AT3G10730

SUN domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3358288 .. 3360702
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10730.1

Sequence Viewer

Length: 1368 bp
ATGTCGGCGTCAACGGTGTCAATCACCGCTAGTCCTAGGACAATAAGGCGGACGCCGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCATGCCAATGCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAGGATCTGATTCGCGCCGAGGCTGCCGGTGAGAGATCCAACACCTACGACGTAGGTCCGGTGACAAGGAAATCAGGATCCACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAAGTCTCAGGGGAATAAGATAGATAGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGCTCTTTTGTTACTTGTTGGATTGATTCAGTTGATTAGGAAATTGACTTTGAAGGATTCGTCTCTGTCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCGGATTTCTGCAGTTGATGGTTTGGTGAAGACTACGACGAAGATGATGCAGGTTCAAGTTGAGTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGCAGACGATAGATTCCACATCTTCTGTGTTACATAGTGAGTTGAAGAAGGTAGAGTCTAAGACAGAGAGGTTACAGGTTTCTGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAGTTAGAGAGAGTTTACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATGTTAACATTGATAAACTGAGGGCTTATGCTCGTGACATAGTGGAGAAAGAGATAGGGAAACATGTTGCAGATGGCCTTGGTCGAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTTGTAATGGGGCATTCGGATCCGTTTCTTGTTGGAAATGGGCGTAATTGGTTTGGGACAAGCAGGAGACGGGTTCATAGCAAAGCGGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCAATGGATATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAAGCTGTTACTTTGGAACATGTCTCTAAGGCTGTAGCATATGACAGATCGAGCGCCCCAAAGGATTGCCGTGTATCAGGATGGCTAGGTGACATAGATATGGAGACTGAGACAATGCCCCTTCTTACAGAATTCAGTTACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGACTCTGCTCACTCAGGACTTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTGCATCTACCGCTTCAGGGTTCATGGCCGTGAACTAGACTCAGTCTCTGTTGCTCATGCTTGA

Protein Analysis

455

Amino Acids

49.94

Weight (kDa)

