MD07G1053000.v1.1

SUN domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
4875450 .. 4880887
5438 bp
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UTR
Exon/CDS
Intron
MD07G1053000.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGTCGGCGTCGACCGTTTCAATAACGGCGAACCCGGCGACGACTCGGCGGCGACACGTCGTGGCCGTCGATAAGAAGACATCCAACATCGAGCTTGTCTCCGCCGAACCCCAAACCCACAAAGCCGACGACACCGCCACCAATTCCAAAGATCTCAGCCACCATTCCATCAGAGGCGAACCGGGTCTTGACCGGTCCGCTCAACCCAAGAAAACCGGCCCCAATTCCACCATTTCGCCGCCTTCCAATCGCCGCTCTCGCAAAACCCTAGACGCTGATCCCAAGCCTCGATGGGTCACCGTCCTCCGAATCGTTTCCAAGAACTTAATTCTGCTTGTTCTGATTGTGGGTTTGTTTCAGATAGTCAGGAGACTTGCTCTTGGGCCTGGTGTAGCGGTTCCCATGGCTTTTTCGGATTTGGAAGGCCGAATAGCGGAGGTGGAAGCGTTTATGAAGACCACTACGAAGATGGTTCAGGTTCAAGTGGAGGTTGTGGACCGGAAGATTGAGAGCGAGGTCGGAGGGTTAAGGAGAGAAATGGAGAAGAAGATAGAGGATAAAGGGGTTGCGTTGGAGAGTGATTTGAGGAAATTGGAGGCCAAGAATGAAGGGTTGGAGAGGTCGGTGAGCGATTTGAGAAGCGTGGAGTGGTTGTCGAAGCAAGAGTTTGAAAACGTGTATGAGGATTTGAAGAAGAAGGTGAAGAGCAGTGAAGATAGCGTATTGGGTGCGACTTTGGATGACATAAGGGCCTATGCGAGGAATGTGGTTGAGAAAGAGATAGAAAAGCACGCGGCGGATGGACTTGGCAGGGTGGATTATGCTTTGGCCACTGGTGGGGCTTCCGTTGTGAAGCATTCAGAGCCATATTTGGTGGGGAAAGGGGGAAATTGGTTCTTGAAGAGTTCCAAAAATGGGGTGCATAGCGATGCTGACAAGATGTTGAAACCCAGTTTTGGTGAACCTGGCCATTGTTTTCCCTTGAAGGGGAGTAGTGGATTTGTCCAGATTAAGCTGCGGACTGCCATCATTCCCGAGGCTATCACTCTGGAACATGTTGCAAAGAGCGTTGCTTATGACAGATCGAGTGCTCCTAAGGACTGCAGGATCTCTGGGTGGCTGCGAGGACAGGATGATCCAGAAGTCTATACAGAGATTCGCCTGGTTGAATTTACTTATGACCTTGAGAAAAGCAATGCACAGACATTCAATGTCTTGGACTCGGCAGTGTCTGGCCTTGTCGACACAGTGAGGTTGGACTTCACATCCAACCATGGAAGCCCTTCTCATACTTGCATATATCGATTGAGAGTGCACGGACATGAACCAAACGCCGTTTCTATGATGGCCATGCAGCAGTAG

Protein Analysis

454

Amino Acids

49.95

Weight (kDa)

8.7

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 310 - 441 3.2e-38 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 200, 255
AccI GTMKAC 2 cut(s) 11, 1242
AccII CGCG 1 cut(s) 794
AclWI GGATC 3 cut(s) 272, 1115, 1130
AcoI YGGCCR 4 cut(s) 63, 828, 967, 1347
AcsI RAATTY 1 cut(s) 1169
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 61
AfiI CCNNNNNNNGG 7 cut(s) 433, 759, 837, 915, 956, 986, 987
AflIII ACRYGT 3 cut(s) 55, 675, 1054
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 9 cut(s) 21, 482, 671, 691, 901, 946, 985, 1169, 1210
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 3 cut(s) 385, 964, 1161
AjuI GAANNNNNNNTTGG 4 cut(s) 596, 628, 1321, 1353
AluBI AGCT 2 cut(s) 94, 1015
AluI AGCT 2 cut(s) 94, 1015
Alw21I GWGCWC 2 cut(s) 1093, 1317
Alw26I GTCTC 2 cut(s) 103, 364
Alw44I GTGCAC 1 cut(s) 1313
AlwI GGATC 3 cut(s) 272, 1115, 1130
AlwNI CAGNNNCTG 1 cut(s) 1232
