pycom07g14780

Protein SDE2 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
16825058 .. 16827460
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14780.3

Sequence Viewer

Length: 1419 bp
ATGGCGGAATCCACCGTCACCAAATCCAGCACCTACAACTTATTCGTCAACCTTTTGGAGGGCAAAACCCTAACCCTAAAATTCACAACCCCGGAGATCCCCGCCGCTTCCATCAAGCAACTCTTATACAAAATCACCAAAATACCCCTCCAGCACCAGCGCCTCGTCACCGGGACTCGCCAACTCCAGGATGATTCCGTCATCTCGTGCTCCTCCTCCGACGTGCCGGACTTCCCAACGGTGCATCTTCTGCTCCGGCTCGTTGGTGGAAAGGGCGGGTTCGGATCGCTGCTGCGTGGGGCGGCGACGAAGGCCGGGCAGAAGAAGACGAGTAATTTCGACGCGTGTCGCGATATGAGTGGTCGGAGGCTGCGGCATGTTAATGCGGAGAAGAAGCTTGAGGAGTGGAGGGCTGAGGAAGAAGAGAGGATGCTCGAAAAGATGGCGGAGGATTATTTGAAGCGTATTGCAAAGAAGGGGAAAGTGGGAACTGGGGACGATAAGGCTGAGAAGTATGTGGCCAAGTATAGGGAGCAATCGGAACGCTGTGTTTCGGAGGTTTTGGATTCGGTTAAGGAGGCTGTTAAGGGAAAGCGTAAGGGGGCGGCCAAGGAACCGGTGGCAGATTCGAAAAGACTGAAAATTTGGATGGGCAAGAGGAAAATGGGCGAAAGTGATTCAGAGGATGACGACAGTGATAATGAAGATGAAAATGAGAAATCCATTGTATTAAATAATGGGAATAACTCAGATTCAAGTAAAGAAACTGAGAGAAGTTTGGATTCTGTGACTGGTAGGAAACAAGATGGTGAGATCTCAGGTGGGGGCTCAAGTGAAAGTGGCTCGGAGGAAGAGAAAGAGATGGTTGTGCAGGGAGCAGAACCTTTTGGTGGAGGCCCTGGTCAAGAATCTCTTGATAACGAGAAGAATGAGATGGTTGAACCAGTGATTCCTGAAGAGAAGATGGTTAGTACTGCAAGTGTTACTTGTTCAGAGCCTGATACGGTTTCGGGAGTTGAAGCAGATCAAGATGGAAAGATAGGTTGCAGTGGACCTGAGATGGGAAATCTGAAGGAAGTAGGTGGTCAGTCCCAGAAGGTTCCTAGTTCAGGGCATGGGCAAGAAATTGAAAGTGCATCAGTTGTTGCTGAAGCCAATGGTTCTTCAGAGTCCAATTCAGGAGTTCAGGAGGAAACAGTTGCGAGTGGAAACACTCTACAGATAGAGAAGCCACTGAATTTTGATGAGTACAGTTCCGCGGCTGAAATGGAGGTTCTTGGCCGGGAAAGGTTAAAGTCTGAACTGCAAACTCGTGGGTTAAAATGCGGGGGTACTCTGCGGGAGCAAGCTGCGAGGCTTTTCATGCTAAAAACTACCCCGATTGAAAAGATTCCAAAGAAGCTCCTTGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

51.29

Weight (kDa)

