Rorug01G0270300

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009131
Physical Location & Seq
Forward (+)
38294454 .. 38296775
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0270300.1

Sequence Viewer

Length: 822 bp
ATGGGTTCCTTGTCTGGAATCCTTCAACGCCCTCTAATCGCCGCCGCCGCTGTTGGCTTTGCTTCTTTTTCTTCCGACTTCCCTCATACTGCCCTCTCACAAATCCAACTCCAACGACTCCTCCTCGGATTTATCTACTTCAACAACAACAACTTTCTCTATCACTCTGCACACTTGGCCAGAGCGCCCAACCCAACTCCATATAAACATGATACATCATCATCTGCTTCCGTCCCTGACGTCTCCTACAGATGGCATTTGCCTGAGCTAAATGCTCTTGATGTTTCCGGCACCTCTGATTGTTCATCTGCAAAGATGAGGACTGTGGTCGTTTTGCTGGGATGGTTAGGAGCAAAGCAAAAGCATCTCAAGAGGTATGCCGACTGGTATACTTCCCAGGGCTTTCACGTCATTACCTTTACTTTACCCATGGCTGACATTCTCAAATACCAGCCTGGTGGTAAAGTCGAACACCACATTGACCTGCTTGTCAGTCATTTGGCTGATTGGTTAGAAGAGGAGCAGGGAAAGAACCTGCTTTTTCATACTTTTAGCAACACCGGATGGTTAACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGCACGATCCTTCTGTAATGGGCAGGATTCGGGGCTGCATTGTGGATTCCGCACCTGTTGCAGCACCTGACCCGCAGGCTTGTTTTGAAAGTTCATTCATTTATCTGCGATCCACATTTGTAGAGATGGGTGAAGCAGTCAAGGTAGTGGTTCCGGAGTCTGTTCTAAAGAAGAGGAAGAAAGAGGAGGAATGGGCCTTGGCAAAGAAGCAGGGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

273

Amino Acids

30.46

Weight (kDa)

