pycom01g10820

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009131
Physical Location & Seq
Forward (+)
11608869 .. 11610710
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10820.2

Sequence Viewer

Length: 738 bp
ATGGCGGAATCCATCGTCACCAAATCCAACACATACAACCTCTTCGTGAACCTCTTGGAGGGCAAAACCCTAACCCTAAAATTCACAACCCCGGAGATCCCCGCCACTTCCCTCAAGCACCTCCTATACAAATTCACCAAAATACCCCTCCAGCACCAGCGCCTCGTCACCGGGACTTGCCAGCTCGAGGATGATTCTGTCCTCTCGTGCTCCTCCTCCCACGCGCCGGACTTCCCAACCGTGCATCTTCTGCTCCGTCTCGCCGGAGGAAAGGGCGGGTTCGGGTCGCTGCTGCGCGGGGCGGCGACGAAGGCCGGGCAGAAGAAGACGAGCAATTTCGACGCTTGTCGCGACATGAGTGGTCGGCGGTTGAGGCATGTTAATGCGGAGAAGAAGCTGGAGGAGTGGAGGGCTGAGGAAGAAGAGAGGATGCTTGAGAAGATGGCAGAGGATTATTTGAAGGGTGTGGCGAAGAAGGGCAAAAGGGGAACTGGGGATGATTTGGCTGAGAAGTATGTGGCCAAGTATAGGGAGCAGTCGGAGCGCTGCATTTCGGAGGTTTTGGATTCAGTTAAGGAGGCAGTGAAGGGGAAGCGTAAGGGGCCGGCCAAGGAGGCCGTGGAGGATTCGAAAAGGCTGAAAATTTGTTCTGGTGAAACTTGTTTCGGAAATGCTACATTTTCTTTATTTCAGAAACTTTTTGGAGAAACACTGTATCTTCCTACCATTTCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

246

Amino Acids

27.27

Weight (kDa)