9.19

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 312 - 445 5.5e-42 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
Acc36I ACCTGC 1 cut(s) 508
AccII CGCG 4 cut(s) 165, 236, 274, 335
AciI CCGC 8 cut(s) 27, 49, 95, 119, 234, 274, 947, 1315
AclWI GGATC 6 cut(s) 162, 180, 222, 235, 875, 888
AcoI YGGCCR 1 cut(s) 1330
AcsI RAATTY 2 cut(s) 424, 1181
AcuI CTGAAG 1 cut(s) 1303
AcyI GRCGYC 2 cut(s) 8, 53
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 4 cut(s) 240, 971, 1001, 1321
AflIII ACRYGT 2 cut(s) 808, 1069
AgsI TTSAA 6 cut(s) 400, 437, 524, 616, 721, 1276
AjnI CCWGG 1 cut(s) 979
AluBI AGCT 3 cut(s) 860, 1055, 1293
AluI AGCT 3 cut(s) 860, 1055, 1293
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 7 cut(s) 285, 414, 922, 1078, 1148, 1154, 1354
AlwI GGATC 6 cut(s) 162, 180, 222, 235, 875, 888
AlwNI CAGNNNCTG 3 cut(s) 1055, 1235, 1352
AoxI GGCC 2 cut(s) 820, 1330
ApeKI GCWGC 2 cut(s) 173, 262
ApoI RAATTY 2 cut(s) 424, 1181
Asp700I GAANNNNTTC 1 cut(s) 1294
AspA2I CCTAGG 1 cut(s) 35
AspLEI GCGC 2 cut(s) 167, 1106
AspS9I GGNCC 2 cut(s) 206, 1203
AsuHPI GGTGA 7 cut(s) 16, 80, 191, 223, 505, 749, 1151
AsuII TTCGAA 1 cut(s) 422
AvaII GGWCC 2 cut(s) 206, 1203
AvrII CCTAGG 1 cut(s) 35
BamHI GGATCC 2 cut(s) 227, 880
BanII GRGCYC 1 cut(s) 352
BauI CACGAG 1 cut(s) 777
BbsI GAAGAC 3 cut(s) 320, 408, 503
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 2 cut(s) 160, 274
BccI CCATC 4 cut(s) 479, 541, 812, 1125
BceAI ACGGC 2 cut(s) 1104, 1317
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 496, 530
BciT130I CCWGG 1 cut(s) 981
BcoDI GTCTC 7 cut(s) 285, 414, 922, 1078, 1148, 1154, 1354
BfaI CTAG 7 cut(s) 30, 36, 687, 1022, 1136, 1268, 1340
BfmI CTRYAG 3 cut(s) 477, 654, 1083
BfoI RGCGCY 1 cut(s) 1107
BfuAI ACCTGC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 3 cut(s) 120, 174, 263
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 3 cut(s) 121, 175, 264
Bme1390I CCNGG 1 cut(s) 981
Bme18I GGWCC 2 cut(s) 206, 1203
BmgT120I GGNCC 2 cut(s) 206, 1203
BmiI GGNNCC 3 cut(s) 229, 882, 978
BmrFI CCNGG 1 cut(s) 981
BmsI GCATC 2 cut(s) 504, 1317
BoxI GACNNNNGTC 1 cut(s) 204
BpiI GAAGAC 3 cut(s) 320, 408, 503
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu14I TTCGAA 1 cut(s) 422
BsaHI GRCGYC 2 cut(s) 8, 53
BsaJI CCNNGG 4 cut(s) 35, 168, 823, 1285
BsaWI WCCGGW 2 cut(s) 65, 208
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 971, 1001, 1321
Bse118I RCCGGY 2 cut(s) 55, 176
Bse3DI GCAATG 2 cut(s) 1015, 1224
BseBI CCWGG 1 cut(s) 981
BseDI CCNNGG 4 cut(s) 35, 168, 823, 1285
BseGI GGATG 1 cut(s) 1136
BseLI CCNNNNNNNGG 4 cut(s) 240, 971, 1001, 1321
BseMI GCAATG 2 cut(s) 1015, 1224
BseMII CTCAG 5 cut(s) 296, 755, 1149, 1257, 1359
BseRI GAGGAG 2 cut(s) 707, 728
BseXI GCAGC 2 cut(s) 160, 274
Bsh1236I CGCG 4 cut(s) 165, 236, 274, 335
BshFI GGCC 2 cut(s) 822, 1332
BsiHKAI GWGCWC 1 cut(s) 1039
BsiSI CCGG 4 cut(s) 56, 66, 177, 209