8.34

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 108 - 238 1.2e-34 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 488
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 2 cut(s) 492, 543
AccB1I GGYRCC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 5 cut(s) 42, 45, 48, 651, 674
AclWI GGATC 2 cut(s) 602, 705
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 3 cut(s) 26, 142, 689
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 396, 454
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 2 cut(s) 602, 705
AlwNI CAGNNNCTG 1 cut(s) 668
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 2 cut(s) 177, 795
ApeKI GCWGC 2 cut(s) 636, 662
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 743
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 623, 674
BccI CCATC 4 cut(s) 246, 336, 558, 721
BciT130I CCWGG 2 cut(s) 398, 456
BcoDI GTCTC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 2 cut(s) 492, 543
BisI GCNGC 5 cut(s) 42, 45, 48, 637, 663
BlsI GCNGC 5 cut(s) 43, 46, 49, 638, 664
Bme1390I CCNGG 2 cut(s) 398, 456
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 3 cut(s) 7, 292, 753
BmrFI CCNGG 2 cut(s) 398, 456
BmsI GCATC 1 cut(s) 373
BoxI GACNNNNGTC 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 124, 396, 397, 429, 798
BsaWI WCCGGW 2 cut(s) 560, 754
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 389
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 2 cut(s) 398, 456
BseDI CCNNGG 5 cut(s) 124, 396, 397, 429, 798
BseGI GGATG 2 cut(s) 347, 569
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 4 cut(s) 110, 113, 533, 800
BseXI GCAGC 2 cut(s) 623, 674
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 2 cut(s) 179, 797
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 3 cut(s) 288, 561, 755
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 2 cut(s) 179, 797
Bsp13I TCCGGA 1 cut(s) 754
Bsp143I GATC 2 cut(s) 607, 710
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 5 cut(s) 42, 45, 48, 651, 674
BspANI GGCC 2 cut(s) 179, 797
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 7, 292, 753
BspMI ACCTGC 2 cut(s) 492, 543
BspPI GGATC 2 cut(s) 602, 705
BspT107I GGYRCC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 5 cut(s) 124, 396, 397, 429, 798
BssMI GATC 2 cut(s) 607, 710
BssNAI GTATAC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 429, 798
Bst1107I GTATAC 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 398, 456
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 2 cut(s) 510, 767
BstACI GRCGYC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 347, 569
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 610, 713
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 607, 710
BstMWI GCNNNNNNNGC 3 cut(s) 47, 176, 659
BstNI CCWGG 2 cut(s) 398, 456
BstPAI GACNNNNGTC 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 396, 454
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 623, 674
BstXI CCANNNNNNTGG 1 cut(s) 458
BstZ17I GTATAC 1 cut(s) 390
BsuRI GGCC 2 cut(s) 179, 797
BtgI CCRYGG 1 cut(s) 429
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 2 cut(s) 347, 569
BveI ACCTGC 2 cut(s) 492, 543
Cac8I GCNNGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 795
CviAII CATG 2 cut(s) 209, 430
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 609, 712
DpnII GATC 2 cut(s) 607, 710
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 510, 767
EarI CTCTTC 2 cut(s) 510, 767
Eco130I CCWWGG 2 cut(s) 429, 798
EcoRII CCWGG 2 cut(s) 396, 454
EcoT14I CCWWGG 2 cut(s) 429, 798
ErhI CCWWGG 2 cut(s) 429, 798
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 2 cut(s) 212, 433
FaiI YATR 9 cut(s) 87, 202, 204, 210, 378, 390, 431, 546, 576
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 208, 429
FauI CCCGC 1 cut(s) 681
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 5 cut(s) 42, 45, 48, 637, 663
FokI GGATG 2 cut(s) 354, 576
Fsp4HI GCNGC 5 cut(s) 42, 45, 48, 637, 663
GlaI GCGC 1 cut(s) 186
GluI GCNGC 5 cut(s) 42, 45, 48, 637, 663
GsaI CCCAGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 2 cut(s) 179, 797
HapII CCGG 3 cut(s) 288, 561, 755
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 212, 433
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HinfI GANTC 5 cut(s) 18, 117, 628, 647, 758
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 3 cut(s) 288, 561, 755
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 2 cut(s) 390, 570
Hpy188I TCNGA 3 cut(s) 76, 128, 298
Hpy188III TCNNGA 5 cut(s) 15, 278, 370, 598, 755
Hpy8I GTNNAC 2 cut(s) 390, 570
HpyAV CCTTC 2 cut(s) 32, 621
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 3 cut(s) 240, 408, 572
HpyCH4V TGCA 4 cut(s) 170, 311, 639, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 176, 659
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 3 cut(s) 240, 408, 572
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 212, 433
HspAI GCGC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 754
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 2 cut(s) 607, 710
LmnI GCTCC 2 cut(s) 350, 520
Lsp1109I GCAGC 2 cut(s) 623, 674
LweI GCATC 1 cut(s) 373
MaeII ACGT 3 cut(s) 240, 408, 572
MalI GATC 2 cut(s) 609, 712
MboI GATC 2 cut(s) 607, 710
MboII GAAGA 4 cut(s) 63, 527, 784, 790
MlsI TGGCCA 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 2 cut(s) 111, 767
MmeI TCCRAC 4 cut(s) 99, 130, 136, 567
Mox20I TGGCCA 1 cut(s) 179
MroI TCCGGA 1 cut(s) 754
MscI TGGCCA 1 cut(s) 179
MseI TTAA 1 cut(s) 569
Msp20I TGGCCA 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 3 cut(s) 288, 561, 755
MspR9I CCNGG 2 cut(s) 398, 456
MvaI CCWGG 2 cut(s) 398, 456
MwoI GCNNNNNNNGC 3 cut(s) 47, 176, 659
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 607, 710
NlaIII CATG 2 cut(s) 212, 433
NlaIV GGNNCC 3 cut(s) 7, 292, 753
PasI CCCWGGG 1 cut(s) 397
PfeI GAWTC 3 cut(s) 18, 628, 647
PkrI GCNGC 5 cut(s) 43, 46, 49, 638, 664
PleI GAGTC 2 cut(s) 111, 766
PpsI GAGTC 2 cut(s) 111, 766
PshAI GACNNNNGTC 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 396, 454
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 2 cut(s) 396, 454
PspN4I GGNNCC 3 cut(s) 7, 292, 753
PspPI GGNCC 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 668
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 5 cut(s) 42, 45, 48, 637, 663
Sau3AI GATC 2 cut(s) 607, 710
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 2 cut(s) 111, 767
ScrFI CCNGG 2 cut(s) 398, 456
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 5 cut(s) 42, 45, 48, 651, 674
StyD4I CCNGG 2 cut(s) 396, 454
StyI CCWWGG 2 cut(s) 429, 798
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 3 cut(s) 243, 411, 575
TaqI TCGA 1 cut(s) 468
TauI GCSGC 3 cut(s) 44, 47, 50
TfiI GAWTC 3 cut(s) 18, 628, 647
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TseI GCWGC 2 cut(s) 636, 662
TspDTI ATGAA 4 cut(s) 294, 533, 684, 688
TspGWI ACGGA 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 389
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.