5.33

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 344, 351, 1259
AclWI GGATC 2 cut(s) 91, 292
AcoI YGGCCR 3 cut(s) 519, 606, 1279
AcsI RAATTY 3 cut(s) 80, 642, 1237
AcuI CTGAAG 4 cut(s) 975, 1091, 1149, 1170
AfaI GTAC 3 cut(s) 973, 1250, 1333
AfiI CCNNNNNNNGG 6 cut(s) 58, 187, 528, 890, 1061, 1109
AflIII ACRYGT 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 616
AgsI TTSAA 6 cut(s) 460, 756, 941, 1019, 1130, 1385
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 2 cut(s) 186, 898
AluBI AGCT 3 cut(s) 397, 1349, 1402
AluI AGCT 3 cut(s) 397, 1349, 1402
Alw21I GWGCWC 1 cut(s) 212
AlwI GGATC 2 cut(s) 91, 292
AlwNI CAGNNNCTG 1 cut(s) 998
AoxI GGCC 5 cut(s) 312, 519, 606, 895, 1279
ApeKI GCWGC 4 cut(s) 289, 292, 370, 1349
ApoI RAATTY 3 cut(s) 80, 642, 1237
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AsiGI ACCGGT 1 cut(s) 616
Asp700I GAANNNNTTC 1 cut(s) 1389
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 896, 1052
AsuC2I CCSGG 4 cut(s) 92, 172, 316, 1283
AsuHPI GGTGA 4 cut(s) 10, 127, 160, 821
AsuII TTCGAA 1 cut(s) 629
AvaII GGWCC 1 cut(s) 1052
BalI TGGCCA 1 cut(s) 521
BanII GRGCYC 1 cut(s) 830
BauI CACGAG 2 cut(s) 205, 1311
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 276, 279, 357, 1336
BccI CCATC 9 cut(s) 119, 436, 643, 800, 856, 928, 958, 1025, 1054
BciT130I CCWGG 2 cut(s) 188, 900
BcnI CCSGG 4 cut(s) 92, 172, 316, 1283
BfaI CTAG 1 cut(s) 1104
BfmI CTRYAG 1 cut(s) 1217
BfoI RGCGCY 1 cut(s) 163
BglII AGATCT 1 cut(s) 813
BisI GCNGC 9 cut(s) 105, 290, 293, 303, 371, 374, 606, 1260, 1350
BlsI GCNGC 9 cut(s) 106, 291, 294, 304, 372, 375, 607, 1261, 1351
BmcAI AGTACT 1 cut(s) 973
Bme1390I CCNGG 6 cut(s) 92, 172, 188, 316, 900, 1283
Bme18I GGWCC 1 cut(s) 1052
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 896, 1052
BmiI GGNNCC 2 cut(s) 615, 1101
BmrFI CCNGG 6 cut(s) 92, 172, 188, 316, 900, 1283
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 3 cut(s) 253, 420, 1145
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 134, 170
Bpu10I CCTNAGC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 419, 814
BpuMI CCSGG 4 cut(s) 92, 172, 316, 1283
BsaJI CCNNGG 4 cut(s) 90, 609, 898, 1257
BsaWI WCCGGW 1 cut(s) 616
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 187, 528, 890, 1061, 1109
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 3 cut(s) 496, 796, 944
BseBI CCWGG 2 cut(s) 188, 900
BseDI CCNNGG 4 cut(s) 90, 609, 898, 1257
BseGI GGATG 4 cut(s) 196, 435, 654, 691
BseLI CCNNNNNNNGG 6 cut(s) 58, 187, 528, 890, 1061, 1109
BseMII CTCAG 6 cut(s) 405, 498, 759, 762, 831, 1047
BseNI ACTGG 3 cut(s) 496, 796, 944
BseRI GAGGAG 3 cut(s) 202, 205, 416
BseXI GCAGC 4 cut(s) 276, 279, 357, 1336
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 3 cut(s) 344, 351, 1259
BshFI GGCC 5 cut(s) 314, 521, 608, 897, 1281
BshTI ACCGGT 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 7 cut(s) 92, 171, 227, 256, 315, 617, 1282
BslFI GGGAC 3 cut(s) 187, 509, 1075
BslI CCNNNNNNNGG 6 cut(s) 58, 187, 528, 890, 1061, 1109
BsmFI GGGAC 3 cut(s) 187, 509, 1075
BsnI GGCC 5 cut(s) 314, 521, 608, 897, 1281
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 2 cut(s) 212, 830
Bsp143I GATC 4 cut(s) 96, 284, 813, 1024
Bsp68I TCGCGA 1 cut(s) 351
BspANI GGCC 5 cut(s) 314, 521, 608, 897, 1281
BspCNI CTCAG 6 cut(s) 406, 499, 760, 761, 830, 1048
BspFNI CGCG 3 cut(s) 344, 351, 1259
BspLI GGNNCC 2 cut(s) 615, 1101
BspPI GGATC 2 cut(s) 91, 292
BspT104I TTCGAA 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 3 cut(s) 496, 796, 944
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 4 cut(s) 90, 609, 898, 1257
BssMI GATC 4 cut(s) 96, 284, 813, 1024
BssSI CACGAG 2 cut(s) 205, 1311
