Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Reverse (-)

223708 .. 225590

Gene Structure 1883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00432660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTATGCCAGGAATGTGGTTGAGAAGGAGATAGAGAAGCATGCCGCGGACGGGCTTGCGAGGGTGGATTATGCAATGGGGAGTGGCGGTGCTGCGGTTTTGAAGCATTCGGAGCCTTATGTGGTGGGGAAAGGGAATTGGTGGATGCGTATGAGGAATGGGGTTCATAGTGATGCTGATAAGATGTTGAGACCGAGTTTCGGAGAGCCTGGGCAGTGTTTTGCATTGAAAGGGAGTAGTGGGTTTGTTCAGATTAAGCTCAGGACAGCAATTATTCCTGAGGCTATCACTCTGGAACATGTTTCAAAGAGTGTTGCTTACGACAGAACGAGTGCTCCCAAGGACTGTCGTGTATCTGCATGGCTGGGAGGAGTGCATGATCAGGAGTCAGAAGTTCATTCAGAGAAGAGGTTTCTTTTGGCTGAGTTCACATATGACCTCGAGAAGAGCAATGCCCAGACAGTCACTGTGTTGGACTCCGCTGTGTCTAACATTGTTAACACAGTGAGGTTGGACTTCACATCCAATCATGGTAGCCCTTCACATACTTGCATATATCGTCTGCGAGTTCATGGACATGAACCCGAAACTGTTTCTGCAATGGCCATGCACCAGTCTTATATCGTCTTCGAGTTCTCGGGCATGAACCTGACACTGTTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

222

Amino Acids

24.55

Weight (kDa)

