Rh1DG278900

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009131
Physical Location & Seq
Forward (+)
50055570 .. 50058159
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG278900.1

Sequence Viewer

Length: 1248 bp
ATGGCGGACACCACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAACGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCGCCAGCGCCTCCTCACCGGGACGCGCCAACTCGGCGACGACGACTCCGTACTCTCCTGCTCCGACGCGCCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTTCGTGGCGCGGCGTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCATTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGAGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCTGCGACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCTGTGGTGAAGAATGCCCAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGATAGTGATACCGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTCAAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAATCTATTCATACTGAGAAAAATGGCATGGTTGAACCAGTGATTCAGAATGAGAAGATAGCTATATCTTGTTCAGCTCCTGATGCGGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAAATATGGAAGAATTAGTTAGTCAACCTCAGAAGATTTCTAAGTCAGATGATGGGCAAGGAGTTGAAAGTACATCGATTGTATTCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGTTCAGGAAGAAACAGTTGCTAATGAGAAAACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTATTTGTTGAAACTACTTTATCATGTCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

415

Amino Acids

45.59

Weight (kDa)

5.4

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 84 - 187 1.4e-23 Splicing regulator SDE2, SDE2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 240
AccII CGCG 4 cut(s) 163, 206, 287, 329
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 3 cut(s) 65, 633, 1177
AcuI CTGAAG 3 cut(s) 464, 1089, 1176
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 2 cut(s) 189, 1075
AfiI CCNNNNNNNGG 1 cut(s) 573
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 6 cut(s) 732, 857, 893, 959, 1070, 1223
AjnI CCWGG 2 cut(s) 450, 527
AluBI AGCT 4 cut(s) 723, 743, 920, 935
AluI AGCT 4 cut(s) 723, 743, 920, 935
Alw26I GTCTC 2 cut(s) 88, 782
AlwNI CAGNNNCTG 3 cut(s) 442, 767, 938
AoxI GGCC 2 cut(s) 525, 564
ApeKI GCWGC 4 cut(s) 235, 382, 485, 1199
ApoI RAATTY 3 cut(s) 65, 633, 1177
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 5 cut(s) 147, 165, 208, 287, 806
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 5 cut(s) 112, 145, 568, 610, 797
AsuII TTCGAA 1 cut(s) 1089
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 317
BbvCI CCTCAGC 3 cut(s) 239, 356, 744
BbvI GCAGC 4 cut(s) 222, 369, 472, 1211
BciT130I CCWGG 2 cut(s) 452, 529
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 88, 782
BfaI CTAG 1 cut(s) 968
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 148
BfuAI ACCTGC 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
BlsI GCNGC 9 cut(s) 91, 140, 210, 237, 289, 384, 487, 1173, 1201
Bme1390I CCNGG 3 cut(s) 157, 452, 529
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmrFI CCNGG 3 cut(s) 157, 452, 529
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 931
BmuI ACTGGG 1 cut(s) 486
BoxI GACNNNNGTC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 803, 835
Bpu10I CCTNAGC 3 cut(s) 239, 356, 744
Bpu14I TTCGAA 1 cut(s) 1089
BpuMI CCSGG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 1079
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 5 cut(s) 481, 772, 896, 1113, 1118
Bse21I CCTNAGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 2 cut(s) 452, 529
BseCI ATCGAT 1 cut(s) 1079
