Rh1AG107300

SUN domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
18599811 .. 18602930
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG107300.1

Sequence Viewer

Length: 1353 bp
ATGTCGGCATCGACTGTATCTATCACGGCGAACCCGACGACCCGCCGGCGACCCGTCGTGGCCGTCGAGAAGAGGTCCACCCACATCGAACTCGTCTCCGCCGAACCCCAATCGCAGAGGGCAGACGACCAAACCGCCGCTAACACCAGAGATCTGAGTCACCAGTCCATTAGAAGCGAAACCGCCGTCGACCGCTCCGCTCAGACCCGAAGAACCGGCGCAACTTCCACCGTCTCACCCCCCTCCGCCCACCGCCGCTCTCGCAAAGCCCTACCCGGAACCAAGCGACCTCGCTGGCTCAGGTTCCTTCGTGTTTTCGGCAAGTGGTTCGGTCTTCTTGTTTTCGTCGGCGGTTTGGCCCAGATACTCATACGCCTCGCTTACGGCTCCACTGCCGCCGCGCCCATGGCGTTTACCGACTTGGAGAGTCGGATTGCGGAGGTCGAAGCGTCGATGAAGGAGACCTCTAGGATGCTTCAGGTTGGGGTCGACTTGGCGAGCCGGAAGATCGATAAGGAGGTCGGAGAGTTGAGGAAGGAGGTGGAGGACAGAGGGGTGGCTTTGGCCGGTGAATTGAGGAAATTGGAGGTTAAAAGTGAAGGGCTGGAGAGGTCTGTGGAGGAATTGAAGAGCGTGGAGTGGCTGTCCAAGCAAGAGTTTGAGGGGATTTACCAGGAGTTGAAGAAGGAAGGGAAGAGTGGTGAGTTGGGTGCGAGTTTCGATGATATAATGGCGTATGCCAGGAATGTGGTGGAGAAGGAGATAGAGAAGCATGCTGCGGATGGGCTTGCGAGGGTGGATTATGCATTGGGGAGTGGCGGTGCTGCGGTTGTGAAGCATTCGGAGCCTTATGTGGTGGGGAAAGGGAATTGGTGGACGAGTATGAGGAATGGGGTTCATAGTGATGCTGATAAGATGTTGAGACCGAGTTTTGGAGAGCCTGGGCAGTGTTTTCCATTGAAAGGGAGTAGTGGGTTTGTTCAGATTAAGCTCAGGACAGCAATTATTCCCGAGGCTATCACTCTGGAGCATGTTTCAAAGAGTGTTGCTTACGACAGAACGAGTGCTCCCAAGGACTGTCGTATATCTGCATGGCTGCAAAGAGTGCATGATCAGGATTTAGAAGTCCATACAGAGAAGAGGTTTCTCTTGGCTGAGTTCACATATGACCTCGAGAAGAGCAATGCCCAGACAGTCACTGTGTTGGACTCAGCTGTGTCTAACATTGTTGACACAGTGAGGTTGGATTTCACATCCAATCATGGTAGCCCTTCACATACTTGCATATATCGTCTGCGAGTTCATGGACATGAACCCGAAGCTGTTTCTGTAATGGCCATGCACCTGTCCTAA

Protein Analysis

450

Amino Acids

49.79

Weight (kDa)

