RchiOBHm_Chr1g0324281

SUN domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
11963803 .. 11965600
1798 bp
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UTR
Exon/CDS
Intron
PRQ55412

Sequence Viewer

Length: 1356 bp
ATGTCGCCATCGATTGTATCTATCACGGCGAACCCGACGACCCGTCGGCGACCGGTCGTGGCCGTCGAGAAGAGGTCGACCAACATCGAACTCGTCTCCGCCGAACCGAGGGCCGACGACGACCCCCGAACCGAAACCGCCAGAGATCTGAGTCACCAGTCCATCAGAAGCGAAACCGCCGTCGACCGCTCGGCCCAGACCCGTAGAACCGGCGCCACTTCCACCGTCTCACCCCCCTCCGCTACTCGCGGCTCCCGCAAAGCCCTACCCGGAACTAAGCGACCTCGCTGGCTCAGGTTCGTTCGTATTTTCGGCAAGTGGTTCGGTCTTCTTGTTTTCGCTGGTGGTTTGGCCCAGATACTCATGCGCCTCGCTTACGGCTCCACCTCCACCGCCGCCGCGCCCATGGCGTTTACCGACTTGGAGGGTCGGATTGCGGAGGTCGAAGCGTCGATGAAGGAGACCTCTAGGATGCTTCAGGTTGGGGTGGACGTGGCGAGCCGGAAGATCGATGAGGAGGTCGGAAAGTTGAGGAAGGAAATGGAGGACGGGGGGTTGCTTTGGCCGAGGTCCGTGGAGGAATTGAAAAGCGTGGAGTGGCTGTCAAAGCAAGAGTTTGAGAGGATTTACCAGGACTTGAAGAAGGAAGGGGAGAGTGGTGAGTTGGGTGCGAGTTTCGATGATATAATGGCGTATGCCAGGAATGTGGTTGAGAAGGAGATAGAGAAGCATGCCGCCGACGGGCTTGCGAGGGTGGATTATGCAATGGGGAGTGGCGGTGCTGCGGTTGTGAAGCATTCGGAGCCTTATGTGGTGGGGAAAGGGAATTGGTGGATGCGTATGAGGAATGGGGTTCATAGTGATGCTGATAAGATGTTGAGACCGAGTTTCGGAGAGCCTGGGCAGTGTTTTGCATTGAAAGGGAGTAGTGGGTTTGTTCAGATTAAGCTCAGGACAGCAATTATTCCTGAGGCTATCACTTTGGAACATGTTTCAAAGAGTGTTGCTTACGACAGAACGAGTGCTCCCAAGGACTGTCGTGTATCTGCATGGCTGGGAGGAGTGCATGATCAGGAGTTAGAAGTTCATACAGAGAAGAGGTTTCTTTTGGCTGAGTTCACATATGACCTCGAGAAGAGCAATGCCCAGACAGTCACTGTGTTGGACTCGGCTGTGTCTAACATTGTTAACACAGTGAGGTTGGACTTCACATCCAATCATGGTAGCCCTTCACATACTTGCATATATCGTCTCCGAGTTCATGGACATGAACCCGAAACTGTTTCTGTAATGGCCATGCACCAGTCTTATATCGTCTTCGACTTCTCGGGCATGAACCTGACACTGTTACTGTAA

Protein Analysis

451

Amino Acids

49.95

Weight (kDa)

