RchiOBHm_Chr1g0359351

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009131
Physical Location & Seq
Forward (+)
51346983 .. 51349534
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58441

Sequence Viewer

Length: 1350 bp
ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAATGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGGACGCGCCACCTCGGCGACGACGACGACTCCGTGCTCTCCTGCACCGACGCGGCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGAAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCCTCGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGGGCCTGGCGAAGAAGGGCAAGAAGGGAACTGGGGACGCCGCCACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCCGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCCGTGGTGAAGAATGCCCAGCCCAAGTCGAAAAGGATCAAAATTTGGATGGGAAGAAATGATAGTGATACAGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTTGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCGCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAATCTTTGCATACTGAGAAAAATGGCATGGTTGAACCAGTGATTCAGGATGAGAAGATAGCTATACCTTGTTCAGCTCCTGATGCTGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAATTGTGGAAGAATTAATTAGTCAACCTCAGAAGATTCCCAAGTCAGGTGATGGGCAGGGAATTGAAAGTACATTGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGAGAACACTGAAAAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTTCTTGGCGCGGAAAAGTTGAAGTTGGAATTGCAAGCTCGTGGGTTAAAATGTGGGGGTACTTTGCGAGAGCGTGCTGCCAGGCTTTTTATGCTTAAATCTACCCCTATAGAGAAGATTCCAAAGAAGCTGCTGGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

449

Amino Acids

49.15

Weight (kDa)