8.77

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 302 - 437 4.4e-35 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 195, 200, 258
AccI GTMKAC 2 cut(s) 189, 489
AccII CGCG 1 cut(s) 401
AcoI YGGCCR 3 cut(s) 60, 564, 1335
AcuI CTGAAG 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 932, 962
AgsI TTSAA 4 cut(s) 628, 682, 961, 1038
AjnI CCWGG 3 cut(s) 672, 740, 940
AloI GAACNNNNNNTCC 2 cut(s) 1051, 1083
AluBI AGCT 3 cut(s) 991, 1214, 1322
AluI AGCT 3 cut(s) 991, 1214, 1322
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 4 cut(s) 100, 238, 455, 916
AlwNI CAGNNNCTG 1 cut(s) 1199
Ama87I CYCGRG 2 cut(s) 1010, 1172
AoxI GGCC 4 cut(s) 60, 357, 564, 1335
ApeKI GCWGC 3 cut(s) 776, 824, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 2 cut(s) 221, 403
AspS9I GGNCC 2 cut(s) 75, 358
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 4 cut(s) 152, 228, 581, 713
AvaI CYCGRG 2 cut(s) 1010, 1172
AvaII GGWCC 1 cut(s) 75
BalI TGGCCA 1 cut(s) 1337
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 1069
BbvI GCAGC 3 cut(s) 763, 811, 1083
BccI CCATC 1 cut(s) 776
BceAI ACGGC 4 cut(s) 42, 47, 170, 400
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 3 cut(s) 674, 742, 942
BclI TGATCA 1 cut(s) 1111
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 4 cut(s) 100, 238, 455, 916
BfaI CTAG 1 cut(s) 468
BglII AGATCT 1 cut(s) 151
BisI GCNGC 7 cut(s) 138, 256, 396, 399, 777, 825, 1097
BlsI GCNGC 7 cut(s) 139, 257, 397, 400, 778, 826, 1098
Bme1390I CCNGG 4 cut(s) 276, 674, 742, 942
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 2 cut(s) 1010, 1172
BmgT120I GGNCC 2 cut(s) 75, 358
BmiI GGNNCC 4 cut(s) 280, 305, 388, 846
BmrFI CCNGG 4 cut(s) 276, 674, 742, 942
BmsI GCATC 3 cut(s) 17, 462, 895
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 626, 1046
Bpu10I CCTNAGC 2 cut(s) 299, 992
BpuMI CCSGG 1 cut(s) 276
Bsa29I ATCGAT 1 cut(s) 510
BsaI GGTCTC 2 cut(s) 455, 916
BsaJI CCNNGG 4 cut(s) 405, 941, 1011, 1071
BsaXI ACNNNNNCTCC 6 cut(s) 629, 659, 805, 835, 1051, 1081
Bsc4I CCNNNNNNNGG 2 cut(s) 932, 962
Bse118I RCCGGY 3 cut(s) 45, 215, 566
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 1189
BseBI CCWGG 3 cut(s) 674, 742, 942
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 4 cut(s) 405, 941, 1011, 1071
BseGI GGATG 3 cut(s) 477, 787, 1253
BseLI CCNNNNNNNGG 2 cut(s) 932, 962
BseMI GCAATG 1 cut(s) 1189
BseMII CTCAG 6 cut(s) 146, 215, 313, 1006, 1146, 1224
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 763, 811, 1083
Bsh1236I CGCG 1 cut(s) 401
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 4 cut(s) 62, 359, 566, 1337
BshVI ATCGAT 1 cut(s) 510
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 1069
BsiHKCI CYCGRG 2 cut(s) 1010, 1172