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 2 cut(s) 205, 1311
Bst2UI CCWGG 2 cut(s) 188, 900
Bst4CI ACNGT 6 cut(s) 16, 241, 695, 1006, 1198, 1253
Bst6I CTCTTC 3 cut(s) 417, 846, 951
BstAPI GCANNNNNTGC 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 1347
BstDEI CTNAG 6 cut(s) 414, 507, 748, 768, 817, 1056
BstDSI CCRYGG 1 cut(s) 1257
BstENI CCTNNNNNAGG 2 cut(s) 56, 1107
BstF5I GGATG 4 cut(s) 196, 435, 654, 691
BstFNI CGCG 3 cut(s) 344, 351, 1259
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 99, 287, 816, 1027
BstMBI GATC 4 cut(s) 96, 284, 813, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 250, 311, 1363
BstNI CCWGG 2 cut(s) 188, 900
BstNSI RCATGY 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 6 cut(s) 90, 170, 186, 314, 898, 1281
BstSFI CTRYAG 1 cut(s) 1217
BstUI CGCG 3 cut(s) 344, 351, 1259
BstV1I GCAGC 4 cut(s) 276, 279, 357, 1336
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 96, 813
BstYI RGATCY 2 cut(s) 96, 813
BsuRI GGCC 5 cut(s) 314, 521, 608, 897, 1281
BtgI CCRYGG 1 cut(s) 1257
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 4 cut(s) 196, 435, 654, 691
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 4 cut(s) 700, 951, 1054, 1232
BtuMI TCGCGA 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 1347
CaiI CAGNNNCTG 1 cut(s) 998
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 2 cut(s) 896, 1052
Cfr42I CCGCGG 1 cut(s) 1260
CseI GACGC 1 cut(s) 350
Csp6I GTAC 3 cut(s) 972, 1249, 1332
CspAI ACCGGT 1 cut(s) 616
CviAII CATG 3 cut(s) 377, 1115, 1363
CviQI GTAC 3 cut(s) 972, 1249, 1332
DdeI CTNAG 6 cut(s) 414, 507, 748, 768, 817, 1056
DpnI GATC 4 cut(s) 98, 286, 815, 1026
DpnII GATC 4 cut(s) 96, 284, 813, 1024
EaeI YGGCCR 3 cut(s) 519, 606, 1279
Eam1104I CTCTTC 3 cut(s) 417, 846, 951
EarI CTCTTC 3 cut(s) 417, 846, 951
EciI GGCGGA 2 cut(s) 20, 461
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 830
Eco47I GGWCC 1 cut(s) 1052
Eco57I CTGAAG 4 cut(s) 975, 1091, 1149, 1170
EcoNI CCTNNNNNAGG 2 cut(s) 56, 1107
EcoO109I RGGNCCY 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 186, 898
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 830
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 3 cut(s) 380, 1118, 1366
FaiI YATR 7 cut(s) 127, 356, 378, 516, 528, 1116, 1364
FalI AAGNNNNNCTT 6 cut(s) 107, 139, 897, 929, 970, 1002
FaqI GGGAC 3 cut(s) 187, 509, 1075
FatI CATG 3 cut(s) 376, 1114, 1362
FauI CCCGC 4 cut(s) 109, 269, 1319, 1332
Fnu4HI GCNGC 9 cut(s) 105, 290, 293, 303, 371, 374, 606, 1260, 1350
FokI GGATG 4 cut(s) 203, 442, 661, 698
FriOI GRGCYC 1 cut(s) 830
Fsp4HI GCNGC 9 cut(s) 105, 290, 293, 303, 371, 374, 606, 1260, 1350
FspBI CTAG 1 cut(s) 1104
GlaI GCGC 1 cut(s) 161
GluI GCNGC 9 cut(s) 105, 290, 293, 303, 371, 374, 606, 1260, 1350
GsuI CTGGAG 2 cut(s) 134, 170
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 5 cut(s) 314, 521, 608, 897, 1281
HapII CCGG 7 cut(s) 92, 171, 227, 256, 315, 617, 1282
HgaI GACGC 1 cut(s) 350
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 380, 1118, 1366
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 395
HpaII CCGG 7 cut(s) 92, 171, 227, 256, 315, 617, 1282
HphI GGTGA 4 cut(s) 10, 127, 160, 821
Hpy166II GTNNAC 2 cut(s) 49, 1052
Hpy188III TCNNGA 8 cut(s) 350, 905, 914, 953, 1011, 1028, 1179, 1187
Hpy8I GTNNAC 2 cut(s) 49, 1052
Hpy99I CGWCG 3 cut(s) 224, 310, 344
HpyAV CCTTC 4 cut(s) 304, 469, 1066, 1090
HpyCH4III ACNGT 6 cut(s) 16, 241, 695, 1006, 1198, 1253
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 8 cut(s) 244, 470, 871, 977, 1047, 1136, 1306, 1409
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 311, 1363
HpyF3I CTNAG 6 cut(s) 414, 507, 748, 768, 817, 1056