7.77

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 288 - 423 8.2e-36 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 189
AccI GTMKAC 2 cut(s) 77, 183
AccII CGCG 2 cut(s) 249, 401
AcoI YGGCCR 3 cut(s) 60, 563, 1293
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 108, 741, 890
AflIII ACRYGT 1 cut(s) 988
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 4 cut(s) 586, 640, 919, 996
AhdI GACNNNNNGTC 1 cut(s) 42
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 3 cut(s) 630, 698, 898
AloI GAACNNNNNNTCC 2 cut(s) 1009, 1041
AluBI AGCT 1 cut(s) 949
AluI AGCT 1 cut(s) 949
Alw21I GWGCWC 1 cut(s) 1027
Alw26I GTCTC 5 cut(s) 100, 232, 455, 874, 1256
AlwNI CAGNNNCTG 1 cut(s) 1157
Ama87I CYCGRG 2 cut(s) 1130, 1327
AoxI GGCC 6 cut(s) 60, 111, 192, 351, 563, 1293
ApeKI GCWGC 1 cut(s) 782
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AsiGI ACCGGT 1 cut(s) 52
AspLEI GCGC 3 cut(s) 215, 369, 403
AspS9I GGNCC 4 cut(s) 111, 193, 352, 570
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 146, 222, 671
AvaI CYCGRG 2 cut(s) 1130, 1327
AvaII GGWCC 1 cut(s) 570
AxyI CCTNAGG 1 cut(s) 969
BalI TGGCCA 1 cut(s) 1295
BanI GGYRCC 1 cut(s) 212
BbsI GAAGAC 2 cut(s) 320, 1309
Bbv12I GWGCWC 1 cut(s) 1027
BbvI GCAGC 1 cut(s) 769
BccI CCATC 2 cut(s) 16, 170
BceAI ACGGC 4 cut(s) 42, 47, 164, 394
BcgI CGANNNNNNTGC 4 cut(s) 304, 338, 728, 762
BciT130I CCWGG 3 cut(s) 632, 700, 900
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 5 cut(s) 100, 232, 455, 874, 1256
BfaI CTAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 216
BglII AGATCT 1 cut(s) 145
BisI GCNGC 5 cut(s) 250, 396, 399, 735, 783
BlsI GCNGC 5 cut(s) 251, 397, 400, 736, 784
Bme1390I CCNGG 4 cut(s) 270, 632, 700, 900
Bme18I GGWCC 1 cut(s) 570
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 2 cut(s) 1130, 1327
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 4 cut(s) 111, 193, 352, 570
BmiI GGNNCC 4 cut(s) 214, 253, 382, 804
BmrFI CCNGG 4 cut(s) 270, 632, 700, 900
BmsI GCATC 3 cut(s) 462, 825, 853
BpiI GAAGAC 2 cut(s) 320, 1309
Bpu10I CCTNAGC 2 cut(s) 293, 950
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 2 cut(s) 11, 510
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 2 cut(s) 455, 874
BsaJI CCNNGG 6 cut(s) 107, 405, 566, 573, 899, 1029
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 6 cut(s) 587, 617, 763, 793, 1009, 1039
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 741, 890
Bse118I RCCGGY 2 cut(s) 52, 209
Bse1I ACTGG 2 cut(s) 157, 1303
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 2 cut(s) 771, 1147
BseBI CCWGG 3 cut(s) 632, 700, 900
BseCI ATCGAT 2 cut(s) 11, 510
BseDI CCNNGG 6 cut(s) 107, 405, 566, 573, 899, 1029
BseGI GGATG 3 cut(s) 477, 840, 1211
BseLI CCNNNNNNNGG 3 cut(s) 108, 741, 890
BseMI GCAATG 2 cut(s) 771, 1147
BseMII CTCAG 5 cut(s) 140, 307, 960, 964, 1104
BseNI ACTGG 2 cut(s) 157, 1303
BseRI GAGGAG 2 cut(s) 530, 1074