Ama87I CYCGRG 1 cut(s) 1034
ApaLI GTGCAC 1 cut(s) 1313
ApeKI GCWGC 3 cut(s) 1015, 1120, 1354
ApoI RAATTY 1 cut(s) 1169
AsiGI ACCGGT 1 cut(s) 192
Asp700I GAANNNNTTC 2 cut(s) 313, 1282
AspS9I GGNCC 5 cut(s) 195, 218, 383, 496, 750
AsuC2I CCSGG 2 cut(s) 35, 183
AsuHPI GGTGA 4 cut(s) 289, 637, 712, 971
AvaI CYCGRG 1 cut(s) 1034
AvaII GGWCC 2 cut(s) 195, 496
AxyI CCTNAGG 1 cut(s) 1095
BaeGI GKGCMC 1 cut(s) 1317
BalI TGGCCA 3 cut(s) 830, 969, 1349
BbsI GAAGAC 2 cut(s) 83, 461
Bbv12I GWGCWC 2 cut(s) 1093, 1317
BbvI GCAGC 2 cut(s) 1002, 1107
BccI CCATC 6 cut(s) 176, 285, 463, 794, 1034, 1339
BceAI ACGGC 3 cut(s) 42, 50, 1319
BciT130I CCWGG 3 cut(s) 387, 966, 1163
BcnI CCSGG 2 cut(s) 35, 183
BcoDI GTCTC 2 cut(s) 103, 364
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 1102
BglII AGATCT 1 cut(s) 151
BisI GCNGC 7 cut(s) 50, 239, 253, 795, 1016, 1121, 1355
BlsI GCNGC 7 cut(s) 51, 240, 254, 796, 1017, 1122, 1356
Bme1390I CCNGG 5 cut(s) 35, 183, 387, 966, 1163
Bme18I GGWCC 2 cut(s) 195, 496
BmeT110I CYCGRG 1 cut(s) 1034
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 5 cut(s) 195, 218, 383, 496, 750
BmiI GGNNCC 2 cut(s) 220, 399
BmrFI CCNGG 5 cut(s) 35, 183, 387, 966, 1163
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 1 cut(s) 919
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 2 cut(s) 83, 461
BplI GAGNNNNNCTC 4 cut(s) 83, 115, 361, 393
BpuEI CTTGAG 1 cut(s) 1205
BpuMI CCSGG 2 cut(s) 35, 183
Bsa29I ATCGAT 1 cut(s) 1303
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 402, 1035, 1273
BsaWI WCCGGW 2 cut(s) 192, 498
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 7 cut(s) 433, 759, 837, 915, 956, 986, 987
Bse118I RCCGGY 2 cut(s) 192, 215
Bse1I ACTGG 2 cut(s) 838, 951
Bse21I CCTNAGG 1 cut(s) 1095
Bse3DI GCAATG 1 cut(s) 1201
BseBI CCWGG 3 cut(s) 387, 966, 1163
BseCI ATCGAT 1 cut(s) 1303
BseDI CCNNGG 3 cut(s) 402, 1035, 1273
BseGI GGATG 5 cut(s) 80, 745, 805, 1138, 1265
BseLI CCNNNNNNNGG 7 cut(s) 433, 759, 837, 915, 956, 986, 987
BseMI GCAATG 1 cut(s) 1201
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 838, 951
BseSI GKGCMC 1 cut(s) 1317
BseXI GCAGC 2 cut(s) 1002, 1107
Bsh1236I CGCG 1 cut(s) 794
Bsh1285I CGRYCG 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 1303
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 1093, 1317
BsiHKCI CYCGRG 1 cut(s) 1034
BsiSI CCGG 5 cut(s) 35, 182, 193, 216, 499
BslI CCNNNNNNNGG 7 cut(s) 433, 759, 837, 915, 956, 986, 987
BsmAI GTCTC 2 cut(s) 103, 364
BsmI GAATGC 1 cut(s) 856
BsoBI CYCGRG 1 cut(s) 1034
Bsp1286I GDGCHC 2 cut(s) 1093, 1317