9.18

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 224, 297, 351
AciI CCGC 7 cut(s) 5, 102, 276, 297, 302, 367, 386
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 2 cut(s) 519, 606
AcsI RAATTY 3 cut(s) 80, 131, 642
AfeI AGCGCT 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
AgsI TTSAA 1 cut(s) 460
AluBI AGCT 2 cut(s) 184, 397
AluI AGCT 2 cut(s) 184, 397
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 545
AoxI GGCC 5 cut(s) 312, 519, 602, 606, 615
ApeKI GCWGC 3 cut(s) 289, 292, 546
ApoI RAATTY 3 cut(s) 80, 131, 642
AspLEI GCGC 4 cut(s) 162, 226, 297, 546
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 3 cut(s) 92, 172, 316
AsuHPI GGTGA 4 cut(s) 10, 127, 160, 665
AsuII TTCGAA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 185
BalI TGGCCA 1 cut(s) 521
BauI CACGAG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 276, 279, 533
BccI CCATC 2 cut(s) 20, 436
BceAI ACGGC 1 cut(s) 602
BcnI CCSGG 3 cut(s) 92, 172, 316
BcoDI GTCTC 1 cut(s) 263
BfoI RGCGCY 2 cut(s) 163, 547
BglI GCCNNNNNGGC 1 cut(s) 614
BisI GCNGC 4 cut(s) 290, 293, 303, 547
BlsI GCNGC 4 cut(s) 291, 294, 304, 548
Bme1390I CCNGG 3 cut(s) 92, 172, 316
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 3 cut(s) 92, 172, 316
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 253, 420
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 134, 419
Bpu10I CCTNAGC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 98, 455
BpuMI CCSGG 3 cut(s) 92, 172, 316
BsaJI CCNNGG 3 cut(s) 90, 609, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 496
BseDI CCNNGG 3 cut(s) 90, 609, 618
BseGI GGATG 3 cut(s) 196, 435, 502
BseLI CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
BseMII CTCAG 2 cut(s) 405, 498
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 3 cut(s) 202, 205, 416
BseXI GCAGC 3 cut(s) 276, 279, 533
Bsh1236I CGCG 3 cut(s) 224, 297, 351
BshFI GGCC 5 cut(s) 314, 521, 604, 608, 617
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
BsmAI GTCTC 1 cut(s) 263
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 5 cut(s) 314, 521, 604, 608, 617
BsoBI CYCGRG 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 96
Bsp68I TCGCGA 1 cut(s) 351
BspACI CCGC 7 cut(s) 5, 102, 276, 297, 302, 367, 386
BspANI GGCC 5 cut(s) 314, 521, 604, 608, 617
BspCNI CTCAG 2 cut(s) 406, 499
BspFNI CGCG 3 cut(s) 224, 297, 351
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 3 cut(s) 90, 609, 618
BssMI GATC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 241, 714
Bst6I CTCTTC 2 cut(s) 47, 417
BstAPI GCANNNNNTGC 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 182, 606
BstDEI CTNAG 2 cut(s) 414, 507
BstDSI CCRYGG 1 cut(s) 618
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 196, 435, 502
BstFNI CGCG 3 cut(s) 224, 297, 351
BstH2I RGCGCY 2 cut(s) 163, 547
BstHHI GCGC 4 cut(s) 162, 226, 297, 546
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 6 cut(s) 250, 311, 373, 541, 601, 614
BstNSI RCATGY 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 90, 170, 314
BstUI CGCG 3 cut(s) 224, 297, 351
BstV1I GCAGC 3 cut(s) 276, 279, 533
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 5 cut(s) 314, 521, 604, 608, 617
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 3 cut(s) 196, 435, 502
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 2 cut(s) 588, 710
BtuMI TCGCGA 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 182, 606
CfoI GCGC 4 cut(s) 162, 226, 297, 546
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 350
CviAII CATG 2 cut(s) 355, 377
DdeI CTNAG 2 cut(s) 414, 507
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EaeI YGGCCR 2 cut(s) 519, 606
Eam1104I CTCTTC 2 cut(s) 47, 417
EarI CTCTTC 2 cut(s) 47, 417
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 609
Eco47III AGCGCT 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 2 cut(s) 358, 380
FaiI YATR 6 cut(s) 34, 127, 356, 378, 516, 528
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 354, 376
FauI CCCGC 3 cut(s) 109, 269, 290
Fnu4HI GCNGC 4 cut(s) 290, 293, 303, 547
FokI GGATG 3 cut(s) 203, 442, 509
FseI GGCCGGCC 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 290, 293, 303, 547
GlaI GCGC 4 cut(s) 161, 225, 296, 545
GluI GCNGC 4 cut(s) 290, 293, 303, 547
GsuI CTGGAG 2 cut(s) 134, 419
HaeII RGCGCY 2 cut(s) 163, 547
HaeIII GGCC 5 cut(s) 314, 521, 604, 608, 617
HapII CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
HgaI GACGC 1 cut(s) 350
HhaI GCGC 4 cut(s) 162, 226, 297, 546
Hin1II CATG 2 cut(s) 358, 380
Hin6I GCGC 4 cut(s) 160, 224, 295, 544
HinP1I GCGC 4 cut(s) 160, 224, 295, 544
HinfI GANTC 4 cut(s) 8, 194, 566, 626
HpaII CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
HphI GGTGA 4 cut(s) 10, 127, 160, 665
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 541, 556, 668, 693
Hpy188III TCNNGA 2 cut(s) 46, 350
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 310, 344
HpyAV CCTTC 4 cut(s) 304, 454, 469, 580
HpyCH4III ACNGT 2 cut(s) 241, 714
HpyCH4V TGCA 2 cut(s) 244, 549
HpyF10VI GCNNNNNNNGC 6 cut(s) 250, 311, 373, 541, 601, 614
HpyF3I CTNAG 2 cut(s) 414, 507
Hsp92II CATG 2 cut(s) 358, 380
HspAI GCGC 4 cut(s) 160, 224, 295, 544
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 4 cut(s) 215, 258, 532, 541
Lsp1109I GCAGC 3 cut(s) 276, 279, 533
LweI GCATC 2 cut(s) 253, 420
MaeIII GTNAC 2 cut(s) 16, 166
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 4 cut(s) 80, 131, 334, 642
MluNI TGGCCA 1 cut(s) 521
MmeI TCCRAC 2 cut(s) 51, 519
Mox20I TGGCCA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 604
MscI TGGCCA 1 cut(s) 521
MseI TTAA 3 cut(s) 381, 573, 736
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 521
MspI CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
MspR9I CCNGG 3 cut(s) 92, 172, 316
MvnI CGCG 3 cut(s) 224, 297, 351
MwoI GCNNNNNNNGC 6 cut(s) 250, 311, 373, 541, 601, 614
NaeI GCCGGC 1 cut(s) 606
NciI CCSGG 3 cut(s) 92, 172, 316
NdeII GATC 1 cut(s) 96
NgoMIV GCCGGC 1 cut(s) 604
NlaIII CATG 2 cut(s) 358, 380
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 16, 166
NruI TCGCGA 1 cut(s) 351
NspI RCATGY 1 cut(s) 380
NspV TTCGAA 1 cut(s) 629
PaeR7I CTCGAG 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 606
PfeI GAWTC 4 cut(s) 8, 194, 566, 626
PkrI GCNGC 4 cut(s) 291, 294, 304, 548
PshAI GACNNNNGTC 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 185
PsuI RGATCY 1 cut(s) 96
RigI GGCCGGCC 1 cut(s) 608
RruI TCGCGA 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 3 cut(s) 381, 573, 736
SatI GCNGC 4 cut(s) 290, 293, 303, 547
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 92, 172, 316
SduI GDGCHC 1 cut(s) 212
SetI ASST 6 cut(s) 42, 54, 123, 186, 399, 561
SfaNI GCATC 2 cut(s) 253, 420
SfiI GGCCNNNNNGGCC 1 cut(s) 614
Sfr274I CTCGAG 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 3 cut(s) 113, 185, 434
SmoI CTYRAG 3 cut(s) 113, 185, 434
Sse9I AATT 4 cut(s) 80, 131, 334, 642
SsiI CCGC 7 cut(s) 5, 102, 276, 297, 302, 367, 386
StyD4I CCNGG 3 cut(s) 90, 170, 314
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 241, 714
TaqI TCGA 3 cut(s) 186, 339, 629
TasI AATT 4 cut(s) 80, 131, 334, 642
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 4 cut(s) 8, 194, 566, 626
Tru1I TTAA 3 cut(s) 381, 573, 736
Tru9I TTAA 3 cut(s) 381, 573, 736
TscAI CASTG 2 cut(s) 588, 717
TseFI GTSAC 2 cut(s) 16, 166
TseI GCWGC 3 cut(s) 289, 292, 546
Tsp45I GTSAC 2 cut(s) 16, 166
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 2 cut(s) 588, 717
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 3 cut(s) 80, 131, 642
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XhoI CTCGAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.