BsiSI CCGG 5 cut(s) 46, 216, 276, 502, 567
BslI CCNNNNNNNGG 2 cut(s) 932, 962
BsmAI GTCTC 4 cut(s) 100, 238, 455, 916
BsmBI CGTCTC 2 cut(s) 100, 238
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 4 cut(s) 62, 359, 566, 1337
Bso31I GGTCTC 2 cut(s) 455, 916
BsoBI CYCGRG 2 cut(s) 1010, 1172
Bsp1286I GDGCHC 1 cut(s) 1069
Bsp143I GATC 3 cut(s) 151, 507, 1111
Bsp19I CCATGG 1 cut(s) 405
BspANI GGCC 4 cut(s) 62, 359, 566, 1337
BspCNI CTCAG 6 cut(s) 147, 214, 312, 1005, 1147, 1223
BspDI ATCGAT 1 cut(s) 510
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 4 cut(s) 280, 305, 388, 846
BspQI GCTCTTC 2 cut(s) 623, 1172
BspTNI GGTCTC 2 cut(s) 455, 916
BsrBI CCGCTC 3 cut(s) 195, 200, 258
BsrDI GCAATG 1 cut(s) 1189
BsrFI RCCGGY 3 cut(s) 45, 215, 566
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 3 cut(s) 45, 215, 566
BssECI CCNNGG 4 cut(s) 405, 941, 1011, 1071
BssMI GATC 3 cut(s) 151, 507, 1111
BssT1I CCWWGG 2 cut(s) 405, 1071
Bst2UI CCWGG 3 cut(s) 674, 742, 942
Bst4CI ACNGT 6 cut(s) 16, 232, 1079, 1195, 1201, 1237
Bst6I CTCTTC 5 cut(s) 65, 623, 689, 1133, 1172
BstAPI GCANNNNNTGC 1 cut(s) 1105
BstC8I GCNNGC 5 cut(s) 47, 296, 499, 774, 789
BstDEI CTNAG 6 cut(s) 155, 201, 299, 992, 1155, 1210
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 477, 787, 1253
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 2 cut(s) 221, 403
BstKTI GATC 3 cut(s) 154, 510, 1114
BstMAI GTCTC 4 cut(s) 100, 238, 455, 916
BstMBI GATC 3 cut(s) 151, 507, 1111
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 5 cut(s) 261, 407, 649, 844, 1105
BstNI CCWGG 3 cut(s) 674, 742, 942
BstNSI RCATGY 2 cut(s) 776, 1034
BstSCI CCNGG 4 cut(s) 274, 672, 740, 940
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 3 cut(s) 763, 811, 1083
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 748
BstYI RGATCY 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 510
BsuRI GGCC 4 cut(s) 62, 359, 566, 1337
BsuTUI ATCGAT 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 3 cut(s) 477, 787, 1253
BtsI GCAGTG 2 cut(s) 390, 953
BtsIMutI CAGTG 4 cut(s) 390, 953, 1197, 1242
Cac8I GCNNGC 5 cut(s) 47, 296, 499, 774, 789
CaiI CAGNNNCTG 1 cut(s) 1199
CfoI GCGC 2 cut(s) 221, 403
Cfr10I RCCGGY 3 cut(s) 45, 215, 566
Cfr13I GGNCC 2 cut(s) 75, 358
ClaI ATCGAT 1 cut(s) 510
CseI GACGC 1 cut(s) 438
CviAII CATG 9 cut(s) 406, 773, 1031, 1092, 1109, 1262, 1304, 1310, 1339
DdeI CTNAG 6 cut(s) 155, 201, 299, 992, 1155, 1210
DpnI GATC 3 cut(s) 153, 509, 1113
DpnII GATC 3 cut(s) 151, 507, 1111
EaeI YGGCCR 3 cut(s) 60, 564, 1335
Eam1104I CTCTTC 5 cut(s) 65, 623, 689, 1133, 1172
EarI CTCTTC 5 cut(s) 65, 623, 689, 1133, 1172
EciI GGCGGA 2 cut(s) 88, 235
Eco130I CCWWGG 2 cut(s) 405, 1071
Eco31I GGTCTC 2 cut(s) 455, 916
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 461