BslFI GGGAC 2 cut(s) 256, 931
BslI CCNNNNNNNGG 4 cut(s) 240, 971, 1001, 1321
BsmAI GTCTC 7 cut(s) 285, 414, 922, 1078, 1148, 1154, 1354
BsmBI CGTCTC 2 cut(s) 414, 922
BsmFI GGGAC 2 cut(s) 256, 931
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 2 cut(s) 822, 1332
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 352, 1039
Bsp143I GATC 5 cut(s) 154, 185, 227, 880, 1097
Bsp19I CCATGG 1 cut(s) 1285
Bsp68I TCGCGA 1 cut(s) 335
BspACI CCGC 8 cut(s) 27, 49, 95, 119, 234, 274, 947, 1315
BspANI GGCC 2 cut(s) 822, 1332
BspCNI CTCAG 5 cut(s) 295, 756, 1150, 1256, 1358
BspFNI CGCG 4 cut(s) 165, 236, 274, 335
BspLI GGNNCC 3 cut(s) 229, 882, 978
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 6 cut(s) 162, 180, 222, 235, 875, 888
BspQI GCTCTTC 1 cut(s) 1300
BspT104I TTCGAA 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 1015, 1224
BsrFI RCCGGY 2 cut(s) 55, 176
BssAI RCCGGY 2 cut(s) 55, 176
BssECI CCNNGG 4 cut(s) 35, 168, 823, 1285
BssMI GATC 5 cut(s) 154, 185, 227, 880, 1097
BssNI GRCGYC 2 cut(s) 8, 53
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 3 cut(s) 35, 823, 1285
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 981
Bst4CI ACNGT 4 cut(s) 16, 319, 987, 1261
Bst6I CTCTTC 1 cut(s) 1300
BstACI GRCGYC 2 cut(s) 8, 53
BstAPI GCANNNNNTGC 1 cut(s) 1235
BstBI TTCGAA 1 cut(s) 422
BstDEI CTNAG 9 cut(s) 282, 630, 764, 1031, 1077, 1158, 1195, 1243, 1345
BstDSI CCRYGG 1 cut(s) 1285
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 1 cut(s) 1136
BstFNI CGCG 4 cut(s) 165, 236, 274, 335
BstH2I RGCGCY 1 cut(s) 1107
BstHHI GCGC 2 cut(s) 167, 1106
BstKTI GATC 5 cut(s) 157, 188, 230, 883, 1100
BstMAI GTCTC 7 cut(s) 285, 414, 922, 1078, 1148, 1154, 1354
BstMBI GATC 5 cut(s) 154, 185, 227, 880, 1097
BstMWI GCNNNNNNNGC 5 cut(s) 119, 173, 271, 1235, 1314
BstNI CCWGG 1 cut(s) 981
BstNSI RCATGY 2 cut(s) 812, 1073
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 979
BstSFI CTRYAG 3 cut(s) 477, 654, 1083
BstUI CGCG 4 cut(s) 165, 236, 274, 335
BstV1I GCAGC 2 cut(s) 160, 274
BstV2I GAAGAC 3 cut(s) 320, 408, 503
BstX2I RGATCY 4 cut(s) 154, 185, 227, 880
BstYI RGATCY 4 cut(s) 154, 185, 227, 880
BsuRI GGCC 2 cut(s) 822, 1332
BtgI CCRYGG 1 cut(s) 1285
BtsCI GGATG 1 cut(s) 1136
BtsIMutI CAGTG 3 cut(s) 324, 992, 1257
BtuMI TCGCGA 1 cut(s) 335
BveI ACCTGC 1 cut(s) 508
CaiI CAGNNNCTG 3 cut(s) 1055, 1235, 1352
CfoI GCGC 2 cut(s) 167, 1106
Cfr10I RCCGGY 2 cut(s) 55, 176
Cfr13I GGNCC 2 cut(s) 206, 1203
CseI GACGC 4 cut(s) 61, 254, 280, 837
Csp6I GTAC 1 cut(s) 144
CviAII CATG 6 cut(s) 110, 809, 1070, 1286, 1328, 1361
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 9 cut(s) 282, 630, 764, 1031, 1077, 1158, 1195, 1243, 1345
DpnI GATC 5 cut(s) 156, 187, 229, 882, 1099
DpnII GATC 5 cut(s) 154, 185, 227, 880, 1097
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 1330
Eam1104I CTCTTC 1 cut(s) 1300
EarI CTCTTC 1 cut(s) 1300
