Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8045364.1

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 441

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8045364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ttgaaagggagtagtgggtttgttcagattaagctcaggacagcaattattcctgaggctatcactttggaacatgtttcaaagagtgttgcttacgacagaacgagtgctcccaaggactgtcgtgtatctgcatggctgagaggagtgcatgatcaggagttagaagttcatacagagaagaggtttcttttggctgagttcacatatgacctcgagaagagcaatgcccagacagtcactgtgttggactcggctgtgtctaacattgttaacacagtgaggttggacttcacatccaatcatggtagcccttcacatacttgcatatatcgtctgcgagttcatggacatgaacccgaaactgtttctgtaatggccatgcaccagtcttatatcgtcttcgacttctcgggcatgaacctgacactgttactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

146

Amino Acids

16.37

Weight (kDa)

6.46

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	4, 81
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	2 cut(s)	215, 412
AoxI	GGCC	1 cut(s)	378
AvaI	CYCGRG	2 cut(s)	215, 412
AxyI	CCTNAGG	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	154
BmeT110I	CYCGRG	2 cut(s)	215, 412
BpiI	GAAGAC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse1I	ACTGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	4 cut(s)	45, 49, 131, 189
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	2 cut(s)	215, 412
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	215, 412
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	4 cut(s)	46, 48, 132, 190
BspQI	GCTCTTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	7 cut(s)	122, 238, 244, 280, 367, 432, 438
Bst6I	CTCTTC	2 cut(s)	176, 215
BstDEI	CTNAG	4 cut(s)	35, 54, 140, 198
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	240, 285, 428
CaiI	CAGNNNCTG	1 cut(s)	242
CviAII	CATG	8 cut(s)	74, 135, 152, 305, 347, 353, 382, 418
CviJI	RGCY	7 cut(s)	34, 59, 139, 197, 257, 312, 380
CviKI_1	RGCY	7 cut(s)	34, 59, 139, 197, 257, 312, 380
DdeI	CTNAG	4 cut(s)	35, 54, 140, 198
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	176, 215
EarI	CTCTTC	2 cut(s)	176, 215
Eco130I	CCWWGG	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	54
Eco88I	CYCGRG	2 cut(s)	215, 412
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	8 cut(s)	77, 138, 155, 308, 350, 356, 385, 421
FatI	CATG	8 cut(s)	73, 134, 151, 304, 346, 352, 381, 417
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	154
FokI	GGATG	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	380
Hin1II	CATG	8 cut(s)	77, 138, 155, 308, 350, 356, 385, 421
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	251
HpaI	GTTAAC	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	204, 274
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	4 cut(s)	37, 53, 158, 217
Hpy8I	GTNNAC	2 cut(s)	204, 274
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	7 cut(s)	122, 238, 244, 280, 367, 432, 438
HpyCH4V	TGCA	4 cut(s)	134, 151, 327, 385
HpyF3I	CTNAG	4 cut(s)	35, 54, 140, 198
Hsp92II	CATG	8 cut(s)	77, 138, 155, 308, 350, 356, 385, 421
Ksp22I	TGATCA	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	22, 66, 143, 245, 401, 437
MaeIII	GTNAC	2 cut(s)	238, 432
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	193, 232, 394
MhlI	GDGCHC	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	228, 267
MnlI	CCTC	5 cut(s)	49, 137, 177, 224, 276
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	2 cut(s)	30, 273
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	380
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	8 cut(s)	77, 138, 155, 308, 350, 356, 385, 421
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	215
PciI	ACATGT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	30, 273
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	5 cut(s)	36, 188, 216, 287, 426
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	7 cut(s)	122, 238, 244, 280, 367, 432, 438
TaqI	TCGA	2 cut(s)	216, 405
TasI	AATT	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	30, 273
Tru9I	TTAA	2 cut(s)	30, 273
TscAI	CASTG	3 cut(s)	247, 285, 435
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	161, 335, 369, 434
TspRI	CASTG	3 cut(s)	247, 285, 435
XceI	RCATGY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.