BseLI CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 9 cut(s) 239, 356, 744, 747, 816, 822, 873, 996, 1055
BseNI ACTGG 5 cut(s) 490, 781, 905, 1122, 1127
BseRI GAGGAG 4 cut(s) 152, 275, 428, 542
BseXI GCAGC 5 cut(s) 231, 378, 1196, 1261, 1314
BseYI CCCAGC 1 cut(s) 618
Bsh1236I CGCG 5 cut(s) 17, 175, 215, 296, 1208
BshFI GGCC 3 cut(s) 536, 575, 602
BsiSI CCGG 2 cut(s) 168, 230
BslFI GGGAC 2 cut(s) 184, 503
BslI CCNNNNNNNGG 4 cut(s) 229, 295, 582, 1058
BsmAI GTCTC 2 cut(s) 100, 791
BsmFI GGGAC 2 cut(s) 184, 503
BsmI GAATGC 2 cut(s) 382, 619
BsnI GGCC 3 cut(s) 536, 575, 602
Bso31I GGTCTC 1 cut(s) 791
BspANI GGCC 3 cut(s) 536, 575, 602
BspCNI CTCAG 9 cut(s) 240, 357, 745, 746, 815, 823, 874, 997, 1054
BspFNI CGCG 5 cut(s) 17, 175, 215, 296, 1208
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 791
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 5 cut(s) 490, 781, 905, 1122, 1127
BssECI CCNNGG 3 cut(s) 181, 289, 603
BssNI GRCGYC 2 cut(s) 299, 492
BssSI CACGAG 1 cut(s) 1236
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 3 cut(s) 461, 538, 1279
Bst4CI ACNGT 2 cut(s) 686, 862
Bst6I CTCTTC 5 cut(s) 44, 449, 581, 831, 1137
BstACI GRCGYC 2 cut(s) 299, 492
BstC8I GCNNGC 4 cut(s) 356, 1233, 1272, 1332
BstDSI CCRYGG 2 cut(s) 289, 603
BstENI CCTNNNNNAGG 1 cut(s) 1056
BstF5I GGATG 3 cut(s) 642, 654, 922
BstFNI CGCG 5 cut(s) 17, 175, 215, 296, 1208
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 6 cut(s) 159, 177, 220, 296, 815, 1208
BstMAI GTCTC 2 cut(s) 100, 791
BstMWI GCNNNNNNNGC 6 cut(s) 156, 183, 250, 305, 950, 1288
BstNI CCWGG 3 cut(s) 461, 538, 1279
BstNSI RCATGY 2 cut(s) 374, 819
BstSCI CCNGG 5 cut(s) 167, 228, 459, 536, 1277
BstSFI CTRYAG 2 cut(s) 392, 1305
BstUI CGCG 5 cut(s) 17, 175, 215, 296, 1208
BstV1I GCAGC 5 cut(s) 231, 378, 1196, 1261, 1314
BstV2I GAAGAC 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 802
BsuI GTATCC 1 cut(s) 1105
BsuRI GGCC 3 cut(s) 536, 575, 602
BtgI CCRYGG 2 cut(s) 289, 603
BtrI CACGTC 1 cut(s) 553
BtsCI GGATG 3 cut(s) 642, 654, 922
BtsIMutI CAGTG 4 cut(s) 691, 777, 912, 1137
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 4 cut(s) 356, 1233, 1272, 1332
CaiI CAGNNNCTG 3 cut(s) 451, 776, 947
CfoI GCGC 6 cut(s) 159, 177, 220, 296, 815, 1208
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 4 cut(s) 181, 221, 288, 500
Csp6I GTAC 2 cut(s) 197, 1257
CviAII CATG 4 cut(s) 371, 577, 816, 895
CviQI GTAC 2 cut(s) 197, 1257
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 5 cut(s) 44, 449, 581, 831, 1137
EarI CTCTTC 5 cut(s) 44, 449, 581, 831, 1137
EciI GGCGGA 4 cut(s) 20, 88, 137, 373
Eco31I GGTCTC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 3 cut(s) 473, 1098, 1161
Eco81I CCTNAGG 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 1056
EcoRII CCWGG 3 cut(s) 459, 536, 1277
FaeI CATG 4 cut(s) 374, 580, 819, 898
FaqI GGGAC 2 cut(s) 184, 503
FatI CATG 4 cut(s) 370, 576, 815, 894
FauI CCCGC 3 cut(s) 263, 301, 347
FokI GGATG 3 cut(s) 649, 661, 929
FspBI CTAG 1 cut(s) 977
GlaI GCGC 6 cut(s) 158, 176, 219, 295, 814, 1207
GsaI CCCAGC 1 cut(s) 622
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 3 cut(s) 536, 575, 602
HapII CCGG 2 cut(s) 168, 230
HgaI GACGC 4 cut(s) 181, 221, 288, 500
HhaI GCGC 6 cut(s) 159, 177, 220, 296, 815, 1208
Hin1I GRCGYC 2 cut(s) 299, 492
Hin1II CATG 4 cut(s) 374, 580, 819, 898
Hin6I GCGC 6 cut(s) 157, 175, 218, 294, 813, 1206
HinP1I GCGC 6 cut(s) 157, 175, 218, 294, 813, 1206
HincII GTYRAC 1 cut(s) 1037