BseXI GCAGC 1 cut(s) 769
BseYI CCCAGC 1 cut(s) 1054
Bsh1236I CGCG 2 cut(s) 249, 401
Bsh1285I CGRYCG 3 cut(s) 53, 57, 187
BshFI GGCC 6 cut(s) 62, 113, 194, 353, 565, 1295
BshNI GGYRCC 1 cut(s) 212
BshTI ACCGGT 1 cut(s) 52
BshVI ATCGAT 2 cut(s) 11, 510
BsiEI CGRYCG 3 cut(s) 53, 57, 187
BsiHKAI GWGCWC 1 cut(s) 1027
BsiHKCI CYCGRG 2 cut(s) 1130, 1327
BsiSI CCGG 4 cut(s) 53, 210, 270, 502
BslI CCNNNNNNNGG 3 cut(s) 108, 741, 890
BsmAI GTCTC 5 cut(s) 100, 232, 455, 874, 1256
BsmBI CGTCTC 3 cut(s) 100, 232, 1256
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 6 cut(s) 62, 113, 194, 353, 565, 1295
Bso31I GGTCTC 2 cut(s) 455, 874
BsoBI CYCGRG 2 cut(s) 1130, 1327
Bsp1286I GDGCHC 1 cut(s) 1027
Bsp143I GATC 3 cut(s) 145, 507, 1069
Bsp19I CCATGG 1 cut(s) 405
BspANI GGCC 6 cut(s) 62, 113, 194, 353, 565, 1295
BspCNI CTCAG 5 cut(s) 141, 306, 961, 963, 1105
BspDI ATCGAT 2 cut(s) 11, 510
BspFNI CGCG 2 cut(s) 249, 401
BspLI GGNNCC 4 cut(s) 214, 253, 382, 804
BspQI GCTCTTC 1 cut(s) 1130
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 2 cut(s) 455, 874
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 2 cut(s) 771, 1147
BsrFI RCCGGY 2 cut(s) 52, 209
BsrI ACTGG 2 cut(s) 157, 1303
BssAI RCCGGY 2 cut(s) 52, 209
BssECI CCNNGG 6 cut(s) 107, 405, 566, 573, 899, 1029
BssMI GATC 3 cut(s) 145, 507, 1069
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 405, 1029
Bst2UI CCWGG 3 cut(s) 632, 700, 900
Bst4CI ACNGT 8 cut(s) 226, 1037, 1153, 1159, 1195, 1282, 1347, 1353
Bst6I CTCTTC 3 cut(s) 65, 1091, 1130
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 290, 499, 732, 747
BstDEI CTNAG 6 cut(s) 149, 276, 293, 950, 969, 1113
BstDSI CCRYGG 2 cut(s) 405, 573
BstF5I GGATG 3 cut(s) 477, 840, 1211
BstFNI CGCG 2 cut(s) 249, 401
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 3 cut(s) 215, 369, 403
BstKTI GATC 3 cut(s) 148, 510, 1072
BstMAI GTCTC 5 cut(s) 100, 232, 455, 874, 1256
BstMBI GATC 3 cut(s) 145, 507, 1069
BstMCI CGRYCG 3 cut(s) 53, 57, 187
BstMWI GCNNNNNNNGC 4 cut(s) 255, 407, 607, 802
BstNI CCWGG 3 cut(s) 632, 700, 900
BstNSI RCATGY 2 cut(s) 734, 992
BstSCI CCNGG 4 cut(s) 268, 630, 698, 898
BstUI CGCG 2 cut(s) 249, 401
BstV1I GCAGC 1 cut(s) 769
BstV2I GAAGAC 2 cut(s) 320, 1309
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 1 cut(s) 145
Bsu15I ATCGAT 2 cut(s) 11, 510
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 6 cut(s) 62, 113, 194, 353, 565, 1295
BsuTUI ATCGAT 2 cut(s) 11, 510
BtgI CCRYGG 2 cut(s) 405, 573
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 3 cut(s) 477, 840, 1211
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 4 cut(s) 911, 1155, 1200, 1343
Cac8I GCNNGC 4 cut(s) 290, 499, 732, 747
CaiI CAGNNNCTG 1 cut(s) 1157
CfoI GCGC 3 cut(s) 215, 369, 403
Cfr10I RCCGGY 2 cut(s) 52, 209
Cfr13I GGNCC 4 cut(s) 111, 193, 352, 570
ClaI ATCGAT 2 cut(s) 11, 510
CseI GACGC 1 cut(s) 438
CspAI ACCGGT 1 cut(s) 52