Eco88I CYCGRG 2 cut(s) 1010, 1172
EcoRII CCWGG 3 cut(s) 672, 740, 940
EcoT14I CCWWGG 2 cut(s) 405, 1071
EcoT22I ATGCAT 1 cut(s) 808
ErhI CCWWGG 2 cut(s) 405, 1071
Esp3I CGTCTC 2 cut(s) 100, 238
FaeI CATG 9 cut(s) 409, 776, 1034, 1095, 1112, 1265, 1307, 1313, 1342
FatI CATG 9 cut(s) 405, 772, 1030, 1091, 1108, 1261, 1303, 1309, 1338
FauI CCCGC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 1165
FbaI TGATCA 1 cut(s) 1111
FblI GTMKAC 2 cut(s) 189, 489
Fnu4HI GCNGC 7 cut(s) 138, 256, 396, 399, 777, 825, 1097
FokI GGATG 3 cut(s) 484, 794, 1240
Fsp4HI GCNGC 7 cut(s) 138, 256, 396, 399, 777, 825, 1097
FspBI CTAG 1 cut(s) 468
GlaI GCGC 2 cut(s) 220, 402
GluI GCNGC 7 cut(s) 138, 256, 396, 399, 777, 825, 1097
GsuI CTGGAG 2 cut(s) 626, 1046
HaeIII GGCC 4 cut(s) 62, 359, 566, 1337
HapII CCGG 5 cut(s) 46, 216, 276, 502, 567
HgaI GACGC 1 cut(s) 438
HhaI GCGC 2 cut(s) 221, 403
Hin1II CATG 9 cut(s) 409, 776, 1034, 1095, 1112, 1265, 1307, 1313, 1342
Hin6I GCGC 2 cut(s) 219, 401
HinP1I GCGC 2 cut(s) 219, 401
HincII GTYRAC 3 cut(s) 190, 490, 1231
HindII GTYRAC 3 cut(s) 190, 490, 1231
HinfI GANTC 3 cut(s) 157, 427, 1208
HpaII CCGG 5 cut(s) 46, 216, 276, 502, 567
HphI GGTGA 4 cut(s) 152, 228, 581, 713
Hpy166II GTNNAC 7 cut(s) 78, 190, 414, 490, 876, 1161, 1231
Hpy188I TCNGA 6 cut(s) 156, 204, 432, 524, 844, 984
Hpy188III TCNNGA 6 cut(s) 67, 994, 1010, 1025, 1115, 1174
Hpy8I GTNNAC 7 cut(s) 78, 190, 414, 490, 876, 1161, 1231
Hpy99I CGWCG 6 cut(s) 40, 59, 68, 191, 350, 454
HpyAV CCTTC 8 cut(s) 317, 451, 529, 593, 679, 683, 751, 1281
HpyCH4III ACNGT 6 cut(s) 16, 232, 1079, 1195, 1201, 1237
HpyCH4V TGCA 6 cut(s) 806, 1091, 1099, 1108, 1284, 1342
HpyF10VI GCNNNNNNNGC 5 cut(s) 261, 407, 649, 844, 1105
HpyF3I CTNAG 6 cut(s) 155, 201, 299, 992, 1155, 1210
Hsp92II CATG 9 cut(s) 409, 776, 1034, 1095, 1112, 1265, 1307, 1313, 1342
HspAI GCGC 2 cut(s) 219, 401
KroI GCCGGC 1 cut(s) 45
KroNI GCCGGC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 1111
Kzo9I GATC 3 cut(s) 151, 507, 1111
LguI GCTCTTC 2 cut(s) 623, 1172
LmnI GCTCC 5 cut(s) 200, 392, 844, 1027, 1072
Lsp1109I GCAGC 3 cut(s) 763, 811, 1083
LweI GCATC 3 cut(s) 17, 462, 895
MaeI CTAG 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 158, 1195
MalI GATC 3 cut(s) 153, 509, 1113
MbiI CCGCTC 3 cut(s) 195, 200, 258
MboI GATC 3 cut(s) 151, 507, 1111
MboII GAAGA 9 cut(s) 82, 222, 326, 517, 640, 694, 706, 1150, 1189
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 1069
MlsI TGGCCA 1 cut(s) 1337
MluCI AATT 5 cut(s) 572, 581, 623, 868, 1002
MluNI TGGCCA 1 cut(s) 1337
MlyI GAGTC 3 cut(s) 166, 436, 1202
MmeI TCCRAC 4 cut(s) 410, 502, 1185, 1224
Mox20I TGGCCA 1 cut(s) 1337
Mph1103I ATGCAT 1 cut(s) 808
MreI CGCCGGCG 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 45