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 2 cut(s) 633, 645
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 9 cut(s) 230, 347, 735, 738, 807, 813, 864, 987, 1046
BseNI ACTGG 5 cut(s) 481, 772, 896, 1113, 1118
BseRI GAGGAG 3 cut(s) 140, 419, 533
BseXI GCAGC 4 cut(s) 222, 369, 472, 1211
BseYI CCCAGC 1 cut(s) 609
Bsh1236I CGCG 4 cut(s) 163, 206, 287, 329
BshFI GGCC 2 cut(s) 527, 566
BshVI ATCGAT 1 cut(s) 1079
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 172, 494
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 2 cut(s) 88, 782
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 172, 494
BsmI GAATGC 2 cut(s) 373, 610
BsnI GGCC 2 cut(s) 527, 566
Bso31I GGTCTC 1 cut(s) 782
Bsp119I TTCGAA 1 cut(s) 1089
BspANI GGCC 2 cut(s) 527, 566
BspCNI CTCAG 9 cut(s) 231, 348, 736, 737, 806, 814, 865, 988, 1045
BspDI ATCGAT 1 cut(s) 1079
BspFNI CGCG 4 cut(s) 163, 206, 287, 329
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 1089
BspTNI GGTCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 5 cut(s) 481, 772, 896, 1113, 1118
BssECI CCNNGG 1 cut(s) 663
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 452, 529
Bst4CI ACNGT 4 cut(s) 226, 677, 853, 1138
Bst6I CTCTTC 5 cut(s) 32, 440, 572, 822, 1152
BstACI GRCGYC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 1089
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 633, 645
BstFNI CGCG 4 cut(s) 163, 206, 287, 329
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 5 cut(s) 147, 165, 208, 287, 806
BstMAI GTCTC 2 cut(s) 88, 782
BstMWI GCNNNNNNNGC 5 cut(s) 144, 171, 241, 296, 941
BstNI CCWGG 2 cut(s) 452, 529
BstNSI RCATGY 2 cut(s) 365, 810
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 155, 450, 527
BstSFI CTRYAG 1 cut(s) 383
BstUI CGCG 4 cut(s) 163, 206, 287, 329
BstV1I GCAGC 4 cut(s) 222, 369, 472, 1211
BstV2I GAAGAC 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 1079
Bsu36I CCTNAGG 1 cut(s) 793
BsuRI GGCC 2 cut(s) 527, 566
BsuTUI ATCGAT 1 cut(s) 1079
BtsCI GGATG 2 cut(s) 633, 645
BtsIMutI CAGTG 3 cut(s) 682, 768, 903
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 3 cut(s) 442, 767, 938
CfoI GCGC 5 cut(s) 147, 165, 208, 287, 806
Cfr13I GGNCC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 1079
CseI GACGC 5 cut(s) 169, 212, 279, 335, 491
Csp6I GTAC 2 cut(s) 188, 1074
CviAII CATG 5 cut(s) 362, 568, 807, 886, 1236
CviQI GTAC 2 cut(s) 188, 1074
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 5 cut(s) 32, 440, 572, 822, 1152
EarI CTCTTC 5 cut(s) 32, 440, 572, 822, 1152
EciI GGCGGA 4 cut(s) 20, 76, 125, 364
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 3 cut(s) 464, 1089, 1176
Eco81I CCTNAGG 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 450, 527
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 5 cut(s) 365, 571, 810, 889, 1239
FaqI GGGAC 2 cut(s) 172, 494
FatI CATG 5 cut(s) 361, 567, 806, 885, 1235
FauI CCCGC 2 cut(s) 254, 292
Fnu4HI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
FokI GGATG 2 cut(s) 640, 652
Fsp4HI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
FspBI CTAG 1 cut(s) 968
GlaI GCGC 5 cut(s) 146, 164, 207, 286, 805
GluI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
GsaI CCCAGC 1 cut(s) 613
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 2 cut(s) 527, 566
HapII CCGG 1 cut(s) 156
HgaI GACGC 5 cut(s) 169, 212, 279, 335, 491
HhaI GCGC 5 cut(s) 147, 165, 208, 287, 806
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 5 cut(s) 365, 571, 810, 889, 1239