Bsp143I GATC 5 cut(s) 151, 277, 1082, 1107, 1135
Bsp19I CCATGG 2 cut(s) 402, 1273
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 1303
BspFNI CGCG 1 cut(s) 794
BspLI GGNNCC 2 cut(s) 220, 399
BspMAI CTGCAG 1 cut(s) 1106
BspPI GGATC 3 cut(s) 272, 1115, 1130
BspQI GCTCTTC 1 cut(s) 698
BsrBI CCGCTC 2 cut(s) 200, 255
BsrDI GCAATG 1 cut(s) 1201
BsrFI RCCGGY 2 cut(s) 192, 215
BsrI ACTGG 2 cut(s) 838, 951
BssAI RCCGGY 2 cut(s) 192, 215
BssECI CCNNGG 3 cut(s) 402, 1035, 1273
BssMI GATC 5 cut(s) 151, 277, 1082, 1107, 1135
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 2 cut(s) 402, 1273
Bst2UI CCWGG 3 cut(s) 387, 966, 1163
Bst4CI ACNGT 3 cut(s) 16, 301, 1249
Bst6I CTCTTC 2 cut(s) 698, 896
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 2 cut(s) 155, 1095
BstDSI CCRYGG 2 cut(s) 402, 1273
BstEII GGTNACC 1 cut(s) 295
BstENI CCTNNNNNAGG 1 cut(s) 757
BstF5I GGATG 5 cut(s) 80, 745, 805, 1138, 1265
BstFNI CGCG 1 cut(s) 794
BstKTI GATC 5 cut(s) 154, 280, 1085, 1110, 1138
BstMAI GTCTC 2 cut(s) 103, 364
BstMBI GATC 5 cut(s) 151, 277, 1082, 1107, 1135
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 35, 258, 862
BstNI CCWGG 3 cut(s) 387, 966, 1163
BstNSI RCATGY 1 cut(s) 1058
BstPI GGTNACC 1 cut(s) 295
BstSCI CCNGG 5 cut(s) 33, 181, 385, 964, 1161
BstSFI CTRYAG 1 cut(s) 1102
BstSLI GKGCMC 1 cut(s) 1317
BstUI CGCG 1 cut(s) 794
BstV1I GCAGC 2 cut(s) 1002, 1107
BstV2I GAAGAC 2 cut(s) 83, 461
BstX2I RGATCY 2 cut(s) 151, 1107
BstYI RGATCY 2 cut(s) 151, 1107
Bsu15I ATCGAT 1 cut(s) 1303
Bsu36I CCTNAGG 1 cut(s) 1095
BsuTUI ATCGAT 1 cut(s) 1303
BtgI CCRYGG 2 cut(s) 402, 1273
BtgZI GCGATG 1 cut(s) 942
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 5 cut(s) 80, 745, 805, 1138, 1265
BtsI GCAGTG 2 cut(s) 715, 1233
BtsIMutI CAGTG 4 cut(s) 715, 831, 1233, 1254
Cac8I GCNNGC 1 cut(s) 792
CaiI CAGNNNCTG 1 cut(s) 1232
Cfr10I RCCGGY 2 cut(s) 192, 215
Cfr13I GGNCC 5 cut(s) 195, 218, 383, 496, 750
ClaI ATCGAT 1 cut(s) 1303
CpoI CGGWCCG 1 cut(s) 195
CseI GACGC 1 cut(s) 281
CspAI ACCGGT 1 cut(s) 192
CspI CGGWCCG 1 cut(s) 195
CviAII CATG 5 cut(s) 403, 1055, 1274, 1322, 1351
DdeI CTNAG 2 cut(s) 155, 1095
DpnI GATC 5 cut(s) 153, 279, 1084, 1109, 1137
DpnII GATC 5 cut(s) 151, 277, 1082, 1107, 1135
DraIII CACNNNGTG 1 cut(s) 61
EaeI YGGCCR 4 cut(s) 63, 828, 967, 1347
Eam1104I CTCTTC 2 cut(s) 698, 896
EarI CTCTTC 2 cut(s) 698, 896
EciI GGCGGA 2 cut(s) 91, 812
Eco130I CCWWGG 2 cut(s) 402, 1273
Eco47I GGWCC 2 cut(s) 195, 496
Eco81I CCTNAGG 1 cut(s) 1095
Eco88I CYCGRG 1 cut(s) 1034
Eco91I GGTNACC 1 cut(s) 295
EcoNI CCTNNNNNAGG 1 cut(s) 757
EcoO109I RGGNCCY 1 cut(s) 750
