Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037448.1

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 497

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037448.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

agtgttgcttatgacagaacgagtgctcccaaggactgtcgtatatctgcatggctgcgaggagtgcatgatcaggatttagaagtccatacagagaagaggtttctgttggctgagttcacatatgacctcgagaagagcaatgcccagacagtcactgtgttggactcagcagtctctaacattgttgacacagtgaggttggacttcacatacttgcatatatcgtctgcgatttcatggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

82

Amino Acids

9.32

Weight (kDa)

5.11

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	105, 183
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	106, 182
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	38, 154, 160, 196
Bst6I	CTCTTC	2 cut(s)	92, 131
BstDEI	CTNAG	2 cut(s)	114, 169
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	156, 201
CaiI	CAGNNNCTG	1 cut(s)	158
CviAII	CATG	4 cut(s)	51, 68, 240, 246
CviJI	RGCY	2 cut(s)	55, 113
CviKI_1	RGCY	2 cut(s)	55, 113
DdeI	CTNAG	2 cut(s)	114, 169
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	92, 131
EarI	CTCTTC	2 cut(s)	92, 131
Eco130I	CCWWGG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	54, 71, 243, 249
FatI	CATG	4 cut(s)	50, 67, 239, 245
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	54, 71, 243, 249
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	120, 190
Hpy188III	TCNNGA	2 cut(s)	74, 133
Hpy8I	GTNNAC	2 cut(s)	120, 190
HpyCH4III	ACNGT	4 cut(s)	38, 154, 160, 196
HpyCH4V	TGCA	3 cut(s)	50, 67, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	114, 169
Hsp92II	CATG	4 cut(s)	54, 71, 243, 249
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	2 cut(s)	59, 161
Lsp1109I	GCAGC	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	109, 148
MhlI	GDGCHC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	144, 183
MnlI	CCTC	4 cut(s)	53, 93, 140, 192
MslI	CAYNNNNRTG	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	4 cut(s)	54, 71, 243, 249
NmuCI	GTSAC	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	3 cut(s)	104, 132, 203
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	38, 154, 160, 196
TaqI	TCGA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	163, 201
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	163, 201
XhoI	CTCGAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.