6.79

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 89 - 192 3.2e-23 Splicing regulator SDE2, SDE2 domain
SDE2_2C PF13297 374 - 448 5.6e-27 Replication stress response SDE2 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccII CGCG 6 cut(s) 17, 175, 221, 302, 344, 1214
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 3 cut(s) 77, 648, 1168
AcuI CTGAAG 2 cut(s) 479, 1104
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 1090, 1264
AfiI CCNNNNNNNGG 3 cut(s) 301, 588, 1064
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 6 cut(s) 748, 872, 908, 974, 1085, 1225
AjnI CCWGG 3 cut(s) 465, 542, 1283
AluBI AGCT 6 cut(s) 738, 758, 935, 950, 1241, 1333
AluI AGCT 6 cut(s) 738, 758, 935, 950, 1241, 1333
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 100, 797
AlwI GGATC 1 cut(s) 650
AlwNI CAGNNNCTG 3 cut(s) 457, 782, 953
AoxI GGCC 5 cut(s) 303, 463, 540, 579, 606
ApeKI GCWGC 5 cut(s) 250, 397, 1190, 1280, 1333
ApoI RAATTY 3 cut(s) 77, 648, 1168
AseI ATTAAT 1 cut(s) 1034
AspLEI GCGC 6 cut(s) 159, 177, 226, 302, 821, 1214
AspS9I GGNCC 2 cut(s) 241, 463
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 6 cut(s) 124, 157, 583, 625, 812, 1079
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 808
BauI CACGAG 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 3 cut(s) 254, 371, 759
BbvI GCAGC 5 cut(s) 237, 384, 1202, 1267, 1320
BceAI ACGGC 1 cut(s) 593
BciT130I CCWGG 3 cut(s) 467, 544, 1285
BciVI GTATCC 1 cut(s) 1111
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 100, 797
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 2 cut(s) 398, 1311
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 1 cut(s) 1111
BglI GCCNNNNNGGC 2 cut(s) 183, 311
Bme1390I CCNGG 4 cut(s) 169, 467, 544, 1285
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 241, 463
BmrFI CCNGG 4 cut(s) 169, 467, 544, 1285
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 946
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 818, 850
Bpu10I CCTNAGC 3 cut(s) 254, 371, 759
BpuMI CCSGG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 5 cut(s) 181, 295, 504, 555, 609
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 588, 1064
Bse1I ACTGG 5 cut(s) 496, 787, 911, 1128, 1133
Bse21I CCTNAGG 1 cut(s) 808
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 3 cut(s) 467, 544, 1285
BseDI CCNNGG 5 cut(s) 181, 295, 504, 555, 609
BseGI GGATG 2 cut(s) 660, 928
BseLI CCNNNNNNNGG 3 cut(s) 301, 588, 1064
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 9 cut(s) 245, 362, 750, 753, 822, 828, 879, 1002, 1061
BseNI ACTGG 5 cut(s) 496, 787, 911, 1128, 1133
BseRI GAGGAG 4 cut(s) 152, 281, 434, 548
BseXI GCAGC 5 cut(s) 237, 384, 1202, 1267, 1320
BseYI CCCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 6 cut(s) 17, 175, 221, 302, 344, 1214
BshFI GGCC 5 cut(s) 305, 465, 542, 581, 608
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 184, 509
BslI CCNNNNNNNGG 3 cut(s) 301, 588, 1064
BsmAI GTCTC 2 cut(s) 100, 797
BsmFI GGGAC 2 cut(s) 184, 509
BsmI GAATGC 2 cut(s) 388, 625
BsnI GGCC 5 cut(s) 305, 465, 542, 581, 608
Bso31I GGTCTC 1 cut(s) 797
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 642
BspANI GGCC 5 cut(s) 305, 465, 542, 581, 608
BspCNI CTCAG 9 cut(s) 246, 363, 751, 752, 821, 829, 880, 1003, 1060
BspFNI CGCG 6 cut(s) 17, 175, 221, 302, 344, 1214
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 5 cut(s) 496, 787, 911, 1128, 1133
BssECI CCNNGG 5 cut(s) 181, 295, 504, 555, 609
BssMI GATC 1 cut(s) 642
BssNI GRCGYC 1 cut(s) 498
BssSI CACGAG 1 cut(s) 1242
Bst2BI CACGAG 1 cut(s) 1242
Bst2UI CCWGG 3 cut(s) 467, 544, 1285
Bst4CI ACNGT 3 cut(s) 241, 692, 868
Bst6I CTCTTC 3 cut(s) 44, 587, 837
BstACI GRCGYC 1 cut(s) 498
BstC8I GCNNGC 3 cut(s) 1239, 1278, 1338
BstDEI CTNAG 9 cut(s) 254, 371, 739, 759, 808, 837, 888, 1011, 1047
BstDSI CCRYGG 3 cut(s) 295, 504, 609
BstF5I GGATG 2 cut(s) 660, 928
BstFNI CGCG 6 cut(s) 17, 175, 221, 302, 344, 1214
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 6 cut(s) 159, 177, 226, 302, 821, 1214
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 2 cut(s) 100, 797
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 6 cut(s) 156, 183, 256, 311, 956, 1294
BstNI CCWGG 3 cut(s) 467, 544, 1285
BstNSI RCATGY 2 cut(s) 380, 825
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 4 cut(s) 167, 465, 542, 1283
BstSFI CTRYAG 2 cut(s) 398, 1311
BstUI CGCG 6 cut(s) 17, 175, 221, 302, 344, 1214
BstV1I GCAGC 5 cut(s) 237, 384, 1202, 1267, 1320
BstV2I GAAGAC 1 cut(s) 332
Bsu36I CCTNAGG 1 cut(s) 808
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 5 cut(s) 305, 465, 542, 581, 608
BtgI CCRYGG 3 cut(s) 295, 504, 609
BtsCI GGATG 2 cut(s) 660, 928
BtsIMutI CAGTG 4 cut(s) 697, 783, 918, 1143
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 1239, 1278, 1338