EcoO65I GGTNACC 1 cut(s) 295
EcoRII CCWGG 3 cut(s) 385, 964, 1161
EcoT14I CCWWGG 2 cut(s) 402, 1273
ErhI CCWWGG 2 cut(s) 402, 1273
FaeI CATG 5 cut(s) 406, 1058, 1277, 1325, 1354
FatI CATG 5 cut(s) 402, 1054, 1273, 1321, 1350
FblI GTMKAC 2 cut(s) 11, 1242
Fnu4HI GCNGC 7 cut(s) 50, 239, 253, 795, 1016, 1121, 1355
FokI GGATG 5 cut(s) 67, 752, 812, 1145, 1252
Fsp4HI GCNGC 7 cut(s) 50, 239, 253, 795, 1016, 1121, 1355
FspBI CTAG 1 cut(s) 269
GluI GCNGC 7 cut(s) 50, 239, 253, 795, 1016, 1121, 1355
HapII CCGG 5 cut(s) 35, 182, 193, 216, 499
HgaI GACGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 5 cut(s) 406, 1058, 1277, 1325, 1354
HincII GTYRAC 2 cut(s) 12, 1243
HindII GTYRAC 2 cut(s) 12, 1243
HinfI GANTC 4 cut(s) 43, 309, 1156, 1220
HpaII CCGG 5 cut(s) 35, 182, 193, 216, 499
HphI GGTGA 4 cut(s) 289, 637, 712, 971
Hpy166II GTNNAC 5 cut(s) 12, 496, 962, 1243, 1315
Hpy188I TCNGA 7 cut(s) 173, 308, 342, 360, 415, 521, 862
Hpy188III TCNNGA 7 cut(s) 188, 367, 898, 1006, 1034, 1049, 1139
Hpy8I GTNNAC 5 cut(s) 12, 496, 962, 1243, 1315
Hpy99I CGWCG 5 cut(s) 13, 43, 62, 71, 131
HpyAV CCTTC 6 cut(s) 252, 416, 602, 691, 979, 1293
HpyCH4III ACNGT 3 cut(s) 16, 301, 1249
HpyCH4IV ACGT 2 cut(s) 57, 675
HpyCH4V TGCA 7 cut(s) 922, 1061, 1104, 1199, 1296, 1315, 1354
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 258, 862
HpyF3I CTNAG 2 cut(s) 155, 1095
HpySE526I ACGT 2 cut(s) 57, 675
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 5 cut(s) 406, 1058, 1277, 1325, 1354
Kzo9I GATC 5 cut(s) 151, 277, 1082, 1107, 1135
LguI GCTCTTC 1 cut(s) 698
LmnI GCTCC 1 cut(s) 1096
Lsp1109I GCAGC 2 cut(s) 1002, 1107
LweI GCATC 1 cut(s) 919
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 57, 675
MaeIII GTNAC 1 cut(s) 295
MalI GATC 5 cut(s) 153, 279, 1084, 1109, 1137
MbiI CCGCTC 2 cut(s) 200, 255
MboI GATC 5 cut(s) 151, 277, 1082, 1107, 1135
MflI RGATCY 2 cut(s) 151, 1107
MhlI GDGCHC 2 cut(s) 1093, 1317
MlsI TGGCCA 3 cut(s) 830, 969, 1349
MluCI AATT 6 cut(s) 142, 223, 327, 590, 889, 1169
MluNI TGGCCA 3 cut(s) 830, 969, 1349
MlyI GAGTC 2 cut(s) 37, 1214
MmeI TCCRAC 6 cut(s) 108, 499, 552, 594, 1236, 1293
Mox20I TGGCCA 3 cut(s) 830, 969, 1349
MroXI GAANNNNTTC 2 cut(s) 313, 1282
MscI TGGCCA 3 cut(s) 830, 969, 1349
MseI TTAA 3 cut(s) 326, 527, 1011
MslI CAYNNNNRTG 2 cut(s) 927, 1320
Msp20I TGGCCA 3 cut(s) 830, 969, 1349
MspI CCGG 5 cut(s) 35, 182, 193, 216, 499
MspR9I CCNGG 5 cut(s) 35, 183, 387, 966, 1163
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 3 cut(s) 387, 966, 1163
MvnI CGCG 1 cut(s) 794
MwoI GCNNNNNNNGC 3 cut(s) 35, 258, 862