DdeI CTNAG 6 cut(s) 149, 276, 293, 950, 969, 1113
DinI GGCGCC 1 cut(s) 214
DpnI GATC 3 cut(s) 147, 509, 1071
DpnII GATC 3 cut(s) 145, 507, 1069
DriI GACNNNNNGTC 1 cut(s) 42
EaeI YGGCCR 3 cut(s) 60, 563, 1293
Eam1104I CTCTTC 3 cut(s) 65, 1091, 1130
Eam1105I GACNNNNNGTC 1 cut(s) 42
EarI CTCTTC 3 cut(s) 65, 1091, 1130
EciI GGCGGA 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 405, 1029
Eco31I GGTCTC 2 cut(s) 455, 874
Eco47I GGWCC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 1 cut(s) 969
Eco88I CYCGRG 2 cut(s) 1130, 1327
EcoRII CCWGG 3 cut(s) 630, 698, 898
EcoT14I CCWWGG 2 cut(s) 405, 1029
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
ErhI CCWWGG 2 cut(s) 405, 1029
Esp3I CGTCTC 3 cut(s) 100, 232, 1256
FauI CCCGC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 1123
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 2 cut(s) 77, 183
Fnu4HI GCNGC 5 cut(s) 250, 396, 399, 735, 783
FokI GGATG 3 cut(s) 484, 847, 1198
Fsp4HI GCNGC 5 cut(s) 250, 396, 399, 735, 783
FspBI CTAG 1 cut(s) 468
GlaI GCGC 3 cut(s) 214, 368, 402
GluI GCNGC 5 cut(s) 250, 396, 399, 735, 783
GsaI CCCAGC 1 cut(s) 1058
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 6 cut(s) 62, 113, 194, 353, 565, 1295
HapII CCGG 4 cut(s) 53, 210, 270, 502
HgaI GACGC 1 cut(s) 438
HhaI GCGC 3 cut(s) 215, 369, 403
Hin1I GRCGYC 1 cut(s) 213
Hin6I GCGC 3 cut(s) 213, 367, 401
HinP1I GCGC 3 cut(s) 213, 367, 401
HincII GTYRAC 3 cut(s) 78, 184, 1189
HindII GTYRAC 3 cut(s) 78, 184, 1189
HinfI GANTC 2 cut(s) 151, 1166
HpaI GTTAAC 1 cut(s) 1189
HpaII CCGG 4 cut(s) 53, 210, 270, 502
HphI GGTGA 3 cut(s) 146, 222, 671
Hpy166II GTNNAC 6 cut(s) 78, 184, 414, 490, 1119, 1189
Hpy188I TCNGA 8 cut(s) 150, 167, 432, 524, 802, 893, 942, 1256
Hpy188III TCNNGA 5 cut(s) 67, 952, 968, 1073, 1132
Hpy8I GTNNAC 6 cut(s) 78, 184, 414, 490, 1119, 1189
Hpy99I CGWCG 8 cut(s) 40, 48, 68, 119, 122, 185, 454, 743
HpyAV CCTTC 6 cut(s) 451, 529, 637, 641, 709, 1239
HpyCH4III ACNGT 8 cut(s) 226, 1037, 1153, 1159, 1195, 1282, 1347, 1353
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 6 cut(s) 764, 914, 1049, 1066, 1242, 1300
HpyF10VI GCNNNNNNNGC 4 cut(s) 255, 407, 607, 802
HpyF3I CTNAG 6 cut(s) 149, 276, 293, 950, 969, 1113
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 213
HspAI GCGC 3 cut(s) 213, 367, 401
KasI GGCGCC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 1069
KspAI GTTAAC 1 cut(s) 1189
Kzo9I GATC 3 cut(s) 145, 507, 1069
LguI GCTCTTC 1 cut(s) 1130
LmnI GCTCC 4 cut(s) 257, 386, 802, 1030
Lsp1109I GCAGC 1 cut(s) 769
LweI GCATC 3 cut(s) 462, 825, 853
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 3 cut(s) 152, 1153, 1347
MalI GATC 3 cut(s) 147, 509, 1071
MbiI CCGCTC 1 cut(s) 189
MboI GATC 3 cut(s) 145, 507, 1069
MboII GAAGA 7 cut(s) 82, 320, 517, 652, 1108, 1147, 1309
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 1027
MlsI TGGCCA 1 cut(s) 1295
MluCI AATT 3 cut(s) 581, 826, 960