HindII GTYRAC 1 cut(s) 1037
HpaII CCGG 2 cut(s) 168, 230
HphI GGTGA 4 cut(s) 124, 157, 806, 1073
Hpy166II GTNNAC 3 cut(s) 46, 238, 1037
Hpy188I TCNGA 9 cut(s) 211, 453, 550, 736, 832, 1044, 1099, 1117, 1225
Hpy188III TCNNGA 7 cut(s) 82, 344, 514, 610, 866, 914, 947
Hpy8I GTNNAC 3 cut(s) 46, 238, 1037
Hpy99I CGWCG 4 cut(s) 191, 260, 304, 554
HpyAV CCTTC 8 cut(s) 50, 259, 298, 430, 463, 472, 562, 586
HpyCH4III ACNGT 2 cut(s) 686, 862
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 2 cut(s) 394, 1231
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 183, 250, 305, 950, 1288
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 2 cut(s) 299, 492
Hsp92II CATG 4 cut(s) 374, 580, 819, 898
HspAI GCGC 6 cut(s) 157, 175, 218, 294, 813, 1206
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 4 cut(s) 288, 415, 442, 949
Lsp1109I GCAGC 5 cut(s) 231, 378, 1196, 1261, 1314
LweI GCATC 1 cut(s) 940
MaeI CTAG 1 cut(s) 977
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 772
MbiI CCGCTC 1 cut(s) 354
MluCI AATT 8 cut(s) 77, 642, 1014, 1025, 1029, 1074, 1162, 1226
MlyI GAGTC 4 cut(s) 185, 539, 878, 1127
MmeI TCCRAC 4 cut(s) 390, 537, 573, 1203
MseI TTAA 3 cut(s) 1028, 1244, 1293
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 2 cut(s) 168, 230
MspR9I CCNGG 5 cut(s) 169, 230, 461, 538, 1279
Mva1269I GAATGC 2 cut(s) 382, 619
MvaI CCWGG 3 cut(s) 461, 538, 1279
MvnI CGCG 5 cut(s) 17, 175, 215, 296, 1208
MwoI GCNNNNNNNGC 6 cut(s) 156, 183, 250, 305, 950, 1288
NciI CCSGG 2 cut(s) 169, 230
NlaIII CATG 4 cut(s) 374, 580, 819, 898
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 2 cut(s) 374, 819
PaqCI CACCTGC 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PctI GAATGC 2 cut(s) 382, 619
PfeI GAWTC 6 cut(s) 560, 767, 910, 992, 1048, 1315
PleI GAGTC 4 cut(s) 185, 538, 877, 1126
PpsI GAGTC 4 cut(s) 185, 538, 877, 1126
PshBI ATTAAT 1 cut(s) 1028
Psp6I CCWGG 3 cut(s) 459, 536, 1277
PspFI CCCAGC 1 cut(s) 618
PspGI CCWGG 3 cut(s) 459, 536, 1277
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 396
PstNI CAGNNNCTG 3 cut(s) 451, 776, 947
RsaI GTAC 2 cut(s) 198, 1258
RsaNI GTAC 2 cut(s) 197, 1257
RseI CAYNNNNRTG 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 449
SaqAI TTAA 3 cut(s) 1028, 1244, 1293
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 4 cut(s) 185, 539, 878, 1127
ScrFI CCNGG 5 cut(s) 169, 230, 461, 538, 1279
SfaNI GCATC 1 cut(s) 940
SfcI CTRYAG 2 cut(s) 392, 1305
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 8 cut(s) 77, 642, 1014, 1025, 1029, 1074, 1162, 1226
SspMI CTAG 1 cut(s) 977
StyD4I CCNGG 5 cut(s) 167, 228, 459, 536, 1277
TaaI ACNGT 2 cut(s) 686, 862
TaiI ACGT 1 cut(s) 555
TaqI TCGA 3 cut(s) 302, 333, 629
TasI AATT 8 cut(s) 77, 642, 1014, 1025, 1029, 1074, 1162, 1226
TauI GCSGC 5 cut(s) 104, 218, 299, 497, 1159
TfiI GAWTC 6 cut(s) 560, 767, 910, 992, 1048, 1315
Tru1I TTAA 3 cut(s) 1028, 1244, 1293
Tru9I TTAA 3 cut(s) 1028, 1244, 1293
TscAI CASTG 4 cut(s) 691, 777, 912, 1144
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 5 cut(s) 244, 391, 1184, 1274, 1327
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 4 cut(s) 653, 845, 866, 996
TspGWI ACGGA 3 cut(s) 184, 278, 553
TspRI CASTG 4 cut(s) 691, 777, 912, 1144
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 1 cut(s) 1028
XagI CCTNNNNNAGG 1 cut(s) 1056
XapI RAATTY 3 cut(s) 77, 642, 1162
XceI RCATGY 2 cut(s) 374, 819
XspI CTAG 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.