NciI CCSGG 2 cut(s) 35, 183
NcoI CCATGG 2 cut(s) 402, 1273
NdeII GATC 5 cut(s) 151, 277, 1082, 1107, 1135
NlaIII CATG 5 cut(s) 406, 1058, 1277, 1325, 1354
NlaIV GGNNCC 2 cut(s) 220, 399
NmeAIII GCCGAG 2 cut(s) 25, 1202
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 1058
PciI ACATGT 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 66
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 2 cut(s) 313, 1282
PfeI GAWTC 2 cut(s) 309, 1156
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 7 cut(s) 51, 240, 254, 796, 1017, 1122, 1356
PleI GAGTC 2 cut(s) 37, 1214
PpsI GAGTC 2 cut(s) 37, 1214
PscI ACATGT 1 cut(s) 1054
Psp6I CCWGG 3 cut(s) 385, 964, 1161
PspEI GGTNACC 1 cut(s) 295
PspGI CCWGG 3 cut(s) 385, 964, 1161
PspN4I GGNNCC 2 cut(s) 220, 399
PspPI GGNCC 5 cut(s) 195, 218, 383, 496, 750
PstI CTGCAG 1 cut(s) 1106
PstNI CAGNNNCTG 1 cut(s) 1232
PsuI RGATCY 2 cut(s) 151, 1107
RseI CAYNNNNRTG 2 cut(s) 927, 1320
Rsr2I CGGWCCG 1 cut(s) 195
RsrII CGGWCCG 1 cut(s) 195
SalI GTCGAC 2 cut(s) 10, 1241
SapI GCTCTTC 1 cut(s) 698
SaqAI TTAA 3 cut(s) 326, 527, 1011
SatI GCNGC 7 cut(s) 50, 239, 253, 795, 1016, 1121, 1355
Sau3AI GATC 5 cut(s) 151, 277, 1082, 1107, 1135
Sau96I GGNCC 5 cut(s) 195, 218, 383, 496, 750
SchI GAGTC 2 cut(s) 37, 1214
ScrFI CCNGG 5 cut(s) 35, 183, 387, 966, 1163
SduI GDGCHC 2 cut(s) 1093, 1317
SfaNI GCATC 1 cut(s) 919
SfcI CTRYAG 1 cut(s) 1102
SinI GGWCC 2 cut(s) 195, 496
SmiMI CAYNNNNRTG 2 cut(s) 927, 1320
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
Sse9I AATT 6 cut(s) 142, 223, 327, 590, 889, 1169
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 5 cut(s) 33, 181, 385, 964, 1161
StyI CCWWGG 2 cut(s) 402, 1273
TaaI ACNGT 3 cut(s) 16, 301, 1249
TaiI ACGT 2 cut(s) 60, 678
TaqI TCGA 8 cut(s) 11, 69, 90, 289, 656, 1085, 1242, 1303
TasI AATT 6 cut(s) 142, 223, 327, 590, 889, 1169
TauI GCSGC 4 cut(s) 52, 241, 255, 797
TfiI GAWTC 2 cut(s) 309, 1156
Tru1I TTAA 3 cut(s) 326, 527, 1011
Tru9I TTAA 3 cut(s) 326, 527, 1011
TscAI CASTG 4 cut(s) 715, 838, 1233, 1254
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 3 cut(s) 1015, 1120, 1354
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 467, 621, 1338
TspGWI ACGGA 2 cut(s) 835, 1332
TspRI CASTG 4 cut(s) 715, 838, 1233, 1254
VneI GTGCAC 1 cut(s) 1313
VpaK11BI GGWCC 2 cut(s) 195, 496
XagI CCTNNNNNAGG 1 cut(s) 757
XapI RAATTY 1 cut(s) 1169
XceI RCATGY 1 cut(s) 1058
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmiI GTMKAC 2 cut(s) 11, 1242
XmnI GAANNNNTTC 2 cut(s) 313, 1282
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.