pycom01g10830

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009131
Physical Location & Seq
Forward (+)
11611015 .. 11611955
941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10830.2

Sequence Viewer

Length: 528 bp
ATGCCCTGGTCAAGGATCGATCTTGATATTGAGAAGAATGAGATGGTTGGACCAGTGATTTCCGAAGAGAAGATAGTTTGGAGTGCAAGTGTTACTTGTTCAGATCCTGATGTGGTTTCGGGAGCTGAAGCAGAGCAAGATAGAAAGATAGGTTGCAATGGACCTGAGATGGGAAATTTGGAGAAAGTAGTTGGTCAATCTGAGAAGGTTTCTAGTTCAGGGCATGGGCAAGAAATTGAAAGTGCATCACTTGTTGCTGAAGCCAATGGTTCTTCAGAGTCCAATCCAGAAGTTCGGGAGGAAACAGTTGCGAGTGGAGACACTGCAGTGATGGAAAAGCCACTGAATTTTGATGAGTATAATTCAGCAGCAGAAATGGAGGTTCTTGGCCGGGAAAGGTTAAAGTCTGAACTGCAAACTCGTGGGTTAAAATGTGGGGGTACTCTACAGGAGCAAGCTGCGAGGCTTTTCATGCTAAAAACTACCCCAATCGAGAAGATTCCAAAGAAGCTCCTTGCAAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

176

Amino Acids

18.98

Weight (kDa)

4.76

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 98
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 2 cut(s) 175, 346
AcuI CTGAAG 3 cut(s) 147, 258, 279
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 12, 170
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 3 cut(s) 125, 458, 511
AluI AGCT 3 cut(s) 125, 458, 511
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 2 cut(s) 23, 98
AlwNI CAGNNNCTG 1 cut(s) 107
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 368, 458
ApoI RAATTY 2 cut(s) 175, 346
AspS9I GGNCC 2 cut(s) 50, 161
AsuC2I CCSGG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 50, 161
BauI CACGAG 1 cut(s) 420
BbvI GCAGC 2 cut(s) 380, 445
BccI CCATC 3 cut(s) 37, 163, 325
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 324, 446
BisI GCNGC 2 cut(s) 369, 459
BlsI GCNGC 2 cut(s) 370, 460
Bme1390I CCNGG 2 cut(s) 7, 392
Bme18I GGWCC 2 cut(s) 50, 161
BmgT120I GGNCC 2 cut(s) 50, 161
BmrFI CCNGG 2 cut(s) 7, 392
BmsI GCATC 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 170
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 7
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 5
BseLI CCNNNNNNNGG 2 cut(s) 12, 170
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 156, 192
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 380, 445
BshFI GGCC 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 18
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 12, 170
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 15, 19, 103
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 157, 193
BspDI ATCGAT 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 2 cut(s) 23, 98
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 3 cut(s) 15, 19, 103
BssSI CACGAG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 165, 201
BstENI CCTNNNNNAGG 1 cut(s) 10
BstKTI GATC 3 cut(s) 18, 22, 106
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 3 cut(s) 15, 19, 103
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 5, 390
BstSFI CTRYAG 2 cut(s) 324, 446
BstV1I GCAGC 2 cut(s) 380, 445
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 18
BtsI GCAGTG 2 cut(s) 321, 333
BtsIMutI CAGTG 4 cut(s) 60, 321, 333, 341
Cac8I GCNNGC 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 50, 161
ClaI ATCGAT 1 cut(s) 18
Csp6I GTAC 1 cut(s) 441
CviAII CATG 2 cut(s) 224, 472
CviJI RGCY 7 cut(s) 125, 263, 340, 390, 458, 466, 511
CviKI_1 RGCY 7 cut(s) 125, 263, 340, 390, 458, 466, 511
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 2 cut(s) 165, 201
DpnI GATC 3 cut(s) 17, 21, 105
DpnII GATC 3 cut(s) 15, 19, 103
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 50, 161
Eco57I CTGAAG 3 cut(s) 147, 258, 279
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 227, 475
FaiI YATR 3 cut(s) 225, 360, 473
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 2 cut(s) 223, 471
Fnu4HI GCNGC 2 cut(s) 369, 459
Fsp4HI GCNGC 2 cut(s) 369, 459
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 369, 459
HaeIII GGCC 1 cut(s) 390
HapII CCGG 1 cut(s) 391
Hin1II CATG 2 cut(s) 227, 475
HinfI GANTC 2 cut(s) 278, 499
HpaII CCGG 1 cut(s) 391
Hpy188I TCNGA 5 cut(s) 64, 103, 202, 277, 409
Hpy188III TCNNGA 6 cut(s) 23, 107, 120, 287, 296, 493
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 6 cut(s) 86, 156, 245, 326, 415, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpyF3I CTNAG 2 cut(s) 165, 201
Hsp92II CATG 2 cut(s) 227, 475
Kzo9I GATC 3 cut(s) 15, 19, 103
LmnI GCTCC 3 cut(s) 122, 451, 516
LpnPI CCDG 8 cut(s) 19, 66, 120, 177, 204, 300, 404, 434
Lsp1109I GCAGC 2 cut(s) 380, 445
LweI GCATC 1 cut(s) 254
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 17, 21, 105
MboI GATC 3 cut(s) 15, 19, 103
MboII GAAGA 5 cut(s) 46, 77, 82, 264, 508
MflI RGATCY 1 cut(s) 103
MluCI AATT 4 cut(s) 175, 234, 346, 361
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 3 cut(s) 292, 373, 456
MseI TTAA 2 cut(s) 401, 428
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 2 cut(s) 7, 392
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 392
NdeII GATC 3 cut(s) 15, 19, 103
NlaIII CATG 2 cut(s) 227, 475
OliI CACNNNNGTG 1 cut(s) 326
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 2 cut(s) 370, 460
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspPI GGNCC 2 cut(s) 50, 161
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 2 cut(s) 401, 428
SatI GCNGC 2 cut(s) 369, 459
Sau3AI GATC 3 cut(s) 15, 19, 103
Sau96I GGNCC 2 cut(s) 50, 161
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 7, 392
SetI ASST 8 cut(s) 127, 154, 166, 210, 384, 401, 460, 513
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 2 cut(s) 324, 446
SinI GGWCC 2 cut(s) 50, 161
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 4 cut(s) 175, 234, 346, 361
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 5, 390
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 2 cut(s) 18, 492
TasI AATT 4 cut(s) 175, 234, 346, 361
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 401, 428
Tru9I TTAA 2 cut(s) 401, 428
TscAI CASTG 4 cut(s) 60, 328, 333, 348
TseI GCWGC 2 cut(s) 368, 458
TspDTI ATGAA 1 cut(s) 460
TspRI CASTG 4 cut(s) 60, 328, 333, 348
VpaK11BI GGWCC 2 cut(s) 50, 161
XagI CCTNNNNNAGG 1 cut(s) 10
XapI RAATTY 2 cut(s) 175, 346
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.