Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8316659.1

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 935

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8316659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 934 bp

taaaaaaatccaattctcctctctcatttcggttctccgcagtttccctcgtttttcaaatttctcccgtaaaatgtcggcatcgattgtatctatcacggcgaacccaacgacccgtcgtggccatcgagaagaggtcgaccaacatcgaactcgtctccgccgaaccgactgccgacgacgacccccgacccgaaaccgccgtcaaccgctcggcccagacccgtagaaccggcgccacttccaccgtctctcccccctccgctactcgcagctcccggaaagccctccccggaactaagcgacctcgctggctcaggttcgtttgtattttcggcaagtggttcggtcttcttgttttcgctggtggtttggcccagatactcatgcgcctcgcttacggttccacctccaccgccgccacgcccatggcgtttaccgacttggagggtcggattgcggaggtcgaagcgtcgatgaaggagacctctaggatgcttcaggttggggtggacgtggcgagccggaagatcgataaggaggtcggagaattgaggaaggaagtggaggacaggggggttgctttggccggtgaattgaggaaactggaggctaaaagtgaagggctggagaggtccgtggaggaattgaaaagcgtggagtggctgtcaaagcaagagtttgagaggatttaccaggacttgaagaaggaaggggagagtggtgagttgggtgcgagtttcgatgatataatggcgtatgccaggaatgtggttgagaaggagatagagaagcatgccgcggacgggcttgcgagggtggattatgcaatggggagtggcggtgctgcggttgtgaagcattcggagccttatgtggtggggaaagggaattggtggatgcgtatgaggaatggggttcatagtgatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

310

Amino Acids

34.36

Weight (kDa)