MscI TGGCCA 1 cut(s) 1337
MseI TTAA 2 cut(s) 591, 987
MslI CAYNNNNRTG 2 cut(s) 903, 1308
Msp20I TGGCCA 1 cut(s) 1337
MspA1I CMGCKG 1 cut(s) 1214
MspI CCGG 5 cut(s) 46, 216, 276, 502, 567
MspR9I CCNGG 4 cut(s) 276, 674, 742, 942
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 3 cut(s) 674, 742, 942
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 261, 407, 649, 844, 1105
NaeI GCCGGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 1165
NdeII GATC 3 cut(s) 151, 507, 1111
NgoMIV GCCGGC 1 cut(s) 45
NlaIII CATG 9 cut(s) 409, 776, 1034, 1095, 1112, 1265, 1307, 1313, 1342
NlaIV GGNNCC 4 cut(s) 280, 305, 388, 846
NmuCI GTSAC 2 cut(s) 158, 1195
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 2 cut(s) 776, 1034
PaeI GCATGC 1 cut(s) 776
PaeR7I CTCGAG 1 cut(s) 1172
PciSI GCTCTTC 2 cut(s) 623, 1172
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 63, 99
PctI GAATGC 1 cut(s) 838
PdiI GCCGGC 1 cut(s) 47
PkrI GCNGC 7 cut(s) 139, 257, 397, 400, 778, 826, 1098
PleI GAGTC 3 cut(s) 165, 435, 1202
PpsI GAGTC 3 cut(s) 165, 435, 1202
Psp6I CCWGG 3 cut(s) 672, 740, 940
PspGI CCWGG 3 cut(s) 672, 740, 940
PspN4I GGNNCC 4 cut(s) 280, 305, 388, 846
PspPI GGNCC 2 cut(s) 75, 358
PstNI CAGNNNCTG 1 cut(s) 1199
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 1214
RseI CAYNNNNRTG 2 cut(s) 903, 1308
SalI GTCGAC 2 cut(s) 188, 488
SapI GCTCTTC 2 cut(s) 623, 1172
SaqAI TTAA 2 cut(s) 591, 987
SatI GCNGC 7 cut(s) 138, 256, 396, 399, 777, 825, 1097
Sau3AI GATC 3 cut(s) 151, 507, 1111
Sau96I GGNCC 2 cut(s) 75, 358
SchI GAGTC 3 cut(s) 166, 436, 1202
ScrFI CCNGG 4 cut(s) 276, 674, 742, 942
SduI GDGCHC 1 cut(s) 1069
SfaNI GCATC 3 cut(s) 17, 462, 895
Sfr274I CTCGAG 1 cut(s) 1172
SgrAI CRCCGGYG 1 cut(s) 45
SinI GGWCC 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 1172
SmiMI CAYNNNNRTG 2 cut(s) 903, 1308
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
SphI GCATGC 1 cut(s) 776
Sse9I AATT 5 cut(s) 572, 581, 623, 868, 1002
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 4 cut(s) 274, 672, 740, 940
StyI CCWWGG 2 cut(s) 405, 1071
TaaI ACNGT 6 cut(s) 16, 232, 1079, 1195, 1201, 1237
TaqII GACCGA 2 cut(s) 320, 940
TasI AATT 5 cut(s) 572, 581, 623, 868, 1002
TauI GCSGC 4 cut(s) 140, 258, 398, 401
Tru1I TTAA 2 cut(s) 591, 987
Tru9I TTAA 2 cut(s) 591, 987
TscAI CASTG 4 cut(s) 397, 953, 1204, 1242
TseFI GTSAC 2 cut(s) 158, 1195
TseI GCWGC 3 cut(s) 776, 824, 1096
Tsp45I GTSAC 2 cut(s) 158, 1195
TspDTI ATGAA 4 cut(s) 470, 887, 1292, 1326
TspRI CASTG 4 cut(s) 397, 953, 1204, 1242
VpaK11BI GGWCC 1 cut(s) 75
XceI RCATGY 2 cut(s) 776, 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 1172
XmiI GTMKAC 2 cut(s) 189, 489
XspI CTAG 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.