Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002365.1

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Reverse (-)

128094 .. 128669

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002365.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgtattacatgtcaagagatcaaaaaggaaaaaaggattctcaccaaccaagtgttgcttatgacagaacgagtgctcccaaggactgtcgtatatctgcatggctgcgaggagtgcatgatcaggatttagaagtccatacagagaagaggtttctgttggctgagttcacatatgacctcgagaagagcaatgcccagacagtcactgtgttggactcagcagtctctaacattgttgacacagtgaggttggacttcacatacttgcatatatcgtctgcgatttcatggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

6.03

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	9
AloI	GAACNNNNNNTCC	2 cut(s)	61, 93
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	156, 234
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	19, 121
BspCNI	CTCAG	2 cut(s)	157, 233
BspQI	GCTCTTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	19, 121
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	4 cut(s)	89, 205, 211, 247
Bst6I	CTCTTC	2 cut(s)	143, 182
BstDEI	CTNAG	2 cut(s)	165, 220
BstKTI	GATC	2 cut(s)	22, 124
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	19, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	207, 252
CaiI	CAGNNNCTG	1 cut(s)	209
CviAII	CATG	5 cut(s)	10, 102, 119, 291, 297
CviJI	RGCY	2 cut(s)	106, 164
CviKI_1	RGCY	2 cut(s)	106, 164
DdeI	CTNAG	2 cut(s)	165, 220
DpnI	GATC	2 cut(s)	21, 123
DpnII	GATC	2 cut(s)	19, 121
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	143, 182
EarI	CTCTTC	2 cut(s)	143, 182
Eco130I	CCWWGG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	5 cut(s)	13, 105, 122, 294, 300
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FatI	CATG	5 cut(s)	9, 101, 118, 290, 296
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	13, 105, 122, 294, 300
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	38, 218
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	171, 241
Hpy188III	TCNNGA	3 cut(s)	15, 125, 184
Hpy8I	GTNNAC	2 cut(s)	171, 241
HpyCH4III	ACNGT	4 cut(s)	89, 205, 211, 247
HpyCH4V	TGCA	3 cut(s)	101, 118, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	165, 220
Hsp92II	CATG	5 cut(s)	13, 105, 122, 294, 300
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	19, 121
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	2 cut(s)	110, 212
Lsp1109I	GCAGC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	21, 123
MboI	GATC	2 cut(s)	19, 121
MboII	GAAGA	2 cut(s)	160, 199
MhlI	GDGCHC	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	195, 234
MnlI	CCTC	4 cut(s)	104, 144, 191, 243
MslI	CAYNNNNRTG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	19, 121
NlaIII	CATG	5 cut(s)	13, 105, 122, 294, 300
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	182
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	19, 121
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	3 cut(s)	155, 183, 254
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	4 cut(s)	89, 205, 211, 247
TaqI	TCGA	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	2 cut(s)	214, 252
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	214, 252
XceI	RCATGY	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.