9.49

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	1 cut(s)	802
AcoI	YGGCCR	2 cut(s)	122, 587
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgsI	TTSAA	3 cut(s)	58, 651, 705
AjiI	CACGTC	1 cut(s)	516
AjnI	CCWGG	2 cut(s)	695, 763
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	162, 255, 478
AoxI	GGCC	4 cut(s)	122, 215, 374, 587
ApeKI	GCWGC	2 cut(s)	272, 847
ApoI	RAATTY	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	2 cut(s)	238, 392
AspS9I	GGNCC	3 cut(s)	216, 375, 635
AsuC2I	CCSGG	2 cut(s)	279, 293
AsuHPI	GGTGA	2 cut(s)	604, 736
AvaII	GGWCC	1 cut(s)	635
BalI	TGGCCA	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	284, 834
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	2 cut(s)	115, 187
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 327, 361
BciT130I	CCWGG	2 cut(s)	697, 765
BcnI	CCSGG	2 cut(s)	279, 293
BcoDI	GTCTC	3 cut(s)	162, 255, 478
BfaI	CTAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	4 cut(s)	273, 419, 800, 848
BlsI	GCNGC	4 cut(s)	274, 420, 801, 849
Bme1390I	CCNGG	4 cut(s)	279, 293, 697, 765
Bme18I	GGWCC	1 cut(s)	635
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	3 cut(s)	216, 375, 635
BmiI	GGNNCC	3 cut(s)	237, 405, 869
BmrFI	CCNGG	4 cut(s)	279, 293, 697, 765
BmsI	GCATC	4 cut(s)	90, 485, 890, 918
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	2 cut(s)	628, 649
Bpu10I	CCTNAGC	1 cut(s)	316
BpuMI	CCSGG	2 cut(s)	279, 293
Bsa29I	ATCGAT	2 cut(s)	84, 533
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	4 cut(s)	291, 428, 638, 800
BsaXI	ACNNNNNCTCC	6 cut(s)	237, 267, 652, 682, 828, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	2 cut(s)	232, 589
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	836
BseBI	CCWGG	2 cut(s)	697, 765
BseCI	ATCGAT	2 cut(s)	84, 533
BseDI	CCNNGG	4 cut(s)	291, 428, 638, 800
BseGI	GGATG	2 cut(s)	500, 905
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	284, 834
Bsh1236I	CGCG	1 cut(s)	802
BshFI	GGCC	4 cut(s)	124, 217, 376, 589
BshNI	GGYRCC	1 cut(s)	235
BshVI	ATCGAT	2 cut(s)	84, 533
BsiSI	CCGG	5 cut(s)	233, 279, 293, 525, 590
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	3 cut(s)	162, 255, 478
BsmBI	CGTCTC	2 cut(s)	162, 255
BsmI	GAATGC	1 cut(s)	861
BsnI	GGCC	4 cut(s)	124, 217, 376, 589
Bso31I	GGTCTC	1 cut(s)	478
Bsp143I	GATC	1 cut(s)	530
Bsp19I	CCATGG	1 cut(s)	428
BspANI	GGCC	4 cut(s)	124, 217, 376, 589
BspCNI	CTCAG	1 cut(s)	329
BspDI	ATCGAT	2 cut(s)	84, 533
BspFNI	CGCG	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	237, 405, 869
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	478
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	836
BsrFI	RCCGGY	2 cut(s)	232, 589
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	2 cut(s)	232, 589
BssECI	CCNNGG	4 cut(s)	291, 428, 638, 800
BssMI	GATC	1 cut(s)	530
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	697, 765
Bst4CI	ACNGT	2 cut(s)	249, 403
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	4 cut(s)	313, 522, 797, 812
BstDEI	CTNAG	2 cut(s)	299, 316
BstDSI	CCRYGG	3 cut(s)	428, 638, 800
BstF5I	GGATG	2 cut(s)	500, 905
BstFNI	CGCG	1 cut(s)	802
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 392
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	3 cut(s)	162, 255, 478
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	672, 867
BstNI	CCWGG	2 cut(s)	697, 765
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	4 cut(s)	277, 291, 695, 763
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	2 cut(s)	284, 834
BstV2I	GAAGAC	1 cut(s)	343
BstXI	CCANNNNNNTGG	2 cut(s)	429, 771
Bsu15I	ATCGAT	2 cut(s)	84, 533
BsuRI	GGCC	4 cut(s)	124, 217, 376, 589
BsuTUI	ATCGAT	2 cut(s)	84, 533
BtgI	CCRYGG	3 cut(s)	428, 638, 800
BtrI	CACGTC	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	500, 905
Cac8I	GCNNGC	4 cut(s)	313, 522, 797, 812
CfoI	GCGC	2 cut(s)	238, 392
Cfr10I	RCCGGY	2 cut(s)	232, 589
Cfr13I	GGNCC	3 cut(s)	216, 375, 635
Cfr42I	CCGCGG	1 cut(s)	803
ClaI	ATCGAT	2 cut(s)	84, 533
CseI	GACGC	1 cut(s)	461
CviAII	CATG	3 cut(s)	387, 429, 796
DdeI	CTNAG	2 cut(s)	299, 316
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
EaeI	YGGCCR	2 cut(s)	122, 587
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	695, 763
EcoT14I	CCWWGG	1 cut(s)	428
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	2 cut(s)	162, 255
FaeI	CATG	3 cut(s)	390, 432, 799
FaiI	YATR	9 cut(s)	388, 430, 751, 761, 797, 827, 875, 907, 923
FatI	CATG	3 cut(s)	386, 428, 795
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	273, 419, 800, 848
FokI	GGATG	2 cut(s)	507, 912
Fsp4HI	GCNGC	4 cut(s)	273, 419, 800, 848
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	2 cut(s)	237, 391
GluI	GCNGC	4 cut(s)	273, 419, 800, 848
GsuI	CTGGAG	2 cut(s)	628, 649
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	124, 217, 376, 589
HapII	CCGG	5 cut(s)	233, 279, 293, 525, 590
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	2 cut(s)	238, 392
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	390, 432, 799
Hin6I	GCGC	2 cut(s)	236, 390
HinP1I	GCGC	2 cut(s)	236, 390
HincII	GTYRAC	2 cut(s)	140, 207
HindII	GTYRAC	2 cut(s)	140, 207
HpaII	CCGG	5 cut(s)	233, 279, 293, 525, 590
HphI	GGTGA	2 cut(s)	604, 736
Hpy166II	GTNNAC	4 cut(s)	140, 207, 437, 513
Hpy188I	TCNGA	3 cut(s)	455, 547, 867
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	4 cut(s)	140, 207, 437, 513
Hpy99I	CGWCG	4 cut(s)	121, 181, 184, 477
HpyAV	CCTTC	6 cut(s)	474, 552, 616, 702, 706, 774
HpyCH4III	ACNGT	2 cut(s)	249, 403
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	1 cut(s)	829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	672, 867
HpyF3I	CTNAG	2 cut(s)	299, 316
HpySE526I	ACGT	1 cut(s)	515
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	390, 432, 799
HspAI	GCGC	2 cut(s)	236, 390
KasI	GGCGCC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	803
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	2 cut(s)	280, 867
Lsp1109I	GCAGC	2 cut(s)	284, 834
LweI	GCATC	4 cut(s)	90, 485, 890, 918
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	515
MalI	GATC	1 cut(s)	532
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	530
MboII	GAAGA	4 cut(s)	144, 343, 540, 717
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	6 cut(s)	12, 59, 550, 595, 646, 891
MluNI	TGGCCA	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	433, 525
Mox20I	TGGCCA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	124
MslI	CAYNNNNRTG	2 cut(s)	427, 926
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	5 cut(s)	233, 279, 293, 525, 590
MspR9I	CCNGG	4 cut(s)	279, 293, 697, 765
Mva1269I	GAATGC	1 cut(s)	861
MvaI	CCWGG	2 cut(s)	697, 765
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	2 cut(s)	672, 867
NarI	GGCGCC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	279, 293
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	3 cut(s)	390, 432, 799
NlaIV	GGNNCC	3 cut(s)	237, 405, 869
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	1 cut(s)	799
PaeI	GCATGC	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	3 cut(s)	125, 161, 430
PctI	GAATGC	1 cut(s)	861
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	274, 420, 801, 849
PluTI	GGCGCC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	695, 763
PspGI	CCWGG	2 cut(s)	695, 763
PspN4I	GGNNCC	3 cut(s)	237, 405, 869
PspPI	GGNCC	3 cut(s)	216, 375, 635
RseI	CAYNNNNRTG	2 cut(s)	427, 926
SacII	CCGCGG	1 cut(s)	803
SalI	GTCGAC	1 cut(s)	138
SatI	GCNGC	4 cut(s)	273, 419, 800, 848
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	3 cut(s)	216, 375, 635
ScrFI	CCNGG	4 cut(s)	279, 293, 697, 765
SfaNI	GCATC	4 cut(s)	90, 485, 890, 918
SfoI	GGCGCC	1 cut(s)	237
Sfr303I	CCGCGG	1 cut(s)	803
SgrBI	CCGCGG	1 cut(s)	803
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	427, 926
SphI	GCATGC	1 cut(s)	799
Sse9I	AATT	6 cut(s)	12, 59, 550, 595, 646, 891
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	4 cut(s)	277, 291, 695, 763
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	249, 403
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	8 cut(s)	84, 128, 139, 149, 467, 475, 533, 743
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	6 cut(s)	12, 59, 550, 595, 646, 891
TauI	GCSGC	2 cut(s)	421, 802
TseI	GCWGC	2 cut(s)	272, 847
TspDTI	ATGAA	2 cut(s)	493, 910
TspGWI	ACGGA	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.