Hin6I GCGC 5 cut(s) 145, 163, 206, 285, 804
HinP1I GCGC 5 cut(s) 145, 163, 206, 285, 804
HincII GTYRAC 1 cut(s) 1028
HindII GTYRAC 1 cut(s) 1028
HinfI GANTC 9 cut(s) 182, 521, 551, 728, 758, 860, 901, 983, 1109
HpaII CCGG 1 cut(s) 156
HphI GGTGA 5 cut(s) 112, 145, 568, 610, 797
Hpy166II GTNNAC 3 cut(s) 34, 229, 1028
Hpy188I TCNGA 9 cut(s) 202, 444, 541, 727, 823, 906, 1035, 1051, 1108
Hpy188III TCNNGA 6 cut(s) 70, 220, 335, 857, 938, 1127
Hpy8I GTNNAC 3 cut(s) 34, 229, 1028
Hpy99I CGWCG 8 cut(s) 179, 182, 206, 226, 251, 295, 329, 493
HpyAV CCTTC 9 cut(s) 38, 250, 287, 289, 421, 454, 463, 553, 577
HpyCH4III ACNGT 4 cut(s) 226, 677, 853, 1138
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 171, 241, 296, 941
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 5 cut(s) 365, 571, 810, 889, 1239
HspAI GCGC 5 cut(s) 145, 163, 206, 285, 804
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 5 cut(s) 203, 279, 406, 433, 940
Lsp1109I GCAGC 4 cut(s) 222, 369, 472, 1211
LweI GCATC 1 cut(s) 931
MaeI CTAG 1 cut(s) 968
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 763
MluCI AATT 4 cut(s) 65, 633, 1016, 1177
MluI ACGCGT 1 cut(s) 327
MlyI GAGTC 3 cut(s) 176, 530, 1118
MmeI TCCRAC 2 cut(s) 225, 528
MroXI GAANNNNTTC 1 cut(s) 864
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 3 cut(s) 157, 452, 529
Mva1269I GAATGC 2 cut(s) 373, 610
MvaI CCWGG 2 cut(s) 452, 529
MvnI CGCG 4 cut(s) 163, 206, 287, 329
MwoI GCNNNNNNNGC 5 cut(s) 144, 171, 241, 296, 941
NciI CCSGG 1 cut(s) 157
NlaIII CATG 5 cut(s) 365, 571, 810, 889, 1239
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 2 cut(s) 365, 810
NspV TTCGAA 1 cut(s) 1089
PaqCI CACCTGC 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 183
PctI GAATGC 2 cut(s) 373, 610
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 6 cut(s) 551, 728, 758, 860, 901, 983
PkrI GCNGC 9 cut(s) 91, 140, 210, 237, 289, 384, 487, 1173, 1201
PleI GAGTC 3 cut(s) 176, 529, 1117
PpsI GAGTC 3 cut(s) 176, 529, 1117
PshAI GACNNNNGTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 450, 527
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 2 cut(s) 450, 527
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 387
PstNI CAGNNNCTG 3 cut(s) 442, 767, 938
RsaI GTAC 2 cut(s) 189, 1075
RsaNI GTAC 2 cut(s) 188, 1074
RseI CAYNNNNRTG 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 440
SatI GCNGC 9 cut(s) 90, 139, 209, 236, 288, 383, 486, 1172, 1200
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 3 cut(s) 176, 530, 1118
ScrFI CCNGG 3 cut(s) 157, 452, 529
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 1089
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 4 cut(s) 65, 633, 1016, 1177
SspMI CTAG 1 cut(s) 968
StyD4I CCNGG 3 cut(s) 155, 450, 527
TaaI ACNGT 4 cut(s) 226, 677, 853, 1138
TaiI ACGT 1 cut(s) 84
TaqI TCGA 5 cut(s) 293, 324, 620, 1079, 1089
TasI AATT 4 cut(s) 65, 633, 1016, 1177
TatI WGTACW 1 cut(s) 1073
TauI GCSGC 5 cut(s) 92, 141, 211, 290, 1174
TfiI GAWTC 6 cut(s) 551, 728, 758, 860, 901, 983
TscAI CASTG 3 cut(s) 682, 768, 903
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 4 cut(s) 235, 382, 485, 1199
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 4 cut(s) 644, 836, 857, 987
TspGWI ACGGA 2 cut(s) 175, 506
TspRI CASTG 3 cut(s) 682, 768, 903
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 3 cut(s) 65, 633, 1177
XceI RCATGY 2 cut(s) 365, 810
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.