MluNI TGGCCA 1 cut(s) 1295
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 2 cut(s) 160, 1160
MmeI TCCRAC 4 cut(s) 410, 502, 1143, 1182
Mox20I TGGCCA 1 cut(s) 1295
MscI TGGCCA 1 cut(s) 1295
MseI TTAA 2 cut(s) 945, 1188
MslI CAYNNNNRTG 2 cut(s) 861, 1266
Msp20I TGGCCA 1 cut(s) 1295
MspI CCGG 4 cut(s) 53, 210, 270, 502
MspR9I CCNGG 4 cut(s) 270, 632, 700, 900
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 3 cut(s) 632, 700, 900
MvnI CGCG 2 cut(s) 249, 401
MwoI GCNNNNNNNGC 4 cut(s) 255, 407, 607, 802
NarI GGCGCC 1 cut(s) 213
NciI CCSGG 1 cut(s) 270
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 1123
NdeII GATC 3 cut(s) 145, 507, 1069
NlaIV GGNNCC 4 cut(s) 214, 253, 382, 804
NmeAIII GCCGAG 3 cut(s) 170, 591, 1148
NmuCI GTSAC 2 cut(s) 152, 1153
NspI RCATGY 2 cut(s) 734, 992
PaeI GCATGC 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 1130
PciI ACATGT 1 cut(s) 988
PciSI GCTCTTC 1 cut(s) 1130
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 63, 99
PctI GAATGC 1 cut(s) 796
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 5 cut(s) 251, 397, 400, 736, 784
PleI GAGTC 2 cut(s) 159, 1160
PluTI GGCGCC 1 cut(s) 216
PpsI GAGTC 2 cut(s) 159, 1160
PscI ACATGT 1 cut(s) 988
Psp6I CCWGG 3 cut(s) 630, 698, 898
PspFI CCCAGC 1 cut(s) 1054
PspGI CCWGG 3 cut(s) 630, 698, 898
PspN4I GGNNCC 4 cut(s) 214, 253, 382, 804
PspPI GGNCC 4 cut(s) 111, 193, 352, 570
PstNI CAGNNNCTG 1 cut(s) 1157
PsuI RGATCY 1 cut(s) 145
RseI CAYNNNNRTG 2 cut(s) 861, 1266
SalI GTCGAC 2 cut(s) 76, 182
SapI GCTCTTC 1 cut(s) 1130
SaqAI TTAA 2 cut(s) 945, 1188
SatI GCNGC 5 cut(s) 250, 396, 399, 735, 783
Sau3AI GATC 3 cut(s) 145, 507, 1069
Sau96I GGNCC 4 cut(s) 111, 193, 352, 570
SchI GAGTC 2 cut(s) 160, 1160
ScrFI CCNGG 4 cut(s) 270, 632, 700, 900
SduI GDGCHC 1 cut(s) 1027
SfaNI GCATC 3 cut(s) 462, 825, 853
SfoI GGCGCC 1 cut(s) 214
Sfr274I CTCGAG 1 cut(s) 1130
SinI GGWCC 1 cut(s) 570
SlaI CTCGAG 1 cut(s) 1130
SmiMI CAYNNNNRTG 2 cut(s) 861, 1266
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
SphI GCATGC 1 cut(s) 734
Sse9I AATT 3 cut(s) 581, 826, 960
SspDI GGCGCC 1 cut(s) 212
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 4 cut(s) 268, 630, 698, 898
StyI CCWWGG 2 cut(s) 405, 1029
TaaI ACNGT 8 cut(s) 226, 1037, 1153, 1159, 1195, 1282, 1347, 1353
TaiI ACGT 1 cut(s) 495
TaqII GACCGA 2 cut(s) 314, 898
TasI AATT 3 cut(s) 581, 826, 960
TauI GCSGC 4 cut(s) 252, 398, 401, 737
Tru1I TTAA 2 cut(s) 945, 1188
Tru9I TTAA 2 cut(s) 945, 1188
TscAI CASTG 4 cut(s) 911, 1162, 1200, 1350
TseFI GTSAC 2 cut(s) 152, 1153
TseI GCWGC 1 cut(s) 782
Tsp45I GTSAC 2 cut(s) 152, 1153
TspDTI ATGAA 6 cut(s) 470, 845, 1076, 1250, 1284, 1349
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 4 cut(s) 911, 1162, 1200, 1350
VpaK11BI GGWCC 1 cut(s) 570
XceI RCATGY 2 cut(s) 734, 992
XhoI CTCGAG 1 cut(s) 1130
XmiI GTMKAC 2 cut(s) 77, 183
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.