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 380, 1118, 1366
HspAI GCGC 1 cut(s) 160
KspI CCGCGG 1 cut(s) 1260
Kzo9I GATC 4 cut(s) 96, 284, 813, 1024
LmnI GCTCC 6 cut(s) 215, 258, 532, 875, 1342, 1407
Lsp1109I GCAGC 4 cut(s) 276, 279, 357, 1336
LweI GCATC 3 cut(s) 253, 420, 1145
MaeI CTAG 1 cut(s) 1104
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 4 cut(s) 16, 166, 787, 982
MalI GATC 4 cut(s) 98, 286, 815, 1026
MboI GATC 4 cut(s) 96, 284, 813, 1024
MflI RGATCY 2 cut(s) 96, 813
MhlI GDGCHC 2 cut(s) 212, 830
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 6 cut(s) 80, 334, 642, 1125, 1174, 1237
MluI ACGCGT 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 2 cut(s) 169, 1178
MmeI TCCRAC 2 cut(s) 243, 344
Mox20I TGGCCA 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 1389
MscI TGGCCA 1 cut(s) 521
MseI TTAA 6 cut(s) 381, 573, 585, 731, 1292, 1319
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 1259
MspI CCGG 7 cut(s) 92, 171, 227, 256, 315, 617, 1282
MspR9I CCNGG 6 cut(s) 92, 172, 188, 316, 900, 1283
MvaI CCWGG 2 cut(s) 188, 900
MvnI CGCG 3 cut(s) 344, 351, 1259
MwoI GCNNNNNNNGC 3 cut(s) 250, 311, 1363
NciI CCSGG 4 cut(s) 92, 172, 316, 1283
NdeII GATC 4 cut(s) 96, 284, 813, 1024
NlaIII CATG 3 cut(s) 380, 1118, 1366
NlaIV GGNNCC 2 cut(s) 615, 1101
NmuCI GTSAC 3 cut(s) 16, 166, 787
NruI TCGCGA 1 cut(s) 351
NspI RCATGY 1 cut(s) 380
NspV TTCGAA 1 cut(s) 629
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 1389
PfoI TCCNGGA 1 cut(s) 186
PinAI ACCGGT 1 cut(s) 616
PkrI GCNGC 9 cut(s) 106, 291, 294, 304, 372, 375, 607, 1261, 1351
PleI GAGTC 2 cut(s) 169, 1177
PpsI GAGTC 2 cut(s) 169, 1177
PshAI GACNNNNGTC 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 186, 898
PspGI CCWGG 2 cut(s) 186, 898
PspN4I GGNNCC 2 cut(s) 615, 1101
PspPI GGNCC 2 cut(s) 896, 1052
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 2 cut(s) 96, 813
RruI TCGCGA 1 cut(s) 351
RsaI GTAC 3 cut(s) 973, 1250, 1333
RsaNI GTAC 3 cut(s) 972, 1249, 1332
RseI CAYNNNNRTG 1 cut(s) 381
SacII CCGCGG 1 cut(s) 1260
SaqAI TTAA 6 cut(s) 381, 573, 585, 731, 1292, 1319
SatI GCNGC 9 cut(s) 105, 290, 293, 303, 371, 374, 606, 1260, 1350
Sau3AI GATC 4 cut(s) 96, 284, 813, 1024
Sau96I GGNCC 2 cut(s) 896, 1052
ScaI AGTACT 1 cut(s) 973
SchI GAGTC 2 cut(s) 169, 1178
ScrFI CCNGG 6 cut(s) 92, 172, 188, 316, 900, 1283
SduI GDGCHC 2 cut(s) 212, 830
SfaNI GCATC 3 cut(s) 253, 420, 1145
SfcI CTRYAG 1 cut(s) 1217
Sfr303I CCGCGG 1 cut(s) 1260
SfuI TTCGAA 1 cut(s) 629
SgrBI CCGCGG 1 cut(s) 1260
SinI GGWCC 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 398, 829
SmoI CTYRAG 2 cut(s) 398, 829
Sse9I AATT 6 cut(s) 80, 334, 642, 1125, 1174, 1237
SspMI CTAG 1 cut(s) 1104
StyD4I CCNGG 6 cut(s) 90, 170, 186, 314, 898, 1281
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 6 cut(s) 16, 241, 695, 1006, 1198, 1253
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 339, 435, 629
TasI AATT 6 cut(s) 80, 334, 642, 1125, 1174, 1237
TatI WGTACW 2 cut(s) 971, 1248
TauI GCSGC 5 cut(s) 107, 305, 376, 608, 1262
Tru1I TTAA 6 cut(s) 381, 573, 585, 731, 1292, 1319
Tru9I TTAA 6 cut(s) 381, 573, 585, 731, 1292, 1319
TscAI CASTG 4 cut(s) 700, 951, 1054, 1239
TseFI GTSAC 3 cut(s) 16, 166, 787
TseI GCWGC 4 cut(s) 289, 292, 370, 1349
Tsp45I GTSAC 3 cut(s) 16, 166, 787
TspDTI ATGAA 3 cut(s) 717, 723, 1351
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 4 cut(s) 700, 951, 1054, 1239
VpaK11BI GGWCC 1 cut(s) 1052
XagI CCTNNNNNAGG 2 cut(s) 56, 1107
XapI RAATTY 3 cut(s) 80, 642, 1237
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 1389
XspI CTAG 1 cut(s) 1104
ZrmI AGTACT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.