6.59

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	59 - 194	1.3e-36	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AciI	CCGC	5 cut(s)	48, 50, 90, 98, 483
AcoI	YGGCCR	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	54, 203
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	3 cut(s)	106, 232, 309
AjnI	CCWGG	2 cut(s)	11, 211
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	187
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	2 cut(s)	443, 640
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	1 cut(s)	95
AvaI	CYCGRG	2 cut(s)	443, 640
AxyI	CCTNAGG	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	622
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	13, 213
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	48, 96
BlsI	GCNGC	2 cut(s)	49, 97
Bme1390I	CCNGG	2 cut(s)	13, 213
BmeT110I	CYCGRG	2 cut(s)	443, 640
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	13, 213
BmsI	GCATC	2 cut(s)	138, 166
BpiI	GAAGAC	1 cut(s)	622
Bpu10I	CCTNAGC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	3 cut(s)	48, 212, 342
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 322, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 203
Bse1I	ACTGG	1 cut(s)	616
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	3 cut(s)	84, 460, 609
BseBI	CCWGG	2 cut(s)	13, 213
BseDI	CCNNGG	3 cut(s)	48, 212, 342
BseGI	GGATG	2 cut(s)	153, 524
BseLI	CCNNNNNNNGG	2 cut(s)	54, 203
BseMI	GCAATG	3 cut(s)	84, 460, 609
BseMII	CTCAG	3 cut(s)	273, 277, 417
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	2 cut(s)	443, 640
BslI	CCNNNNNNNGG	2 cut(s)	54, 203
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	608
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	443, 640
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	5 cut(s)	48, 50, 90, 98, 483
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	3 cut(s)	274, 276, 418
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	3 cut(s)	84, 460, 609
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	3 cut(s)	48, 212, 342
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	13, 213
Bst4CI	ACNGT	7 cut(s)	350, 466, 472, 508, 595, 660, 666
Bst6I	CTCTTC	2 cut(s)	404, 443
BstC8I	GCNNGC	2 cut(s)	45, 60
BstDEI	CTNAG	3 cut(s)	263, 282, 426
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	153, 524
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	13, 213
BstNSI	RCATGY	2 cut(s)	47, 305
BstSCI	CCNGG	2 cut(s)	11, 211
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	608
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	153, 524
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	4 cut(s)	224, 468, 513, 656
Cac8I	GCNNGC	2 cut(s)	45, 60
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr42I	CCGCGG	1 cut(s)	51
CviAII	CATG	9 cut(s)	44, 302, 363, 380, 533, 575, 581, 610, 646
CviJI	RGCY	9 cut(s)	58, 118, 211, 262, 287, 367, 425, 540, 608
CviKI_1	RGCY	9 cut(s)	58, 118, 211, 262, 287, 367, 425, 540, 608
DdeI	CTNAG	3 cut(s)	263, 282, 426
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	2 cut(s)	404, 443
EarI	CTCTTC	2 cut(s)	404, 443
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	443, 640
EcoRII	CCWGG	2 cut(s)	11, 211
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	9 cut(s)	47, 305, 366, 383, 536, 578, 584, 613, 649
FatI	CATG	9 cut(s)	43, 301, 362, 379, 532, 574, 580, 609, 645
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	48, 96
FokI	GGATG	2 cut(s)	160, 511
Fsp4HI	GCNGC	2 cut(s)	48, 96
GluI	GCNGC	2 cut(s)	48, 96
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	608
Hin1II	CATG	9 cut(s)	47, 305, 366, 383, 536, 578, 584, 613, 649
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	389, 479
HpaI	GTTAAC	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	432, 502
Hpy188I	TCNGA	5 cut(s)	115, 206, 255, 394, 406
Hpy188III	TCNNGA	5 cut(s)	265, 281, 296, 386, 445
Hpy8I	GTNNAC	2 cut(s)	432, 502
HpyAV	CCTTC	2 cut(s)	22, 552
HpyCH4III	ACNGT	7 cut(s)	350, 466, 472, 508, 595, 660, 666
HpyCH4V	TGCA	7 cut(s)	77, 227, 362, 379, 555, 602, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	3 cut(s)	263, 282, 426
Hsp92II	CATG	9 cut(s)	47, 305, 366, 383, 536, 578, 584, 613, 649
Ksp22I	TGATCA	1 cut(s)	382
KspAI	GTTAAC	1 cut(s)	502
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	382
LguI	GCTCTTC	1 cut(s)	443
LmnI	GCTCC	2 cut(s)	115, 343
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	138, 166
MaeIII	GTNAC	2 cut(s)	466, 660
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	421, 460, 622
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	2 cut(s)	139, 273
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	2 cut(s)	398, 473
MmeI	TCCRAC	2 cut(s)	456, 495
MnlI	CCTC	7 cut(s)	57, 150, 277, 365, 405, 452, 504
Mox20I	TGGCCA	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	2 cut(s)	258, 501
MslI	CAYNNNNRTG	2 cut(s)	174, 579
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	50, 485
MspR9I	CCNGG	2 cut(s)	13, 213
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	2 cut(s)	13, 213
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	9 cut(s)	47, 305, 366, 383, 536, 578, 584, 613, 649
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	2 cut(s)	47, 305
PaeI	GCATGC	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	443
PciI	ACATGT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	443
PctI	GAATGC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	49, 97
PleI	GAGTC	2 cut(s)	397, 473
PpsI	GAGTC	2 cut(s)	397, 473
PscI	ACATGT	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	11, 211
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	11, 211
PspN4I	GGNNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	470
RseI	CAYNNNNRTG	2 cut(s)	174, 579
SacII	CCGCGG	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	258, 501
SatI	GCNGC	2 cut(s)	48, 96
Sau3AI	GATC	1 cut(s)	382
SchI	GAGTC	2 cut(s)	398, 473
ScrFI	CCNGG	2 cut(s)	13, 213
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	5 cut(s)	264, 416, 444, 515, 654
SfaNI	GCATC	2 cut(s)	138, 166
Sfr274I	CTCGAG	1 cut(s)	443
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	174, 579
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	139, 273
SsiI	CCGC	5 cut(s)	48, 50, 90, 98, 483
StyD4I	CCNGG	2 cut(s)	11, 211
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	7 cut(s)	350, 466, 472, 508, 595, 660, 666
TaqI	TCGA	2 cut(s)	444, 633
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	139, 273
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	258, 501
Tru9I	TTAA	2 cut(s)	258, 501
TscAI	CASTG	4 cut(s)	224, 475, 513, 663
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	5 cut(s)	158, 389, 563, 597, 662
TspRI	CASTG	4 cut(s)	224, 475, 513, 663
XceI	RCATGY	2 cut(s)	47, 305
XhoI	CTCGAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.