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 35, 823, 1285
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 206, 1203
Eco57I CTGAAG 1 cut(s) 1303
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoRI GAATTC 1 cut(s) 1181
EcoRII CCWGG 1 cut(s) 979
EcoT14I CCWWGG 3 cut(s) 35, 823, 1285
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 3 cut(s) 35, 823, 1285
Esp3I CGTCTC 2 cut(s) 414, 922
FaeI CATG 6 cut(s) 113, 812, 1073, 1289, 1331, 1364
FaqI GGGAC 2 cut(s) 256, 931
FatI CATG 6 cut(s) 109, 808, 1069, 1285, 1327, 1360
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 1090
Fnu4HI GCNGC 3 cut(s) 120, 174, 263
FokI GGATG 1 cut(s) 1143
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 120, 174, 263
FspBI CTAG 7 cut(s) 30, 36, 687, 1022, 1136, 1268, 1340
GlaI GCGC 2 cut(s) 166, 1105
GluI GCNGC 3 cut(s) 120, 174, 263
HaeII RGCGCY 1 cut(s) 1107
HaeIII GGCC 2 cut(s) 822, 1332
HapII CCGG 4 cut(s) 56, 66, 177, 209
HgaI GACGC 4 cut(s) 61, 254, 280, 837
HhaI GCGC 2 cut(s) 167, 1106
Hin1I GRCGYC 2 cut(s) 8, 53
Hin1II CATG 6 cut(s) 113, 812, 1073, 1289, 1331, 1364
Hin6I GCGC 2 cut(s) 165, 1104
HinP1I GCGC 2 cut(s) 165, 1104
HincII GTYRAC 4 cut(s) 12, 751, 960, 1255
HindII GTYRAC 4 cut(s) 12, 751, 960, 1255
HpaI GTTAAC 2 cut(s) 751, 960
HpaII CCGG 4 cut(s) 56, 66, 177, 209
HphI GGTGA 7 cut(s) 16, 80, 191, 223, 505, 749, 1151
Hpy166II GTNNAC 6 cut(s) 12, 709, 751, 960, 1255, 1337
Hpy188I TCNGA 8 cut(s) 159, 270, 457, 471, 745, 880, 966, 999
Hpy188III TCNNGA 9 cut(s) 225, 334, 536, 561, 687, 779, 1049, 1128, 1245
Hpy8I GTNNAC 6 cut(s) 12, 709, 751, 960, 1255, 1337
Hpy99I CGWCG 4 cut(s) 203, 241, 270, 508
HpyAV CCTTC 4 cut(s) 394, 613, 718, 1181
HpyCH4III ACNGT 4 cut(s) 16, 319, 987, 1261
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 6 cut(s) 479, 517, 815, 1211, 1229, 1308
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 173, 271, 1235, 1314
HpyF3I CTNAG 9 cut(s) 282, 630, 764, 1031, 1077, 1158, 1195, 1243, 1345
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 8, 53
Hsp92II CATG 6 cut(s) 113, 812, 1073, 1289, 1331, 1364
HspAI GCGC 2 cut(s) 165, 1104
KspAI GTTAAC 2 cut(s) 751, 960
Kzo9I GATC 5 cut(s) 154, 185, 227, 880, 1097
LguI GCTCTTC 1 cut(s) 1300
LmnI GCTCC 2 cut(s) 857, 976
Lsp1109I GCAGC 2 cut(s) 160, 274
LweI GCATC 2 cut(s) 504, 1317
MaeI CTAG 7 cut(s) 30, 36, 687, 1022, 1136, 1268, 1340
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 8 cut(s) 211, 357, 600, 642, 779, 1057, 1139, 1187
MalI GATC 5 cut(s) 156, 187, 229, 882, 1099
MboI GATC 5 cut(s) 154, 185, 227, 880, 1097
MfeI CAATTG 2 cut(s) 123, 432
MflI RGATCY 4 cut(s) 154, 185, 227, 880
MhlI GDGCHC 2 cut(s) 352, 1039
MlyI GAGTC 5 cut(s) 140, 475, 635, 1226, 1337
MmeI TCCRAC 6 cut(s) 213, 248, 346, 449, 874, 1305
MnlI CCTC 8 cut(s) 163, 296, 564, 633, 685, 706, 759, 1005
MroXI GAANNNNTTC 1 cut(s) 1294
MseI TTAA 4 cut(s) 665, 750, 951, 959
MslI CAYNNNNRTG 3 cut(s) 114, 1148, 1332