CaiI CAGNNNCTG 3 cut(s) 457, 782, 953
CfoI GCGC 6 cut(s) 159, 177, 226, 302, 821, 1214
Cfr13I GGNCC 2 cut(s) 241, 463
CseI GACGC 4 cut(s) 181, 227, 350, 506
Csp6I GTAC 2 cut(s) 1089, 1263
CviAII CATG 4 cut(s) 377, 583, 822, 901
CviQI GTAC 2 cut(s) 1089, 1263
DdeI CTNAG 9 cut(s) 254, 371, 739, 759, 808, 837, 888, 1011, 1047
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 44, 587, 837
EarI CTCTTC 3 cut(s) 44, 587, 837
EciI GGCGGA 4 cut(s) 20, 88, 137, 379
Eco31I GGTCTC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 479, 1104
Eco81I CCTNAGG 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 465, 542, 1283
FaeI CATG 4 cut(s) 380, 586, 825, 904
FaqI GGGAC 2 cut(s) 184, 509
FatI CATG 4 cut(s) 376, 582, 821, 900
FauI CCCGC 2 cut(s) 269, 307
FokI GGATG 2 cut(s) 667, 935
FspBI CTAG 1 cut(s) 983
GlaI GCGC 6 cut(s) 158, 176, 225, 301, 820, 1213
GsaI CCCAGC 1 cut(s) 628
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 5 cut(s) 305, 465, 542, 581, 608
HapII CCGG 1 cut(s) 168
HgaI GACGC 4 cut(s) 181, 227, 350, 506
HhaI GCGC 6 cut(s) 159, 177, 226, 302, 821, 1214
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 4 cut(s) 380, 586, 825, 904
Hin6I GCGC 6 cut(s) 157, 175, 224, 300, 819, 1212
HinP1I GCGC 6 cut(s) 157, 175, 224, 300, 819, 1212
HincII GTYRAC 1 cut(s) 1043
HindII GTYRAC 1 cut(s) 1043
HpaII CCGG 1 cut(s) 168
HphI GGTGA 6 cut(s) 124, 157, 583, 625, 812, 1079
Hpy166II GTNNAC 3 cut(s) 46, 244, 1043
Hpy188I TCNGA 7 cut(s) 459, 556, 742, 838, 1050, 1105, 1123
Hpy188III TCNNGA 6 cut(s) 82, 235, 350, 872, 920, 953
Hpy8I GTNNAC 3 cut(s) 46, 244, 1043
Hpy99I CGWCG 7 cut(s) 191, 194, 197, 221, 241, 266, 344
HpyAV CCTTC 8 cut(s) 50, 304, 436, 454, 469, 478, 568, 592
HpyCH4III ACNGT 3 cut(s) 241, 692, 868
HpyCH4V TGCA 4 cut(s) 213, 400, 883, 1237
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 183, 256, 311, 956, 1294
HpyF3I CTNAG 9 cut(s) 254, 371, 739, 759, 808, 837, 888, 1011, 1047
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 4 cut(s) 380, 586, 825, 904
HspAI GCGC 6 cut(s) 157, 175, 224, 300, 819, 1212
Kzo9I GATC 1 cut(s) 642
LmnI GCTCC 4 cut(s) 294, 421, 448, 955
Lsp1109I GCAGC 5 cut(s) 237, 384, 1202, 1267, 1320
LweI GCATC 1 cut(s) 946
MaeI CTAG 1 cut(s) 983
MaeIII GTNAC 1 cut(s) 778
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 8 cut(s) 77, 648, 1020, 1031, 1035, 1080, 1168, 1232
MluI ACGCGT 1 cut(s) 342
MlyI GAGTC 3 cut(s) 191, 545, 1133
MmeI TCCRAC 3 cut(s) 396, 543, 1209
MseI TTAA 3 cut(s) 1034, 1250, 1299
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 4 cut(s) 169, 467, 544, 1285
Mva1269I GAATGC 2 cut(s) 388, 625
MvaI CCWGG 3 cut(s) 467, 544, 1285
MvnI CGCG 6 cut(s) 17, 175, 221, 302, 344, 1214
MwoI GCNNNNNNNGC 6 cut(s) 156, 183, 256, 311, 956, 1294
NciI CCSGG 1 cut(s) 169
NdeII GATC 1 cut(s) 642
NlaIII CATG 4 cut(s) 380, 586, 825, 904
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 2 cut(s) 380, 825
PaqCI CACCTGC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 198
PctI GAATGC 2 cut(s) 388, 625
PfeI GAWTC 7 cut(s) 566, 773, 875, 916, 998, 1054, 1321
PleI GAGTC 3 cut(s) 191, 544, 1132
PpsI GAGTC 3 cut(s) 191, 544, 1132
PshAI GACNNNNGTC 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 1034
Psp6I CCWGG 3 cut(s) 465, 542, 1283
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 3 cut(s) 465, 542, 1283
PspPI GGNCC 2 cut(s) 241, 463
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 3 cut(s) 457, 782, 953
RsaI GTAC 2 cut(s) 1090, 1264
RsaNI GTAC 2 cut(s) 1089, 1263
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 3 cut(s) 1034, 1250, 1299
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 2 cut(s) 241, 463
SchI GAGTC 3 cut(s) 191, 545, 1133
ScrFI CCNGG 4 cut(s) 169, 467, 544, 1285
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 2 cut(s) 398, 1311
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 8 cut(s) 77, 648, 1020, 1031, 1035, 1080, 1168, 1232
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 4 cut(s) 167, 465, 542, 1283
TaaI ACNGT 3 cut(s) 241, 692, 868
TaqI TCGA 3 cut(s) 308, 339, 635
TasI AATT 8 cut(s) 77, 648, 1020, 1031, 1035, 1080, 1168, 1232
TatI WGTACW 1 cut(s) 1088
TauI GCSGC 5 cut(s) 104, 224, 305, 503, 1165
TfiI GAWTC 7 cut(s) 566, 773, 875, 916, 998, 1054, 1321
Tru1I TTAA 3 cut(s) 1034, 1250, 1299
Tru9I TTAA 3 cut(s) 1034, 1250, 1299
TscAI CASTG 4 cut(s) 697, 783, 918, 1150
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 5 cut(s) 250, 397, 1190, 1280, 1333
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 2 cut(s) 851, 1002
TspGWI ACGGA 3 cut(s) 190, 284, 521
TspRI CASTG 4 cut(s) 697, 783, 918, 1150
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 1034
XapI RAATTY 3 cut(s) 77, 648, 1168
XceI RCATGY 2 cut(s) 380, 825
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.