MspI CCGG 4 cut(s) 56, 66, 177, 209
MspR9I CCNGG 1 cut(s) 981
MunI CAATTG 2 cut(s) 123, 432
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 981
MvnI CGCG 4 cut(s) 165, 236, 274, 335
MwoI GCNNNNNNNGC 5 cut(s) 119, 173, 271, 1235, 1314
NcoI CCATGG 1 cut(s) 1285
NdeI CATATG 1 cut(s) 1090
NdeII GATC 5 cut(s) 154, 185, 227, 880, 1097
NlaIII CATG 6 cut(s) 113, 812, 1073, 1289, 1331, 1364
NlaIV GGNNCC 3 cut(s) 229, 882, 978
NmeAIII GCCGAG 2 cut(s) 123, 193
NmuCI GTSAC 3 cut(s) 211, 779, 1139
NruI TCGCGA 1 cut(s) 335
NspI RCATGY 2 cut(s) 812, 1073
NspV TTCGAA 1 cut(s) 422
PciI ACATGT 2 cut(s) 808, 1069
PciSI GCTCTTC 1 cut(s) 1300
PctI GAATGC 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 1294
PfeI GAWTC 7 cut(s) 104, 160, 373, 404, 557, 584, 740
PflFI GACNNNGTC 1 cut(s) 1346
PkrI GCNGC 3 cut(s) 121, 175, 264
PleI GAGTC 5 cut(s) 139, 474, 634, 1226, 1337
PpsI GAGTC 5 cut(s) 139, 474, 634, 1226, 1337
PscI ACATGT 2 cut(s) 808, 1069
PshAI GACNNNNGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 979
PspGI CCWGG 1 cut(s) 979
PspN4I GGNNCC 3 cut(s) 229, 882, 978
PspPI GGNCC 2 cut(s) 206, 1203
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 3 cut(s) 1055, 1235, 1352
PsuI RGATCY 4 cut(s) 154, 185, 227, 880
PsyI GACNNNGTC 1 cut(s) 1346
RruI TCGCGA 1 cut(s) 335
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 3 cut(s) 114, 1148, 1332
SapI GCTCTTC 1 cut(s) 1300
SaqAI TTAA 4 cut(s) 665, 750, 951, 959
SatI GCNGC 3 cut(s) 120, 174, 263
Sau3AI GATC 5 cut(s) 154, 185, 227, 880, 1097
Sau96I GGNCC 2 cut(s) 206, 1203
SchI GAGTC 5 cut(s) 140, 475, 635, 1226, 1337
ScrFI CCNGG 1 cut(s) 981
SduI GDGCHC 2 cut(s) 352, 1039
SfaNI GCATC 2 cut(s) 504, 1317
SfcI CTRYAG 3 cut(s) 477, 654, 1083
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 2 cut(s) 206, 1203
SmiMI CAYNNNNRTG 3 cut(s) 114, 1148, 1332
SsiI CCGC 8 cut(s) 27, 49, 95, 119, 234, 274, 947, 1315
SspMI CTAG 7 cut(s) 30, 36, 687, 1022, 1136, 1268, 1340
StyD4I CCNGG 1 cut(s) 979
StyI CCWWGG 3 cut(s) 35, 823, 1285
TaaI ACNGT 4 cut(s) 16, 319, 987, 1261
TaiI ACGT 1 cut(s) 204
TaqI TCGA 4 cut(s) 422, 829, 1100, 1221
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 7 cut(s) 104, 160, 373, 404, 557, 584, 740
Tru1I TTAA 4 cut(s) 665, 750, 951, 959
Tru9I TTAA 4 cut(s) 665, 750, 951, 959
TscAI CASTG 3 cut(s) 324, 992, 1264
TseFI GTSAC 3 cut(s) 211, 779, 1139
TseI GCWGC 2 cut(s) 173, 262
Tsp45I GTSAC 3 cut(s) 211, 779, 1139
TspDTI ATGAA 2 cut(s) 926, 1316
TspGWI ACGGA 2 cut(s) 455, 873
TspRI CASTG 3 cut(s) 324, 992, 1264
Tth111I GACNNNGTC 1 cut(s) 1346
VpaK11BI GGWCC 2 cut(s) 206, 1203
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 2 cut(s) 424, 1181
XbaI TCTAGA 1 cut(s) 686
XceI RCATGY 2 cut(s) 812, 1073
XmaJI CCTAGG 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 1294
XspI CTAG 7 cut(s) 30, 36, 687, 1022, 1136, 1268, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.